Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0007479

Physical Location & Seq

Genomic Coordinates Reverse (-)

10114413 .. 10117930

Gene Structure 3518 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ47236

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1068 bp

ATGCGTGAAATTATTGATCGGAATCCTGAGGTAGGACACGTTCTCAATGATCCTGGCACTATTCGTCAGACACTTGAAGCAGCAAGAAACCCTGAGCTTATGCGTGAGATGATGCGCAACAGTGACAGGGCTATGAGCAACATTGAAGCTTCACCTGAGGGATTTAACATGCTTAGACGTATGTATGAAAATGTACAAGAGCCATTACTGAATGCATCAACCATGGCTGGTGATGCTGGGGGTGATAGTTCAAATCCATTTGCAGCTCTGTTCGTCCCCCAAGGTGAAAACCCAACCAGAACTCAGTCAACTAACTCATCAACTGCTAGTTCTGATTCAGCAACTAGGCCCCCTGCTCCAAATACGGTCCCACTTCCCAACCCATGGTCACCTACAGGCCCTGGAGTTGCCCAAACTAACACCACGAGGTCGAACCCTCTAGGGGATGGTAGGCCGCAGACACCAGCTGGCCGTACTGGACTTAGTTTTCCAGAGTTTGAAGCCACGATGGGTGCGATGCAGGATGCCGCTTTACTGAATCAGGCCGTACAAAACCCAGCTGTTTCTCAGCTCATGCAAAACATCATCTCCAATCCTCAGAATATGAGTGAGAATCTTGGGTCCGACCCCCAGTTACGCAGCATGCTTGATTCAAATTCTTTCTTTAGAGAAATGATGCAAAACCCTGAATTTTTTCGTCAGTTGGCTTCTCCTGAGACTATGCAGTTATTCTTGATTTTGCTACAATCACTTATGTTGCTGCTAGGTGACCAACAACAACAATCAACCCAGGAACCAGGAGAGACAGGACAGACTGGTGGAGACACAGGATCAGTTGATAGCATGGGGTTAGAGATGCTGATGAACATGTTTGGTGGGCTTGGCACTGGCAGCCCGGCTGTTCCCAACAGACCAAATGTGCCACCGGAGGAACTCTATGCTGCACAGCTTTCACAACTTCAGGAGATGGGTTTCTTTGATAGACAAGAGAACATACGGGCTCTGATGACCACTGCAGGAAATGTCCATGCAGCAGTAGAGCGACTGTTGGGGAATTCTGGTCGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

UBA ubiquitin

Protein Analysis

355

Amino Acids

38.44

Weight (kDa)

4.55

Isoelectric Point (pI)

57.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UBQLN1	PF23195	1 - 87	4.7e-33	Ubiquilin-1-like domain
UBQLN1	PF23195	173 - 235	3.4e-06	Ubiquilin-1-like domain
UBA	PF00627	313 - 349	3e-08	UBA/TS-N domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007479)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g10501 FvH4_1g10501 FvH4_1g10501 FvH4_1g10501
malus_domestica	MD02G1118900.v1.1 MD15G1232900.v1.1
prunus_persica	Prupe.7G181000_v2.0.a1 Prupe.7G181000_v2.0.a1 Prupe.7G181000_v2.0.a1
pyrus_communis	pycom15g20740
rosa_chinensis	RchiOBHm_Chr2g0097401 RchiOBHm_Chr2g0097491
rosa_laevigata	RLG00000016723
rosa_roxburghii	Rroxscaffold_2G00144720
rosa_rugosa	Rorug02G0066300 Rorug02G0066400 Rorug02G0066500 Rorug02G0066600 Rorug02G0066700 Rorug02G0066700
rosa_samantha	Rh2AG113000 Rh2BG116000 Rh2CG118000 Rh2DG117100
rosa_wichuraiana	Rw2G008850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	116
AccB7I	CCANNNNNTGG	1 cut(s)	384
AciI	CCGC	2 cut(s)	455, 528
AclWI	GGATC	2 cut(s)	44, 838
AcoI	YGGCCR	1 cut(s)	469
AcsI	RAATTY	3 cut(s)	655, 689, 1054
AcuI	CTGAAG	1 cut(s)	944
AfaI	GTAC	3 cut(s)	195, 475, 549
AfiI	CCNNNNNNNGG	3 cut(s)	32, 384, 442
AflIII	ACRYGT	2 cut(s)	37, 867
AgsI	TTSAA	5 cut(s)	77, 146, 252, 500, 654
AjnI	CCWGG	4 cut(s)	52, 400, 789, 796
AluBI	AGCT	7 cut(s)	97, 149, 266, 467, 560, 571, 949
AluI	AGCT	7 cut(s)	97, 149, 266, 467, 560, 571, 949
Alw26I	GTCTC	3 cut(s)	710, 797, 816
AlwI	GGATC	2 cut(s)	44, 838
AlwNI	CAGNNNCTG	1 cut(s)	401
AoxI	GGCC	5 cut(s)	347, 397, 452, 469, 543
ApeKI	GCWGC	7 cut(s)	80, 263, 639, 760, 891, 941, 1031
ApoI	RAATTY	3 cut(s)	655, 689, 1054
Asp700I	GAANNNNTTC	1 cut(s)	693
AspLEI	GCGC	1 cut(s)	117
AspS9I	GGNCC	4 cut(s)	348, 367, 398, 621
AsuC2I	CCSGG	1 cut(s)	896
AsuHPI	GGTGA	6 cut(s)	144, 242, 254, 296, 381, 779
AvaII	GGWCC	2 cut(s)	367, 621
AxyI	CCTNAGG	2 cut(s)	27, 156
BanII	GRGCYC	1 cut(s)	1003
BauI	CACGAG	1 cut(s)	424
BbvI	GCAGC	7 cut(s)	92, 275, 651, 747, 903, 928, 1043
BccI	CCATC	3 cut(s)	440, 502, 961
BceAI	ACGGC	2 cut(s)	456, 530
BciT130I	CCWGG	4 cut(s)	54, 402, 791, 798
BcnI	CCSGG	1 cut(s)	896
BcoDI	GTCTC	3 cut(s)	710, 797, 816
BfaI	CTAG	4 cut(s)	327, 345, 440, 764
BfmI	CTRYAG	2 cut(s)	393, 1014
BisI	GCNGC	9 cut(s)	81, 264, 455, 528, 640, 761, 892, 942, 1032
BlsI	GCNGC	9 cut(s)	82, 265, 456, 529, 641, 762, 893, 943, 1033
Bme1390I	CCNGG	5 cut(s)	54, 402, 791, 798, 896
Bme18I	GGWCC	2 cut(s)	367, 621
BmgT120I	GGNCC	4 cut(s)	348, 367, 398, 621
BmiI	GGNNCC	4 cut(s)	350, 369, 622, 795
BmrFI	CCNGG	5 cut(s)	54, 402, 791, 798, 896
BmrI	ACTGGG	1 cut(s)	625
BmsI	GCATC	7 cut(s)	102, 223, 224, 507, 514, 666, 846
BmuI	ACTGGG	1 cut(s)	625
BpmI	CTGGAG	1 cut(s)	423
Bpu10I	CCTNAGC	1 cut(s)	93
BpuMI	CCSGG	1 cut(s)	896
BsaBI	GATNNNNATC	1 cut(s)	21
BsaJI	CCNNGG	5 cut(s)	222, 280, 383, 400, 789
BsaWI	WCCGGW	1 cut(s)	925
BsaXI	ACNNNNNCTCC	2 cut(s)	572, 602
Bsc4I	CCNNNNNNNGG	3 cut(s)	32, 384, 442
Bse1I	ACTGG	4 cut(s)	481, 631, 820, 892
Bse21I	CCTNAGG	2 cut(s)	27, 156
Bse8I	GATNNNNATC	1 cut(s)	21
BseBI	CCWGG	4 cut(s)	54, 402, 791, 798
BseDI	CCNNGG	5 cut(s)	222, 280, 383, 400, 789
BseGI	GGATG	2 cut(s)	451, 529
BseJI	GATNNNNATC	1 cut(s)	21
BseLI	CCNNNNNNNGG	3 cut(s)	32, 384, 442
BseMII	CTCAG	7 cut(s)	18, 84, 147, 317, 581, 611, 705
BseNI	ACTGG	4 cut(s)	481, 631, 820, 892
BseXI	GCAGC	7 cut(s)	92, 275, 651, 747, 903, 928, 1043
BseYI	CCCAGC	2 cut(s)	236, 556
BsgI	GTGCAG	1 cut(s)	927
BshFI	GGCC	5 cut(s)	349, 399, 454, 471, 545
BsiSI	CCGG	2 cut(s)	896, 926
BslFI	GGGAC	2 cut(s)	260, 353
BslI	CCNNNNNNNGG	3 cut(s)	32, 384, 442
BsmAI	GTCTC	3 cut(s)	710, 797, 816
BsmFI	GGGAC	2 cut(s)	260, 353
BsmI	GAATGC	1 cut(s)	217
BsnI	GGCC	5 cut(s)	349, 399, 454, 471, 545
Bsp1286I	GDGCHC	1 cut(s)	1003
Bsp1407I	TGTACA	1 cut(s)	193
Bsp143I	GATC	3 cut(s)	16, 49, 830
Bsp19I	CCATGG	2 cut(s)	222, 383
BspACI	CCGC	2 cut(s)	455, 528
BspANI	GGCC	5 cut(s)	349, 399, 454, 471, 545
BspCNI	CTCAG	7 cut(s)	19, 85, 148, 316, 580, 610, 706
BspLI	GGNNCC	4 cut(s)	350, 369, 622, 795
BspMAI	CTGCAG	1 cut(s)	1018
BspPI	GGATC	2 cut(s)	44, 838
BsrGI	TGTACA	1 cut(s)	193
BsrI	ACTGG	4 cut(s)	481, 631, 820, 892
BssECI	CCNNGG	5 cut(s)	222, 280, 383, 400, 789
BssMI	GATC	3 cut(s)	16, 49, 830
BssSI	CACGAG	1 cut(s)	424
BssT1I	CCWWGG	3 cut(s)	222, 280, 383
Bst2BI	CACGAG	1 cut(s)	424
Bst2UI	CCWGG	4 cut(s)	54, 402, 791, 798
Bst4CI	ACNGT	3 cut(s)	122, 367, 1047
BstAUI	TGTACA	1 cut(s)	193
BstC8I	GCNNGC	2 cut(s)	469, 644
BstDEI	CTNAG	9 cut(s)	27, 93, 156, 173, 303, 482, 567, 597, 714
BstDSI	CCRYGG	2 cut(s)	222, 383
BstEII	GGTNACC	2 cut(s)	387, 767
BstENI	CCTNNNNNAGG	1 cut(s)	30
BstF5I	GGATG	2 cut(s)	451, 529
BstHHI	GCGC	1 cut(s)	117
BstKTI	GATC	3 cut(s)	19, 52, 833
BstMAI	GTCTC	3 cut(s)	710, 797, 816
BstMBI	GATC	3 cut(s)	16, 49, 830
BstMWI	GCNNNNNNNGC	2 cut(s)	233, 891
BstNI	CCWGG	4 cut(s)	54, 402, 791, 798
BstNSI	RCATGY	3 cut(s)	172, 646, 871
BstPI	GGTNACC	2 cut(s)	387, 767
BstSCI	CCNGG	5 cut(s)	52, 400, 789, 796, 894
BstSFI	CTRYAG	2 cut(s)	393, 1014
BstV1I	GCAGC	7 cut(s)	92, 275, 651, 747, 903, 928, 1043
Bsu36I	CCTNAGG	2 cut(s)	27, 156
BsuRI	GGCC	5 cut(s)	349, 399, 454, 471, 545
BtgI	CCRYGG	2 cut(s)	222, 383
BtgZI	GCGATG	1 cut(s)	530
BtsCI	GGATG	2 cut(s)	451, 529
BtsI	GCAGTG	1 cut(s)	1011
BtsIMutI	CAGTG	3 cut(s)	127, 885, 1011
Cac8I	GCNNGC	2 cut(s)	469, 644
CaiI	CAGNNNCTG	1 cut(s)	401
CfoI	GCGC	1 cut(s)	117
Cfr13I	GGNCC	4 cut(s)	348, 367, 398, 621
Csp6I	GTAC	3 cut(s)	194, 474, 548
CviAII	CATG	8 cut(s)	169, 223, 384, 574, 643, 844, 868, 1028
CviQI	GTAC	3 cut(s)	194, 474, 548
DdeI	CTNAG	9 cut(s)	27, 93, 156, 173, 303, 482, 567, 597, 714
DpnI	GATC	3 cut(s)	18, 51, 832
DpnII	GATC	3 cut(s)	16, 49, 830
EaeI	YGGCCR	1 cut(s)	469
Eco130I	CCWWGG	3 cut(s)	222, 280, 383
Eco24I	GRGCYC	1 cut(s)	1003
Eco47I	GGWCC	2 cut(s)	367, 621
Eco57I	CTGAAG	1 cut(s)	944
Eco81I	CCTNAGG	2 cut(s)	27, 156
Eco91I	GGTNACC	2 cut(s)	387, 767
EcoNI	CCTNNNNNAGG	1 cut(s)	30
EcoO109I	RGGNCCY	2 cut(s)	348, 398
EcoO65I	GGTNACC	2 cut(s)	387, 767
EcoRI	GAATTC	1 cut(s)	1054
EcoRII	CCWGG	4 cut(s)	52, 400, 789, 796
EcoT14I	CCWWGG	3 cut(s)	222, 280, 383
EcoT22I	ATGCAT	1 cut(s)	217
EcoT38I	GRGCYC	1 cut(s)	1003
ErhI	CCWWGG	3 cut(s)	222, 280, 383
FaeI	CATG	8 cut(s)	172, 226, 387, 577, 646, 847, 871, 1031
FaqI	GGGAC	2 cut(s)	260, 353
FatI	CATG	8 cut(s)	168, 222, 383, 573, 642, 843, 867, 1027
Fnu4HI	GCNGC	9 cut(s)	81, 264, 455, 528, 640, 761, 892, 942, 1032
FokI	GGATG	2 cut(s)	458, 536
FriOI	GRGCYC	1 cut(s)	1003
Fsp4HI	GCNGC	9 cut(s)	81, 264, 455, 528, 640, 761, 892, 942, 1032
FspBI	CTAG	4 cut(s)	327, 345, 440, 764
FspI	TGCGCA	1 cut(s)	116
GlaI	GCGC	1 cut(s)	116
GluI	GCNGC	9 cut(s)	81, 264, 455, 528, 640, 761, 892, 942, 1032
GsaI	CCCAGC	2 cut(s)	240, 560
GsuI	CTGGAG	1 cut(s)	423
HaeIII	GGCC	5 cut(s)	349, 399, 454, 471, 545
HapII	CCGG	2 cut(s)	896, 926
HhaI	GCGC	1 cut(s)	117
Hin1II	CATG	8 cut(s)	172, 226, 387, 577, 646, 847, 871, 1031
Hin6I	GCGC	1 cut(s)	115
HinP1I	GCGC	1 cut(s)	115
HincII	GTYRAC	1 cut(s)	309
HindII	GTYRAC	1 cut(s)	309
HindIII	AAGCTT	1 cut(s)	147
HinfI	GANTC	5 cut(s)	22, 335, 538, 613, 650
HpaII	CCGG	2 cut(s)	896, 926
HphI	GGTGA	6 cut(s)	144, 242, 254, 296, 381, 779
Hpy166II	GTNNAC	1 cut(s)	309
Hpy188I	TCNGA	6 cut(s)	21, 69, 334, 600, 625, 1005
Hpy188III	TCNNGA	5 cut(s)	26, 491, 713, 733, 962
Hpy8I	GTNNAC	1 cut(s)	309
HpyCH4III	ACNGT	3 cut(s)	122, 367, 1047
HpyCH4IV	ACGT	2 cut(s)	39, 178
HpyCH4V	TGCA	9 cut(s)	215, 263, 520, 577, 679, 724, 944, 1016, 1031
HpyF10VI	GCNNNNNNNGC	2 cut(s)	233, 891
HpyF3I	CTNAG	9 cut(s)	27, 93, 156, 173, 303, 482, 567, 597, 714
HpySE526I	ACGT	2 cut(s)	39, 178
Hsp92II	CATG	8 cut(s)	172, 226, 387, 577, 646, 847, 871, 1031
HspAI	GCGC	1 cut(s)	115
Kzo9I	GATC	3 cut(s)	16, 49, 830
LmnI	GCTCC	1 cut(s)	361
Lsp1109I	GCAGC	7 cut(s)	92, 275, 651, 747, 903, 928, 1043
LweI	GCATC	7 cut(s)	102, 223, 224, 507, 514, 666, 846
MaeI	CTAG	4 cut(s)	327, 345, 440, 764
MaeII	ACGT	2 cut(s)	39, 178
MaeIII	GTNAC	4 cut(s)	122, 387, 633, 767
MalI	GATC	3 cut(s)	18, 51, 832
MboI	GATC	3 cut(s)	16, 49, 830
MhlI	GDGCHC	1 cut(s)	1003
MluCI	AATT	4 cut(s)	9, 655, 689, 1054
MmeI	TCCRAC	1 cut(s)	648
MnlI	CCTC	6 cut(s)	22, 151, 420, 447, 606, 922
Mph1103I	ATGCAT	1 cut(s)	217
MroXI	GAANNNNTTC	1 cut(s)	693
MseI	TTAA	1 cut(s)	165
MspA1I	CMGCKG	2 cut(s)	467, 560
MspI	CCGG	2 cut(s)	896, 926
MspR9I	CCNGG	5 cut(s)	54, 402, 791, 798, 896
Mva1269I	GAATGC	1 cut(s)	217
MvaI	CCWGG	4 cut(s)	54, 402, 791, 798
MwoI	GCNNNNNNNGC	2 cut(s)	233, 891
NciI	CCSGG	1 cut(s)	896
NcoI	CCATGG	2 cut(s)	222, 383
NdeII	GATC	3 cut(s)	16, 49, 830
NlaIII	CATG	8 cut(s)	172, 226, 387, 577, 646, 847, 871, 1031
NlaIV	GGNNCC	4 cut(s)	350, 369, 622, 795
NmuCI	GTSAC	3 cut(s)	122, 387, 767
NsbI	TGCGCA	1 cut(s)	116
NsiI	ATGCAT	1 cut(s)	217
NspI	RCATGY	3 cut(s)	172, 646, 871
PaeI	GCATGC	1 cut(s)	646
PciI	ACATGT	1 cut(s)	867
PcsI	WCGNNNNNNNCGW	1 cut(s)	512
PctI	GAATGC	1 cut(s)	217
PdmI	GAANNNNTTC	1 cut(s)	693
PfeI	GAWTC	5 cut(s)	22, 335, 538, 613, 650
PflMI	CCANNNNNTGG	1 cut(s)	384
PkrI	GCNGC	9 cut(s)	82, 265, 456, 529, 641, 762, 893, 943, 1033
PscI	ACATGT	1 cut(s)	867
Psp6I	CCWGG	4 cut(s)	52, 400, 789, 796
PspEI	GGTNACC	2 cut(s)	387, 767
PspFI	CCCAGC	2 cut(s)	236, 556
PspGI	CCWGG	4 cut(s)	52, 400, 789, 796
PspN4I	GGNNCC	4 cut(s)	350, 369, 622, 795
PspPI	GGNCC	4 cut(s)	348, 367, 398, 621
PsrI	GAACNNNNNNTAC	2 cut(s)	24, 56
PstI	CTGCAG	1 cut(s)	1018
PstNI	CAGNNNCTG	1 cut(s)	401
PvuII	CAGCTG	2 cut(s)	467, 560
RsaI	GTAC	3 cut(s)	195, 475, 549
RsaNI	GTAC	3 cut(s)	194, 474, 548
SaqAI	TTAA	1 cut(s)	165
SatI	GCNGC	9 cut(s)	81, 264, 455, 528, 640, 761, 892, 942, 1032
Sau3AI	GATC	3 cut(s)	16, 49, 830
Sau96I	GGNCC	4 cut(s)	348, 367, 398, 621
ScrFI	CCNGG	5 cut(s)	54, 402, 791, 798, 896
SduI	GDGCHC	1 cut(s)	1003
SfaNI	GCATC	7 cut(s)	102, 223, 224, 507, 514, 666, 846
SfcI	CTRYAG	2 cut(s)	393, 1014
SinI	GGWCC	2 cut(s)	367, 621
SphI	GCATGC	1 cut(s)	646
Sse9I	AATT	4 cut(s)	9, 655, 689, 1054
SsiI	CCGC	2 cut(s)	455, 528
SspMI	CTAG	4 cut(s)	327, 345, 440, 764
StyD4I	CCNGG	5 cut(s)	52, 400, 789, 796, 894
StyI	CCWWGG	3 cut(s)	222, 280, 383
TaaI	ACNGT	3 cut(s)	122, 367, 1047
TaiI	ACGT	2 cut(s)	42, 181
TaqI	TCGA	2 cut(s)	431, 1063
TasI	AATT	4 cut(s)	9, 655, 689, 1054
TatI	WGTACW	1 cut(s)	193
TauI	GCSGC	2 cut(s)	457, 530
TfiI	GAWTC	5 cut(s)	22, 335, 538, 613, 650
Tru1I	TTAA	1 cut(s)	165
Tru9I	TTAA	1 cut(s)	165
TscAI	CASTG	3 cut(s)	127, 892, 1018
TseFI	GTSAC	3 cut(s)	122, 387, 767
TseI	GCWGC	7 cut(s)	80, 263, 639, 760, 891, 941, 1031
Tsp45I	GTSAC	3 cut(s)	122, 387, 767
TspDTI	ATGAA	2 cut(s)	201, 878
TspRI	CASTG	3 cut(s)	127, 892, 1018
Van91I	CCANNNNNTGG	1 cut(s)	384
VpaK11BI	GGWCC	2 cut(s)	367, 621
XagI	CCTNNNNNAGG	1 cut(s)	30
XapI	RAATTY	3 cut(s)	655, 689, 1054
XceI	RCATGY	3 cut(s)	172, 646, 871
XmnI	GAANNNNTTC	1 cut(s)	693
XspI	CTAG	4 cut(s)	327, 345, 440, 764
Zsp2I	ATGCAT	1 cut(s)	217

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.