Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0007479

Physical Location & Seq

Genomic Coordinates Reverse (-)

10391213 .. 10396522

Gene Structure 5310 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG118000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1338 bp

ATGGGAGGCGGAGCCGACGACGCGTCGACCCAATCGGACGGCGGAGACGGAGTCAATATCAACGTCAGAACCCCCAGCGGCTCCAAGTTCGCCGCTCGCATCAGCCTAGACGCCACCGTCCGGGCGCTCAAGGAAGCTCTCTCGCCCAAGTGCGACATTCCGGCTGATCAGCAGCGCCTGATTTACAAGGGCCGGATCTTAAAGGACGATCAGACTCTCCGGAGCTACGGTTTGGAGGCAGATCATGCTGTTCACTTGGTTCGTGGCTTTGCACCATCTGCTGCAGCCAACACTGCTGGTGCAACCAATGCTGGAAGTGAAAATTCTACCCAAGCAAGGGGTTTTGGATCTAATGGAGGTGGAGCATTGGGAGGATCTGGCAATGTCAATGGGATGGGCAGCACTGGTGGTTTATTTGGATCAGCGTTTCCTGACTTGGAACAAGTGCAGCAACAATTTAGAGACATAATGAACATCCCTCTCTTTGACAATCTTGCGAATAGCACTGACATGATACAGAACATGGTTATGAACAACCCTCAAATGCGTGAAATTATTGATCGGAATCCTGAGGTAGGACACGTTCTCAATGATCCTGGCACTATTCGTCAGACACTTGAAGCAGCAAGAAACCCTGAGCTTATGCGTGAGATGATGCGCAACAGTGACAGGGCTATGAGTAACATTGAAGCTTCACCTGAGGGATTTAACATGCTTAGACGTATGTATGAAAATGTACAAGAGCCATTACTGAATGCATCAACCATGGCTGGTGATGCTGGGGGTGATAGTTCAAATCCATTTGCAGCTCTGTTCGTCCCCCAAGGTGAAAACCCAACCAGAACTCAGTCAACTAACTCATCAACTGCTAGTTCTGATTCAGCAACTAGGCCCCCTGCTCCAAATACTGTCCCACTTCCCAACCCATGGTCACCTACAGGCCCTGGAGTTGCCCAAACTAACACCACGAGGTCGAACCCTCTAGGGGATGGTAGGCCGCAGACACCAGCTGGCCGTACTGGACTTAGTTTTCCAGAGTTTGAAGCCACGATGGGTGCGATGCAGGATGCCGCTTTGCTGAATCAGGCTGTACAAAACCCAGCTGTTTCTCAGCTCATGCAAAACATCATCTCCAATCCTCAGAATATGAGCGAGAATCTTGGGTCCGACCCCCAGTTACGCAGCATGCTTGATTCAAATTCTTTCTTTAGAGAAATGATGCAAAACCCTGAATTTTTTCGTCAGTTGGCTTCTCCTGAGACTATGCAGGTATATTCAATTCCCATTTGCTGCATATGCATATATACTGTTAATTTCTCGCTTAGTTTTGGATTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

UBA ubiquitin

Protein Analysis

445

Amino Acids

47.49

Weight (kDa)

4.78

Isoelectric Point (pI)

42.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rad60-SLD	PF11976	19 - 87	2.5e-10	Ubiquitin-2 like Rad60 SUMO-like
ubiquitin	PF00240	20 - 88	1.4e-20	Ubiquitin family
UBQLN1	PF23195	148 - 268	1.4e-42	Ubiquilin-1-like domain
UBQLN1	PF23195	354 - 416	8.3e-07	Ubiquilin-1-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007479)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g10501 FvH4_1g10501 FvH4_1g10501 FvH4_1g10501
malus_domestica	MD02G1118900.v1.1 MD15G1232900.v1.1
prunus_persica	Prupe.7G181000_v2.0.a1 Prupe.7G181000_v2.0.a1 Prupe.7G181000_v2.0.a1
pyrus_communis	pycom15g20740
rosa_chinensis	RchiOBHm_Chr2g0097401 RchiOBHm_Chr2g0097491
rosa_laevigata	RLG00000016723
rosa_roxburghii	Rroxscaffold_2G00144720
rosa_rugosa	Rorug02G0066300 Rorug02G0066400 Rorug02G0066500 Rorug02G0066600 Rorug02G0066700 Rorug02G0066700
rosa_samantha	Rh2AG113000 Rh2BG116000 Rh2CG118000 Rh2DG117100
rosa_wichuraiana	Rw2G008850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1336
AasI	GACNNNNNNGTC	1 cut(s)	116
Acc16I	TGCGCA	1 cut(s)	659
Acc36I	ACCTGC	1 cut(s)	1258
AccB7I	CCANNNNNTGG	1 cut(s)	927
AccBSI	CCGCTC	1 cut(s)	95
AccI	GTMKAC	1 cut(s)	26
AccII	CGCG	1 cut(s)	23
AccIII	TCCGGA	1 cut(s)	219
AciI	CCGC	6 cut(s)	9, 42, 78, 93, 998, 1071
AclWI	GGATC	5 cut(s)	203, 355, 382, 427, 587
AcoI	YGGCCR	1 cut(s)	1012
AcsI	RAATTY	3 cut(s)	322, 1198, 1232
AcyI	GRCGYC	1 cut(s)	111
AfaI	GTAC	3 cut(s)	738, 1018, 1092
AfiI	CCNNNNNNNGG	6 cut(s)	120, 336, 337, 575, 927, 985
AflIII	ACRYGT	2 cut(s)	21, 580
AgsI	TTSAA	6 cut(s)	620, 689, 795, 1043, 1197, 1278
AhdI	GACNNNNNGTC	1 cut(s)	22
AjnI	CCWGG	2 cut(s)	595, 943
AluBI	AGCT	8 cut(s)	137, 225, 640, 692, 809, 1010, 1103, 1114
AluI	AGCT	8 cut(s)	137, 225, 640, 692, 809, 1010, 1103, 1114
Alw26I	GTCTC	3 cut(s)	39, 456, 1253
AlwI	GGATC	5 cut(s)	203, 355, 382, 427, 587
AlwNI	CAGNNNCTG	2 cut(s)	178, 944
Aor13HI	TCCGGA	1 cut(s)	219
AoxI	GGCC	5 cut(s)	190, 890, 940, 995, 1012
ApeKI	GCWGC	9 cut(s)	172, 281, 284, 399, 448, 623, 806, 1182, 1290
ApoI	RAATTY	3 cut(s)	322, 1198, 1232
Asp700I	GAANNNNTTC	1 cut(s)	1236
AspLEI	GCGC	3 cut(s)	127, 177, 660
AspS9I	GGNCC	4 cut(s)	190, 891, 941, 1164
AsuC2I	CCSGG	1 cut(s)	122
AsuHPI	GGTGA	5 cut(s)	687, 785, 797, 839, 924
AvaII	GGWCC	1 cut(s)	1164
AxyI	CCTNAGG	2 cut(s)	570, 699
BauI	CACGAG	1 cut(s)	967
BbvI	GCAGC	9 cut(s)	184, 268, 296, 411, 460, 635, 818, 1194, 1277
BccI	CCATC	4 cut(s)	283, 388, 983, 1045
BceAI	ACGGC	2 cut(s)	55, 999
BciT130I	CCWGG	2 cut(s)	597, 945
BclI	TGATCA	1 cut(s)	166
BcnI	CCSGG	1 cut(s)	122
BcoDI	GTCTC	3 cut(s)	39, 456, 1253
BfaI	CTAG	4 cut(s)	107, 870, 888, 983
BfmI	CTRYAG	2 cut(s)	282, 936
BfoI	RGCGCY	2 cut(s)	128, 178
BfuAI	ACCTGC	1 cut(s)	1258
Bme1390I	CCNGG	3 cut(s)	122, 597, 945
Bme18I	GGWCC	1 cut(s)	1164
BmeRI	GACNNNNNGTC	1 cut(s)	22
BmgT120I	GGNCC	4 cut(s)	190, 891, 941, 1164
BmiI	GGNNCC	4 cut(s)	13, 82, 893, 1165
BmrFI	CCNGG	3 cut(s)	122, 597, 945
BmrI	ACTGGG	1 cut(s)	1168
BmsI	GCATC	7 cut(s)	108, 645, 766, 767, 1050, 1057, 1209
BmuI	ACTGGG	1 cut(s)	1168
BpmI	CTGGAG	1 cut(s)	966
Bpu10I	CCTNAGC	1 cut(s)	636
BpuEI	CTTGAG	1 cut(s)	113
BpuMI	CCSGG	1 cut(s)	122
BsaBI	GATNNNNATC	1 cut(s)	564
BsaHI	GRCGYC	1 cut(s)	111
BsaJI	CCNNGG	4 cut(s)	765, 823, 926, 943
BsaWI	WCCGGW	1 cut(s)	219
BsaXI	ACNNNNNCTCC	6 cut(s)	36, 66, 214, 244, 1115, 1145
Bsc4I	CCNNNNNNNGG	6 cut(s)	120, 336, 337, 575, 927, 985
Bse1I	ACTGG	3 cut(s)	409, 1024, 1174
Bse21I	CCTNAGG	2 cut(s)	570, 699
Bse3DI	GCAATG	1 cut(s)	388
Bse8I	GATNNNNATC	1 cut(s)	564
BseAI	TCCGGA	1 cut(s)	219
BseBI	CCWGG	2 cut(s)	597, 945
BseDI	CCNNGG	4 cut(s)	765, 823, 926, 943
BseGI	GGATG	4 cut(s)	399, 474, 994, 1072
BseJI	GATNNNNATC	1 cut(s)	564
BseLI	CCNNNNNNNGG	6 cut(s)	120, 336, 337, 575, 927, 985
BseMI	GCAATG	1 cut(s)	388
BseMII	CTCAG	7 cut(s)	561, 627, 690, 860, 1124, 1154, 1248
BseNI	ACTGG	3 cut(s)	409, 1024, 1174
BseXI	GCAGC	9 cut(s)	184, 268, 296, 411, 460, 635, 818, 1194, 1277
BseYI	CCCAGC	3 cut(s)	74, 779, 1099
BsgI	GTGCAG	1 cut(s)	467
Bsh1236I	CGCG	1 cut(s)	23
BshFI	GGCC	5 cut(s)	192, 892, 942, 997, 1014
BsiSI	CCGG	4 cut(s)	121, 161, 193, 220
BslFI	GGGAC	2 cut(s)	803, 896
BslI	CCNNNNNNNGG	6 cut(s)	120, 336, 337, 575, 927, 985
BsmAI	GTCTC	3 cut(s)	39, 456, 1253
BsmBI	CGTCTC	1 cut(s)	39
BsmFI	GGGAC	2 cut(s)	803, 896
BsmI	GAATGC	1 cut(s)	760
BsnI	GGCC	5 cut(s)	192, 892, 942, 997, 1014
Bsp13I	TCCGGA	1 cut(s)	219
Bsp1407I	TGTACA	2 cut(s)	736, 1090
Bsp143I	GATC	9 cut(s)	166, 195, 208, 241, 347, 374, 419, 559, 592
Bsp19I	CCATGG	2 cut(s)	765, 926
BspACI	CCGC	6 cut(s)	9, 42, 78, 93, 998, 1071
BspANI	GGCC	5 cut(s)	192, 892, 942, 997, 1014
BspCNI	CTCAG	7 cut(s)	562, 628, 691, 859, 1123, 1153, 1249
BspEI	TCCGGA	1 cut(s)	219
BspFNI	CGCG	1 cut(s)	23
BspLI	GGNNCC	4 cut(s)	13, 82, 893, 1165
BspMAI	CTGCAG	1 cut(s)	286
BspMI	ACCTGC	1 cut(s)	1258
BspPI	GGATC	5 cut(s)	203, 355, 382, 427, 587
BsrBI	CCGCTC	1 cut(s)	95
BsrDI	GCAATG	1 cut(s)	388
BsrGI	TGTACA	2 cut(s)	736, 1090
BsrI	ACTGG	3 cut(s)	409, 1024, 1174
BssECI	CCNNGG	4 cut(s)	765, 823, 926, 943
BssMI	GATC	9 cut(s)	166, 195, 208, 241, 347, 374, 419, 559, 592
BssNI	GRCGYC	1 cut(s)	111
BssSI	CACGAG	1 cut(s)	967
BssT1I	CCWWGG	3 cut(s)	765, 823, 926
Bst2BI	CACGAG	1 cut(s)	967
Bst2UI	CCWGG	2 cut(s)	597, 945
Bst4CI	ACNGT	5 cut(s)	118, 230, 665, 910, 1309
BstACI	GRCGYC	1 cut(s)	111
BstAPI	GCANNNNNTGC	3 cut(s)	245, 278, 308
BstAUI	TGTACA	2 cut(s)	736, 1090
BstC8I	GCNNGC	3 cut(s)	97, 1012, 1187
BstDSI	CCRYGG	2 cut(s)	765, 926
BstEII	GGTNACC	1 cut(s)	930
BstENI	CCTNNNNNAGG	1 cut(s)	573
BstF5I	GGATG	4 cut(s)	399, 474, 994, 1072
BstFNI	CGCG	1 cut(s)	23
BstH2I	RGCGCY	2 cut(s)	128, 178
BstHHI	GCGC	3 cut(s)	127, 177, 660
BstKTI	GATC	9 cut(s)	169, 198, 211, 244, 350, 377, 422, 562, 595
BstMAI	GTCTC	3 cut(s)	39, 456, 1253
BstMBI	GATC	9 cut(s)	166, 195, 208, 241, 347, 374, 419, 559, 592
BstMWI	GCNNNNNNNGC	7 cut(s)	20, 245, 278, 293, 308, 776, 1296
BstNI	CCWGG	2 cut(s)	597, 945
BstNSI	RCATGY	2 cut(s)	715, 1189
BstPI	GGTNACC	1 cut(s)	930
BstSCI	CCNGG	3 cut(s)	120, 595, 943
BstSFI	CTRYAG	2 cut(s)	282, 936
BstUI	CGCG	1 cut(s)	23
BstV1I	GCAGC	9 cut(s)	184, 268, 296, 411, 460, 635, 818, 1194, 1277
BstX2I	RGATCY	3 cut(s)	195, 347, 374
BstYI	RGATCY	3 cut(s)	195, 347, 374
Bsu36I	CCTNAGG	2 cut(s)	570, 699
BsuRI	GGCC	5 cut(s)	192, 892, 942, 997, 1014
BtgI	CCRYGG	2 cut(s)	765, 926
BtgZI	GCGATG	1 cut(s)	1073
BtsCI	GGATG	4 cut(s)	399, 474, 994, 1072
BtsI	GCAGTG	1 cut(s)	291
BtsIMutI	CAGTG	4 cut(s)	291, 402, 504, 670
BveI	ACCTGC	1 cut(s)	1258
Cac8I	GCNNGC	3 cut(s)	97, 1012, 1187
CaiI	CAGNNNCTG	2 cut(s)	178, 944
CfoI	GCGC	3 cut(s)	127, 177, 660
Cfr13I	GGNCC	4 cut(s)	190, 891, 941, 1164
CseI	GACGC	3 cut(s)	12, 29, 119
Csp6I	GTAC	3 cut(s)	737, 1017, 1091
CviAII	CATG	8 cut(s)	245, 511, 523, 712, 766, 927, 1117, 1186
CviQI	GTAC	3 cut(s)	737, 1017, 1091
DpnI	GATC	9 cut(s)	168, 197, 210, 243, 349, 376, 421, 561, 594
DpnII	GATC	9 cut(s)	166, 195, 208, 241, 347, 374, 419, 559, 592
DrdI	GACNNNNNNGTC	1 cut(s)	116
DriI	GACNNNNNGTC	1 cut(s)	22
DseDI	GACNNNNNNGTC	1 cut(s)	116
EaeI	YGGCCR	1 cut(s)	1012
Eam1105I	GACNNNNNGTC	1 cut(s)	22
EciI	GGCGGA	2 cut(s)	24, 57
Eco130I	CCWWGG	3 cut(s)	765, 823, 926
Eco47I	GGWCC	1 cut(s)	1164
Eco81I	CCTNAGG	2 cut(s)	570, 699
Eco91I	GGTNACC	1 cut(s)	930
EcoNI	CCTNNNNNAGG	1 cut(s)	573
EcoO109I	RGGNCCY	2 cut(s)	891, 941
EcoO65I	GGTNACC	1 cut(s)	930
EcoRII	CCWGG	2 cut(s)	595, 943
EcoT14I	CCWWGG	3 cut(s)	765, 823, 926
EcoT22I	ATGCAT	2 cut(s)	760, 1301
ErhI	CCWWGG	3 cut(s)	765, 823, 926
Esp3I	CGTCTC	1 cut(s)	39
FaeI	CATG	8 cut(s)	248, 514, 526, 715, 769, 930, 1120, 1189
FaqI	GGGAC	2 cut(s)	803, 896
FatI	CATG	8 cut(s)	244, 510, 522, 711, 765, 926, 1116, 1185
FauNDI	CATATG	1 cut(s)	1295
FbaI	TGATCA	1 cut(s)	166
FblI	GTMKAC	1 cut(s)	26
FokI	GGATG	4 cut(s)	406, 461, 1001, 1079
FspBI	CTAG	4 cut(s)	107, 870, 888, 983
FspI	TGCGCA	1 cut(s)	659
GlaI	GCGC	3 cut(s)	126, 176, 659
GsaI	CCCAGC	3 cut(s)	78, 783, 1103
GsuI	CTGGAG	1 cut(s)	966
HaeII	RGCGCY	2 cut(s)	128, 178
HaeIII	GGCC	5 cut(s)	192, 892, 942, 997, 1014
HapII	CCGG	4 cut(s)	121, 161, 193, 220
HgaI	GACGC	3 cut(s)	12, 29, 119
HhaI	GCGC	3 cut(s)	127, 177, 660
Hin1I	GRCGYC	1 cut(s)	111
Hin1II	CATG	8 cut(s)	248, 514, 526, 715, 769, 930, 1120, 1189
Hin6I	GCGC	3 cut(s)	125, 175, 658
HinP1I	GCGC	3 cut(s)	125, 175, 658
HincII	GTYRAC	2 cut(s)	27, 852
HindII	GTYRAC	2 cut(s)	27, 852
HindIII	AAGCTT	1 cut(s)	690
HinfI	GANTC	7 cut(s)	51, 214, 565, 878, 1081, 1156, 1193
HpaII	CCGG	4 cut(s)	121, 161, 193, 220
HphI	GGTGA	5 cut(s)	687, 785, 797, 839, 924
Hpy166II	GTNNAC	3 cut(s)	27, 253, 852
Hpy188I	TCNGA	8 cut(s)	37, 68, 213, 564, 612, 877, 1143, 1168
Hpy188III	TCNNGA	5 cut(s)	220, 431, 569, 1034, 1256
Hpy8I	GTNNAC	3 cut(s)	27, 253, 852
Hpy99I	CGWCG	3 cut(s)	20, 23, 28
HpyCH4III	ACNGT	5 cut(s)	118, 230, 665, 910, 1309
HpyCH4IV	ACGT	3 cut(s)	63, 582, 721
HpyF10VI	GCNNNNNNNGC	7 cut(s)	20, 245, 278, 293, 308, 776, 1296
HpySE526I	ACGT	3 cut(s)	63, 582, 721
Hsp92I	GRCGYC	1 cut(s)	111
Hsp92II	CATG	8 cut(s)	248, 514, 526, 715, 769, 930, 1120, 1189
HspAI	GCGC	3 cut(s)	125, 175, 658
Kpn2I	TCCGGA	1 cut(s)	219
Ksp22I	TGATCA	1 cut(s)	166
Kzo9I	GATC	9 cut(s)	166, 195, 208, 241, 347, 374, 419, 559, 592
LmnI	GCTCC	5 cut(s)	11, 86, 222, 362, 904
Lsp1109I	GCAGC	9 cut(s)	184, 268, 296, 411, 460, 635, 818, 1194, 1277
LweI	GCATC	7 cut(s)	108, 645, 766, 767, 1050, 1057, 1209
MaeI	CTAG	4 cut(s)	107, 870, 888, 983
MaeII	ACGT	3 cut(s)	63, 582, 721
MaeIII	GTNAC	4 cut(s)	665, 680, 930, 1176
MalI	GATC	9 cut(s)	168, 197, 210, 243, 349, 376, 421, 561, 594
MbiI	CCGCTC	1 cut(s)	95
MboI	GATC	9 cut(s)	166, 195, 208, 241, 347, 374, 419, 559, 592
MflI	RGATCY	3 cut(s)	195, 347, 374
MluCI	AATT	7 cut(s)	322, 455, 552, 1198, 1232, 1278, 1312
MluI	ACGCGT	1 cut(s)	21
MlyI	GAGTC	2 cut(s)	60, 208
MmeI	TCCRAC	1 cut(s)	1191
Mph1103I	ATGCAT	2 cut(s)	760, 1301
MroI	TCCGGA	1 cut(s)	219
MroXI	GAANNNNTTC	1 cut(s)	1236
MseI	TTAA	3 cut(s)	200, 708, 1311
MslI	CAYNNNNRTG	2 cut(s)	509, 527
MspA1I	CMGCKG	3 cut(s)	78, 1010, 1103
MspI	CCGG	4 cut(s)	121, 161, 193, 220
MspR9I	CCNGG	3 cut(s)	122, 597, 945
Mva1269I	GAATGC	1 cut(s)	760
MvaI	CCWGG	2 cut(s)	597, 945
MvnI	CGCG	1 cut(s)	23
MwoI	GCNNNNNNNGC	7 cut(s)	20, 245, 278, 293, 308, 776, 1296
NciI	CCSGG	1 cut(s)	122
NcoI	CCATGG	2 cut(s)	765, 926
NdeI	CATATG	1 cut(s)	1295
NdeII	GATC	9 cut(s)	166, 195, 208, 241, 347, 374, 419, 559, 592
NlaIII	CATG	8 cut(s)	248, 514, 526, 715, 769, 930, 1120, 1189
NlaIV	GGNNCC	4 cut(s)	13, 82, 893, 1165
NmuCI	GTSAC	2 cut(s)	665, 930
NsbI	TGCGCA	1 cut(s)	659
NsiI	ATGCAT	2 cut(s)	760, 1301
NspI	RCATGY	2 cut(s)	715, 1189
PaeI	GCATGC	1 cut(s)	1189
PcsI	WCGNNNNNNNCGW	1 cut(s)	1055
PctI	GAATGC	1 cut(s)	760
PdmI	GAANNNNTTC	1 cut(s)	1236
PfeI	GAWTC	5 cut(s)	565, 878, 1081, 1156, 1193
PflFI	GACNNNGTC	1 cut(s)	50
PflMI	CCANNNNNTGG	1 cut(s)	927
PleI	GAGTC	2 cut(s)	59, 208
PpsI	GAGTC	2 cut(s)	59, 208
PsiI	TTATAA	1 cut(s)	1336
Psp6I	CCWGG	2 cut(s)	595, 943
PspEI	GGTNACC	1 cut(s)	930
PspFI	CCCAGC	3 cut(s)	74, 779, 1099
PspGI	CCWGG	2 cut(s)	595, 943
PspN4I	GGNNCC	4 cut(s)	13, 82, 893, 1165
PspPI	GGNCC	4 cut(s)	190, 891, 941, 1164
PsrI	GAACNNNNNNTAC	2 cut(s)	567, 599
PstI	CTGCAG	1 cut(s)	286
PstNI	CAGNNNCTG	2 cut(s)	178, 944
PsuI	RGATCY	3 cut(s)	195, 347, 374
PsyI	GACNNNGTC	1 cut(s)	50
PvuII	CAGCTG	2 cut(s)	1010, 1103
RsaI	GTAC	3 cut(s)	738, 1018, 1092
RsaNI	GTAC	3 cut(s)	737, 1017, 1091
RseI	CAYNNNNRTG	2 cut(s)	509, 527
SalI	GTCGAC	1 cut(s)	25
SaqAI	TTAA	3 cut(s)	200, 708, 1311
Sau3AI	GATC	9 cut(s)	166, 195, 208, 241, 347, 374, 419, 559, 592
Sau96I	GGNCC	4 cut(s)	190, 891, 941, 1164
SchI	GAGTC	2 cut(s)	60, 208
ScrFI	CCNGG	3 cut(s)	122, 597, 945
SfaNI	GCATC	7 cut(s)	108, 645, 766, 767, 1050, 1057, 1209
SfcI	CTRYAG	2 cut(s)	282, 936
SinI	GGWCC	1 cut(s)	1164
SmiMI	CAYNNNNRTG	2 cut(s)	509, 527
SmlI	CTYRAG	1 cut(s)	128
SmoI	CTYRAG	1 cut(s)	128
SphI	GCATGC	1 cut(s)	1189
Sse9I	AATT	7 cut(s)	322, 455, 552, 1198, 1232, 1278, 1312
SsiI	CCGC	6 cut(s)	9, 42, 78, 93, 998, 1071
SspMI	CTAG	4 cut(s)	107, 870, 888, 983
StyD4I	CCNGG	3 cut(s)	120, 595, 943
StyI	CCWWGG	3 cut(s)	765, 823, 926
TaaI	ACNGT	5 cut(s)	118, 230, 665, 910, 1309
TaiI	ACGT	3 cut(s)	66, 585, 724
TaqI	TCGA	2 cut(s)	26, 974
TasI	AATT	7 cut(s)	322, 455, 552, 1198, 1232, 1278, 1312
TatI	WGTACW	2 cut(s)	736, 1090
TauI	GCSGC	4 cut(s)	81, 95, 1000, 1073
TfiI	GAWTC	5 cut(s)	565, 878, 1081, 1156, 1193
Tru1I	TTAA	3 cut(s)	200, 708, 1311
Tru9I	TTAA	3 cut(s)	200, 708, 1311
TscAI	CASTG	4 cut(s)	298, 409, 511, 670
TseFI	GTSAC	2 cut(s)	665, 930
TseI	GCWGC	9 cut(s)	172, 281, 284, 399, 448, 623, 806, 1182, 1290
Tsp45I	GTSAC	2 cut(s)	665, 930
TspDTI	ATGAA	3 cut(s)	485, 545, 744
TspGWI	ACGGA	1 cut(s)	63
TspRI	CASTG	4 cut(s)	298, 409, 511, 670
Tth111I	GACNNNGTC	1 cut(s)	50
Van91I	CCANNNNNTGG	1 cut(s)	927
VpaK11BI	GGWCC	1 cut(s)	1164
XagI	CCTNNNNNAGG	1 cut(s)	573
XapI	RAATTY	3 cut(s)	322, 1198, 1232
XceI	RCATGY	2 cut(s)	715, 1189
XmiI	GTMKAC	1 cut(s)	26
XmnI	GAANNNNTTC	1 cut(s)	1236
XspI	CTAG	4 cut(s)	107, 870, 888, 983
Zsp2I	ATGCAT	2 cut(s)	760, 1301

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.