DNA replication licensing factor
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G07690 AT2G07690 |
| fragaria_vesca | FvH4_1g01490 |
| malus_domestica | MD02G1011900.v1.1 MD15G1157500.v1.1 |
| prunus_persica | Prupe.7G252700_v2.0.a1 |
| pyrus_communis | pycom15g14130 |
| rosa_chinensis | RchiOBHm_Chr2g0086411 |
| rosa_laevigata | RLG00000015756 |
| rosa_multiflora | Rmu_sc0005127.1_g000006 |
| rosa_roxburghii | Rroxscaffold_2G00154600 |
| rosa_rugosa | Rorug01G0467200 |
| rosa_samantha | Rh2AG017800 Rh2DG019100 |
| rosa_wichuraiana | Rw2G001480 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 2138 |
| AatII | GACGTC | 1 cut(s) | 2185 |
| Acc36I | ACCTGC | 2 cut(s) | 210, 1744 |
| AccB1I | GGYRCC | 1 cut(s) | 367 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 569 |
| AccI | GTMKAC | 2 cut(s) | 210, 1208 |
| AciI | CCGC | 9 cut(s) | 57, 66, 93, 100, 259, 270, 302, 760, 933 |
| AclWI | GGATC | 5 cut(s) | 476, 632, 1087, 1139, 1152 |
| AcoI | YGGCCR | 1 cut(s) | 560 |
| AcsI | RAATTY | 5 cut(s) | 119, 128, 319, 962, 1090 |
| AcuI | CTGAAG | 3 cut(s) | 1197, 1233, 1703 |
| AcyI | GRCGYC | 2 cut(s) | 228, 2182 |
| AfaI | GTAC | 4 cut(s) | 552, 717, 1580, 1708 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 106, 430, 569, 574, 614, 1475 |
| AflII | CTTAAG | 1 cut(s) | 1493 |
| AgsI | TTSAA | 8 cut(s) | 124, 218, 325, 417, 486, 967, 1289, 2165 |
| AjnI | CCWGG | 3 cut(s) | 562, 613, 784 |
| Alw21I | GWGCWC | 2 cut(s) | 2094, 2134 |
| Alw26I | GTCTC | 3 cut(s) | 63, 140, 1780 |
| AlwI | GGATC | 5 cut(s) | 476, 632, 1087, 1139, 1152 |
| AlwNI | CAGNNNCTG | 4 cut(s) | 866, 986, 1235, 1736 |
| Ama87I | CYCGRG | 1 cut(s) | 924 |
| AoxI | GGCC | 4 cut(s) | 560, 565, 1053, 1869 |
| ApoI | RAATTY | 5 cut(s) | 119, 128, 319, 962, 1090 |
| AspLEI | GCGC | 2 cut(s) | 46, 423 |
| AspS9I | GGNCC | 3 cut(s) | 757, 929, 1870 |
| AsuC2I | CCSGG | 4 cut(s) | 75, 339, 466, 1807 |
| AsuHPI | GGTGA | 3 cut(s) | 1130, 1658, 1709 |
| AvaI | CYCGRG | 1 cut(s) | 924 |
| AvaII | GGWCC | 2 cut(s) | 757, 929 |
| AxyI | CCTNAGG | 1 cut(s) | 372 |
| BaeGI | GKGCMC | 2 cut(s) | 339, 436 |
| BamHI | GGATCC | 1 cut(s) | 1144 |
| BanI | GGYRCC | 1 cut(s) | 367 |
| BanII | GRGCYC | 2 cut(s) | 2094, 2134 |
| BauI | CACGAG | 1 cut(s) | 1272 |
| BbsI | GAAGAC | 4 cut(s) | 225, 332, 411, 1193 |
| Bbv12I | GWGCWC | 2 cut(s) | 2094, 2134 |
| BbvCI | CCTCAGC | 1 cut(s) | 609 |
| BccI | CCATC | 7 cut(s) | 771, 809, 1094, 1156, 1307, 1480, 1996 |
| BceAI | ACGGC | 2 cut(s) | 102, 1040 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 230, 264 |
| BciT130I | CCWGG | 3 cut(s) | 564, 615, 786 |
| BclI | TGATCA | 2 cut(s) | 676, 1254 |
| BcnI | CCSGG | 4 cut(s) | 75, 339, 466, 1807 |
| BcoDI | GTCTC | 3 cut(s) | 63, 140, 1780 |
| BfaI | CTAG | 3 cut(s) | 1083, 1440, 1539 |
| BfmI | CTRYAG | 6 cut(s) | 31, 113, 474, 978, 1197, 1751 |
| BfrI | CTTAAG | 1 cut(s) | 1493 |
| BfuAI | ACCTGC | 2 cut(s) | 210, 1744 |
| Bme1390I | CCNGG | 7 cut(s) | 75, 339, 466, 564, 615, 786, 1807 |
| Bme18I | GGWCC | 2 cut(s) | 757, 929 |
| BmeT110I | CYCGRG | 1 cut(s) | 924 |
| BmgT120I | GGNCC | 3 cut(s) | 757, 929, 1870 |
| BmiI | GGNNCC | 5 cut(s) | 369, 654, 931, 1146, 2060 |
| BmrFI | CCNGG | 7 cut(s) | 75, 339, 466, 564, 615, 786, 1807 |
| BmsI | GCATC | 5 cut(s) | 226, 828, 904, 1748, 1945 |
| BpiI | GAAGAC | 4 cut(s) | 225, 332, 411, 1193 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 165, 197, 2116, 2148 |
| BpmI | CTGGAG | 2 cut(s) | 636, 744 |
| Bpu10I | CCTNAGC | 1 cut(s) | 609 |
| BpuEI | CTTGAG | 1 cut(s) | 1157 |
| BpuMI | CCSGG | 4 cut(s) | 75, 339, 466, 1807 |
| BsaAI | YACGTR | 1 cut(s) | 2195 |
| BsaHI | GRCGYC | 2 cut(s) | 228, 2182 |
| BsaI | GGTCTC | 2 cut(s) | 63, 140 |
| BsaJI | CCNNGG | 6 cut(s) | 73, 568, 641, 1056, 1383, 1806 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1287, 1317 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 106, 430, 569, 574, 614, 1475 |
| Bse118I | RCCGGY | 1 cut(s) | 423 |
| Bse1I | ACTGG | 1 cut(s) | 727 |
| Bse21I | CCTNAGG | 1 cut(s) | 372 |
| Bse3DI | GCAATG | 2 cut(s) | 1305, 1404 |
| BseBI | CCWGG | 3 cut(s) | 564, 615, 786 |
| BseDI | CCNNGG | 6 cut(s) | 73, 568, 641, 1056, 1383, 1806 |
| BseGI | GGATG | 7 cut(s) | 382, 718, 1581, 1739, 1960, 2112, 2161 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 106, 430, 569, 574, 614, 1475 |
| BseMI | GCAATG | 2 cut(s) | 1305, 1404 |
| BseMII | CTCAG | 5 cut(s) | 363, 623, 1896, 1989, 2022 |
| BseNI | ACTGG | 1 cut(s) | 727 |
| BseRI | GAGGAG | 2 cut(s) | 173, 1308 |
| BseSI | GKGCMC | 2 cut(s) | 339, 436 |
| BseYI | CCCAGC | 2 cut(s) | 409, 1631 |
| BsgI | GTGCAG | 2 cut(s) | 563, 1485 |
| BshFI | GGCC | 4 cut(s) | 562, 567, 1055, 1871 |
| BshNI | GGYRCC | 1 cut(s) | 367 |
| BsiHKAI | GWGCWC | 2 cut(s) | 2094, 2134 |
| BsiHKCI | CYCGRG | 1 cut(s) | 924 |
| BsiSI | CCGG | 5 cut(s) | 75, 339, 424, 465, 1806 |
| BslFI | GGGAC | 4 cut(s) | 26, 569, 615, 915 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 106, 430, 569, 574, 614, 1475 |
| BsmAI | GTCTC | 3 cut(s) | 63, 140, 1780 |
| BsmFI | GGGAC | 4 cut(s) | 26, 569, 615, 915 |
| BsnI | GGCC | 4 cut(s) | 562, 567, 1055, 1871 |
| Bso31I | GGTCTC | 2 cut(s) | 63, 140 |
| BsoBI | CYCGRG | 1 cut(s) | 924 |
| Bsp1286I | GDGCHC | 4 cut(s) | 339, 436, 2094, 2134 |
| Bsp1407I | TGTACA | 1 cut(s) | 1578 |
| Bsp19I | CCATGG | 2 cut(s) | 641, 1383 |
| BspACI | CCGC | 9 cut(s) | 57, 66, 93, 100, 259, 270, 302, 760, 933 |
| BspANI | GGCC | 4 cut(s) | 562, 567, 1055, 1871 |
| BspCNI | CTCAG | 5 cut(s) | 364, 622, 1897, 1990, 2023 |
| BspHI | TCATGA | 2 cut(s) | 1036, 1375 |
| BspLI | GGNNCC | 5 cut(s) | 369, 654, 931, 1146, 2060 |
| BspMAI | CTGCAG | 3 cut(s) | 117, 982, 1755 |
| BspMI | ACCTGC | 2 cut(s) | 210, 1744 |
| BspPI | GGATC | 5 cut(s) | 476, 632, 1087, 1139, 1152 |
| BspQI | GCTCTTC | 1 cut(s) | 2122 |
| BspT107I | GGYRCC | 1 cut(s) | 367 |
| BspTI | CTTAAG | 1 cut(s) | 1493 |
| BspTNI | GGTCTC | 2 cut(s) | 63, 140 |
| BsrDI | GCAATG | 2 cut(s) | 1305, 1404 |
| BsrFI | RCCGGY | 1 cut(s) | 423 |
| BsrGI | TGTACA | 1 cut(s) | 1578 |
| BsrI | ACTGG | 1 cut(s) | 727 |
| BssAI | RCCGGY | 1 cut(s) | 423 |
| BssECI | CCNNGG | 6 cut(s) | 73, 568, 641, 1056, 1383, 1806 |
| BssNAI | GTATAC | 1 cut(s) | 1209 |
| BssNI | GRCGYC | 2 cut(s) | 228, 2182 |
| BssSI | CACGAG | 1 cut(s) | 1272 |
| BssT1I | CCWWGG | 3 cut(s) | 568, 641, 1383 |
| Bst1107I | GTATAC | 1 cut(s) | 1209 |
| Bst2BI | CACGAG | 1 cut(s) | 1272 |
| Bst2UI | CCWGG | 3 cut(s) | 564, 615, 786 |
| Bst4CI | ACNGT | 7 cut(s) | 533, 1167, 1429, 1583, 1834, 1890, 1942 |
| Bst6I | CTCTTC | 5 cut(s) | 945, 1665, 1679, 2038, 2122 |
| BstACI | GRCGYC | 2 cut(s) | 228, 2182 |
| BstAFI | CTTAAG | 1 cut(s) | 1493 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 914 |
| BstAUI | TGTACA | 1 cut(s) | 1578 |
| BstBAI | YACGTR | 1 cut(s) | 2195 |
| BstC8I | GCNNGC | 4 cut(s) | 425, 1455, 1794, 2022 |
| BstDEI | CTNAG | 6 cut(s) | 372, 609, 1112, 1905, 1998, 2031 |
| BstDSI | CCRYGG | 3 cut(s) | 641, 1056, 1383 |
| BstF5I | GGATG | 7 cut(s) | 382, 718, 1581, 1739, 1960, 2112, 2161 |
| BstHHI | GCGC | 2 cut(s) | 46, 423 |
| BstMAI | GTCTC | 3 cut(s) | 63, 140, 1780 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 63, 236, 816, 914, 1199, 1637, 2003 |
| BstNI | CCWGG | 3 cut(s) | 564, 615, 786 |
| BstSCI | CCNGG | 7 cut(s) | 73, 337, 464, 562, 613, 784, 1805 |
| BstSFI | CTRYAG | 6 cut(s) | 31, 113, 474, 978, 1197, 1751 |
| BstSLI | GKGCMC | 2 cut(s) | 339, 436 |
| BstSNI | TACGTA | 1 cut(s) | 2195 |
| BstV2I | GAAGAC | 4 cut(s) | 225, 332, 411, 1193 |
| BstX2I | RGATCY | 2 cut(s) | 1079, 1144 |
| BstYI | RGATCY | 2 cut(s) | 1079, 1144 |
| BstZ17I | GTATAC | 1 cut(s) | 1209 |
| Bsu36I | CCTNAGG | 1 cut(s) | 372 |
| BsuRI | GGCC | 4 cut(s) | 562, 567, 1055, 1871 |
| BtgI | CCRYGG | 3 cut(s) | 641, 1056, 1383 |
| BtsCI | GGATG | 7 cut(s) | 382, 718, 1581, 1739, 1960, 2112, 2161 |
| BtsIMutI | CAGTG | 2 cut(s) | 1257, 1830 |
| BveI | ACCTGC | 2 cut(s) | 210, 1744 |
| Cac8I | GCNNGC | 4 cut(s) | 425, 1455, 1794, 2022 |
| CaiI | CAGNNNCTG | 4 cut(s) | 866, 986, 1235, 1736 |
| CciI | TCATGA | 2 cut(s) | 1036, 1375 |
| CfoI | GCGC | 2 cut(s) | 46, 423 |
| Cfr10I | RCCGGY | 1 cut(s) | 423 |
| Cfr13I | GGNCC | 3 cut(s) | 757, 929, 1870 |
| CseI | GACGC | 2 cut(s) | 236, 1614 |
| Csp6I | GTAC | 4 cut(s) | 551, 716, 1579, 1707 |
| CviAII | CATG | 8 cut(s) | 642, 805, 1037, 1376, 1384, 1622, 1783, 1895 |
| CviQI | GTAC | 4 cut(s) | 551, 716, 1579, 1707 |
| DdeI | CTNAG | 6 cut(s) | 372, 609, 1112, 1905, 1998, 2031 |
| EaeI | YGGCCR | 1 cut(s) | 560 |
| Eam1104I | CTCTTC | 5 cut(s) | 945, 1665, 1679, 2038, 2122 |
| EarI | CTCTTC | 5 cut(s) | 945, 1665, 1679, 2038, 2122 |
| Ecl136II | GAGCTC | 2 cut(s) | 2092, 2132 |
| Eco105I | TACGTA | 1 cut(s) | 2195 |
| Eco130I | CCWWGG | 3 cut(s) | 568, 641, 1383 |
| Eco147I | AGGCCT | 1 cut(s) | 567 |
| Eco24I | GRGCYC | 2 cut(s) | 2094, 2134 |
| Eco31I | GGTCTC | 2 cut(s) | 63, 140 |
| Eco32I | GATATC | 2 cut(s) | 1123, 1570 |
| Eco47I | GGWCC | 2 cut(s) | 757, 929 |
| Eco53kI | GAGCTC | 2 cut(s) | 2092, 2132 |
| Eco57I | CTGAAG | 3 cut(s) | 1197, 1233, 1703 |
| Eco81I | CCTNAGG | 1 cut(s) | 372 |
| Eco88I | CYCGRG | 1 cut(s) | 924 |
| EcoICRI | GAGCTC | 2 cut(s) | 2092, 2132 |
| EcoO109I | RGGNCCY | 2 cut(s) | 929, 1870 |
| EcoRI | GAATTC | 2 cut(s) | 128, 962 |
| EcoRII | CCWGG | 3 cut(s) | 562, 613, 784 |
| EcoRV | GATATC | 2 cut(s) | 1123, 1570 |
| EcoT14I | CCWWGG | 3 cut(s) | 568, 641, 1383 |
| EcoT38I | GRGCYC | 2 cut(s) | 2094, 2134 |
| ErhI | CCWWGG | 3 cut(s) | 568, 641, 1383 |
| FaeI | CATG | 8 cut(s) | 645, 808, 1040, 1379, 1387, 1625, 1786, 1898 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1974, 2006 |
| FaqI | GGGAC | 4 cut(s) | 26, 569, 615, 915 |
| FatI | CATG | 8 cut(s) | 641, 804, 1036, 1375, 1383, 1621, 1782, 1894 |
| FauI | CCCGC | 4 cut(s) | 107, 277, 295, 940 |
| FauNDI | CATATG | 1 cut(s) | 1004 |
| FbaI | TGATCA | 2 cut(s) | 676, 1254 |
| FblI | GTMKAC | 2 cut(s) | 210, 1208 |
| FokI | GGATG | 7 cut(s) | 389, 725, 1588, 1726, 1967, 2119, 2168 |
| FriOI | GRGCYC | 2 cut(s) | 2094, 2134 |
| FspBI | CTAG | 3 cut(s) | 1083, 1440, 1539 |
| GlaI | GCGC | 2 cut(s) | 45, 422 |
| GsaI | CCCAGC | 2 cut(s) | 413, 1635 |
| GsuI | CTGGAG | 2 cut(s) | 636, 744 |
| HaeIII | GGCC | 4 cut(s) | 562, 567, 1055, 1871 |
| HapII | CCGG | 5 cut(s) | 75, 339, 424, 465, 1806 |
| HgaI | GACGC | 2 cut(s) | 236, 1614 |
| HhaI | GCGC | 2 cut(s) | 46, 423 |
| Hin1I | GRCGYC | 2 cut(s) | 228, 2182 |
| Hin1II | CATG | 8 cut(s) | 645, 808, 1040, 1379, 1387, 1625, 1786, 1898 |
| Hin6I | GCGC | 2 cut(s) | 44, 421 |
| HinP1I | GCGC | 2 cut(s) | 44, 421 |
| HincII | GTYRAC | 1 cut(s) | 211 |
| HindII | GTYRAC | 1 cut(s) | 211 |
| HindIII | AAGCTT | 2 cut(s) | 139, 828 |
| HinfI | GANTC | 2 cut(s) | 1531, 2114 |
| HpaII | CCGG | 5 cut(s) | 75, 339, 424, 465, 1806 |
| HphI | GGTGA | 3 cut(s) | 1130, 1658, 1709 |
| Hpy166II | GTNNAC | 4 cut(s) | 211, 757, 1209, 1947 |
| Hpy188I | TCNGA | 8 cut(s) | 384, 735, 774, 887, 1357, 1732, 1775, 2071 |
| Hpy8I | GTNNAC | 4 cut(s) | 211, 757, 1209, 1947 |
| Hpy99I | CGWCG | 1 cut(s) | 230 |
| HpyAV | CCTTC | 5 cut(s) | 11, 241, 341, 1045, 1283 |
| HpyCH4III | ACNGT | 7 cut(s) | 533, 1167, 1429, 1583, 1834, 1890, 1942 |
| HpyCH4IV | ACGT | 4 cut(s) | 1044, 1480, 2182, 2194 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 63, 236, 816, 914, 1199, 1637, 2003 |
| HpyF3I | CTNAG | 6 cut(s) | 372, 609, 1112, 1905, 1998, 2031 |
| HpySE526I | ACGT | 4 cut(s) | 1044, 1480, 2182, 2194 |
| Hsp92I | GRCGYC | 2 cut(s) | 228, 2182 |
| Hsp92II | CATG | 8 cut(s) | 645, 808, 1040, 1379, 1387, 1625, 1786, 1898 |
| HspAI | GCGC | 2 cut(s) | 44, 421 |
| KroI | GCCGGC | 1 cut(s) | 423 |
| KroNI | GCCGGC | 1 cut(s) | 425 |
| Ksp22I | TGATCA | 2 cut(s) | 676, 1254 |
| LguI | GCTCTTC | 1 cut(s) | 2122 |
| LmnI | GCTCC | 7 cut(s) | 20, 261, 857, 1024, 1198, 1295, 1387 |
| LweI | GCATC | 5 cut(s) | 226, 828, 904, 1748, 1945 |
| MaeI | CTAG | 3 cut(s) | 1083, 1440, 1539 |
| MaeII | ACGT | 4 cut(s) | 1044, 1480, 2182, 2194 |
| MaeIII | GTNAC | 3 cut(s) | 596, 1646, 1715 |
| MfeI | CAATTG | 3 cut(s) | 353, 579, 777 |
| MflI | RGATCY | 2 cut(s) | 1079, 1144 |
| MhlI | GDGCHC | 4 cut(s) | 339, 436, 2094, 2134 |
| MroNI | GCCGGC | 1 cut(s) | 423 |
| MseI | TTAA | 7 cut(s) | 689, 797, 1434, 1494, 1563, 1917, 2016 |
| MslI | CAYNNNNRTG | 2 cut(s) | 887, 2099 |
| MspA1I | CMGCKG | 6 cut(s) | 66, 272, 302, 1232, 1460, 1843 |
| MspCI | CTTAAG | 1 cut(s) | 1493 |
| MspI | CCGG | 5 cut(s) | 75, 339, 424, 465, 1806 |
| MspR9I | CCNGG | 7 cut(s) | 75, 339, 466, 564, 615, 786, 1807 |
| MunI | CAATTG | 3 cut(s) | 353, 579, 777 |
| MvaI | CCWGG | 3 cut(s) | 564, 615, 786 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 63, 236, 816, 914, 1199, 1637, 2003 |
| NaeI | GCCGGC | 1 cut(s) | 425 |
| NciI | CCSGG | 4 cut(s) | 75, 339, 466, 1807 |
| NcoI | CCATGG | 2 cut(s) | 641, 1383 |
| NdeI | CATATG | 1 cut(s) | 1004 |
| NgoMIV | GCCGGC | 1 cut(s) | 423 |
| NlaIII | CATG | 8 cut(s) | 645, 808, 1040, 1379, 1387, 1625, 1786, 1898 |
| NlaIV | GGNNCC | 5 cut(s) | 369, 654, 931, 1146, 2060 |
| NmeAIII | GCCGAG | 2 cut(s) | 33, 86 |
| NmuCI | GTSAC | 2 cut(s) | 1646, 1715 |
| PaeR7I | CTCGAG | 1 cut(s) | 924 |
| PagI | TCATGA | 2 cut(s) | 1036, 1375 |
| PceI | AGGCCT | 1 cut(s) | 567 |
| PciSI | GCTCTTC | 1 cut(s) | 2122 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 231 |
| PdiI | GCCGGC | 1 cut(s) | 425 |
| PfeI | GAWTC | 2 cut(s) | 1531, 2114 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 569 |
| Ppu21I | YACGTR | 1 cut(s) | 2195 |
| PpuMI | RGGWCCY | 1 cut(s) | 929 |
| PsiI | TTATAA | 1 cut(s) | 2138 |
| Psp124BI | GAGCTC | 2 cut(s) | 2094, 2134 |
| Psp5II | RGGWCCY | 1 cut(s) | 929 |
| Psp6I | CCWGG | 3 cut(s) | 562, 613, 784 |
| PspFI | CCCAGC | 2 cut(s) | 409, 1631 |
| PspGI | CCWGG | 3 cut(s) | 562, 613, 784 |
| PspN4I | GGNNCC | 5 cut(s) | 369, 654, 931, 1146, 2060 |
| PspPI | GGNCC | 3 cut(s) | 757, 929, 1870 |
| PspPPI | RGGWCCY | 1 cut(s) | 929 |
| PstI | CTGCAG | 3 cut(s) | 117, 982, 1755 |
| PstNI | CAGNNNCTG | 4 cut(s) | 866, 986, 1235, 1736 |
| PsuI | RGATCY | 2 cut(s) | 1079, 1144 |
| PvuII | CAGCTG | 3 cut(s) | 1232, 1460, 1843 |
| RsaI | GTAC | 4 cut(s) | 552, 717, 1580, 1708 |
| RsaNI | GTAC | 4 cut(s) | 551, 716, 1579, 1707 |
| RseI | CAYNNNNRTG | 2 cut(s) | 887, 2099 |
| SacI | GAGCTC | 2 cut(s) | 2094, 2134 |
| SalI | GTCGAC | 1 cut(s) | 209 |
| SapI | GCTCTTC | 1 cut(s) | 2122 |
| SaqAI | TTAA | 7 cut(s) | 689, 797, 1434, 1494, 1563, 1917, 2016 |
| Sau96I | GGNCC | 3 cut(s) | 757, 929, 1870 |
| ScrFI | CCNGG | 7 cut(s) | 75, 339, 466, 564, 615, 786, 1807 |
| SduI | GDGCHC | 4 cut(s) | 339, 436, 2094, 2134 |
| SfaNI | GCATC | 5 cut(s) | 226, 828, 904, 1748, 1945 |
| SfcI | CTRYAG | 6 cut(s) | 31, 113, 474, 978, 1197, 1751 |
| Sfr274I | CTCGAG | 1 cut(s) | 924 |
| SinI | GGWCC | 2 cut(s) | 757, 929 |
| SlaI | CTCGAG | 1 cut(s) | 924 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 887, 2099 |
| SmlI | CTYRAG | 3 cut(s) | 924, 1172, 1493 |
| SmoI | CTYRAG | 3 cut(s) | 924, 1172, 1493 |
| SnaBI | TACGTA | 1 cut(s) | 2195 |
| SseBI | AGGCCT | 1 cut(s) | 567 |
| SsiI | CCGC | 9 cut(s) | 57, 66, 93, 100, 259, 270, 302, 760, 933 |
| SspI | AATATT | 1 cut(s) | 1700 |
| SspMI | CTAG | 3 cut(s) | 1083, 1440, 1539 |
| SstI | GAGCTC | 2 cut(s) | 2094, 2134 |
| StuI | AGGCCT | 1 cut(s) | 567 |
| StyD4I | CCNGG | 7 cut(s) | 73, 337, 464, 562, 613, 784, 1805 |
| StyI | CCWWGG | 3 cut(s) | 568, 641, 1383 |
| TaaI | ACNGT | 7 cut(s) | 533, 1167, 1429, 1583, 1834, 1890, 1942 |
| TaiI | ACGT | 4 cut(s) | 1047, 1483, 2185, 2197 |
| TaqI | TCGA | 7 cut(s) | 144, 210, 225, 234, 446, 925, 1182 |
| TatI | WGTACW | 1 cut(s) | 1578 |
| TauI | GCSGC | 2 cut(s) | 60, 95 |
| TfiI | GAWTC | 2 cut(s) | 1531, 2114 |
| Tru1I | TTAA | 7 cut(s) | 689, 797, 1434, 1494, 1563, 1917, 2016 |
| Tru9I | TTAA | 7 cut(s) | 689, 797, 1434, 1494, 1563, 1917, 2016 |
| TscAI | CASTG | 2 cut(s) | 1257, 1837 |
| TseFI | GTSAC | 2 cut(s) | 1646, 1715 |
| Tsp45I | GTSAC | 2 cut(s) | 1646, 1715 |
| TspRI | CASTG | 2 cut(s) | 1257, 1837 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 569 |
| Vha464I | CTTAAG | 1 cut(s) | 1493 |
| VpaK11BI | GGWCC | 2 cut(s) | 757, 929 |
| XapI | RAATTY | 5 cut(s) | 119, 128, 319, 962, 1090 |
| XbaI | TCTAGA | 3 cut(s) | 1082, 1439, 1538 |
| XhoI | CTCGAG | 1 cut(s) | 924 |
| XmiI | GTMKAC | 2 cut(s) | 210, 1208 |
| XspI | CTAG | 3 cut(s) | 1083, 1440, 1539 |
| ZraI | GACGTC | 1 cut(s) | 2183 |