Rorug01G0467200

Belongs to the helicase family. Dicer subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0004795
Physical Location & Seq
Reverse (-)
55999150 .. 56001946
2797 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0467200.1

Sequence Viewer

Length: 2055 bp
ATGGCTAACCCTGAAATAGCTTTAAATGTAGAGCACACGGAAGAAGAGAAATCTCAGAGGTCAGTTACTGATGGAGGAGATACAAGAACAACTGGAGGGGACTCCGATTCGATCCACCCCCCCGGCTGGTTCTCCTTTAACAAAATTTTCAATCTAAAAGGGAAGTTCCTTCCGATGTGGAACAACATATTTGTAGCATCTTGTGTGTTTGCTGTCTCCTTTGATCCTTTGTTCTTCTACACTCCAGTCATTGACGAACAGCAGAAGTCTGTATATTTTGACAGAAGGTTGAAGGCCATAGCCCTTGTCTTAAGGTTACTCACAGATCTCTTCTACATTGGGGACATTATTATGCGAATTTTGATTAGTATACCTCAAACCAAGTCATCCAAGGCTTCTGAGGTGACGAAAACACAAGCCGAAGCTCATAATTCCAAAGGGAAAATATCAGTTGAGGATGTTTTCAAAATAGCTAAAAGGGCTTGGGCGAAAGCTAATAGATCATACATCCTCATTGACATTTTAGCTATTCTTCCCATACCCCAGGTGGGAATGTTCGTTTTCTTTTCGAAGATGAAGGGTCCGGGATGTTCGATAGAATGGAGGCTTTTCGACATTCTTATTTTGTTCCAATTTGTCCCACGCGTTCTTCCCGTTTACTTATTGTGCAGAGAACGTCAGAAAACTCTTAATAAAGCAAGCATGTGGACTAAAGGTGTTTTCAATTTCTTTCTATACATCCTCGCAAGTCATGTAGTCGGAGCTCTTTGGTACTTTTTTGCCATTCAACGAGCGATGGATTGTTGGCATTATGTTTACCAAGGTCATAAGGAATGTCAACCTAGTACCTTTTGTTGTAGTGAACGACGAAATTGTCAACCTAGTACCTTTTGTTGTAGTGAACGACGAAATAGTTCTCAAACTATCCCATCGTTTGACAAAGAATGTCCGATAAGCCTACTGGACGAAGGGAAAGAAAAGCTCTTTGATTTTGGTATATTTGCTGATGCGCTTGACCCCCGCCTAGTGCAGTCGACTGATTTTCCTCAAAAATTATTGAACTGTTTCTGGTGGGGGCTGAGAAATCTGAGCTCTCTTGGTCAAAACCTCGAAACAAGTACCTATGCATGGGAAAACCTCTTTGCTGTGTTTATTTGCATTATAGGCTTGCTATTGTTTATATATCTCATCGGAAATTTGCAGGCATATTTGCAGTTCGCAACTGCAAGATCAGAGAAGATTAGACGGAAAATGAAAACGAAAAATTTAGAGGTTGATTTGTGGCTATCTAGAAAGGGACTGCCTAGCAATTTGAAGGAAGTGATAATGCAATTCCTACAAAAAAAACTTGAACAGAACAATGATGTTCAAGTTGAGAACATCCTCTCTGTTCTTCCCCCAGCACATAGTAAATATATCAAGCGGTATCTTCGGTTGGCTACACTCAACAAAGTGCCAATGCTTCAAACTATGGGGGTAAGACTGCTGAAAGCAATCTGTCAGCACCTCGAGCCGGTGGACTATCCTGAGGACAGTTGCATTATTCAAGAGGGAGAGCGACTCCATAAGATGTTTTTCATCACACATGGCACTATACAGACCTACAAGACCAATGGTAAAGGTGGAAAATTTGGCTCCGAGTTTCTTGAGAAAGGGGACTTCTATGGATCAGAAGAGCTTCTCAATTGGGTATCAAAGTTTAGCTCTTCCAACGACTTACCAATCTCGACCAGAATGGTTAAGCCTGTCACGAAAGTCGAAGTCTTTGAGCTGAGCGCGGACGACTTGAAGAGTGTAGCCATCAAGTACTGGTGGAATTTCACCAAGAACAAGGATCCAAAGGATTTCGACCAGTCTCTGTTGGAGGAGTTTGCAGTATCTTCCATAGAAAAAGAAATCCGTCGCCGCAGGCAACCGAAAAAGAAGCCTACAATACGTTCTCTCCTTAAATTGGCTACTAATCAGGGTAGTGCTAGCCAGAAGTTCCAAGAGGTCATCAGTAGGGTCATGATGGATCGGCTACCTGCACCCGTTTGTGCTCTAGATGGCAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0002252 GO:0002376 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004525 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006259 GO:0006351 GO:0006353 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009605 GO:0009607 GO:0009615 GO:0009616 GO:0009791 GO:0009798 GO:0009888 GO:0009892 GO:0009943 GO:0009944 GO:0009955 GO:0009987 GO:0010033 GO:0010050 GO:0010073 GO:0010074 GO:0010216 GO:0010267 GO:0010467 GO:0010468 GO:0010492 GO:0010599 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016246 GO:0016441 GO:0016442 GO:0016458 GO:0016787 GO:0016788 GO:0016891 GO:0016893 GO:0018130 GO:0019222 GO:0019438 GO:0019827 GO:0022414 GO:0030422 GO:0031047 GO:0031050 GO:0031332 GO:0032296 GO:0032501 GO:0032502 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0035194 GO:0035821 GO:0040029 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043331 GO:0044003 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044403 GO:0044419 GO:0044424 GO:0044464 GO:0045087 GO:0046483 GO:0048507 GO:0048519 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050896 GO:0051214 GO:0051607 GO:0051701 GO:0051704 GO:0051707 GO:0051716 GO:0051817 GO:0052018 GO:0052249 GO:0060255 GO:0061458 GO:0065001 GO:0065007 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0097659 GO:0098542 GO:0098586 GO:0098727 GO:0140098 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901698 GO:1901699 GO:1990904
KEGG Pathways
Metabolic & Signaling
ko05206 map05206
Pfam Domains
Protein Families
DEAD DND1_DSRM Dicer_dimer Helicase_C PAZ ResIII Ribonuclease_3 dsrm

Protein Analysis

684

Amino Acids

78.72

Weight (kDa)

9.17

Isoelectric Point (pI)

49.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ion_trans PF00520 60 - 411 3.6e-09 Ion transport protein
cNMP_binding PF00027 506 - 599 1.1e-07 Cyclic nucleotide-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 873
Acc36I ACCTGC 2 cut(s) 2032, 2040
AccI GTMKAC 2 cut(s) 370, 1034
AccII CGCG 2 cut(s) 645, 1778
AciI CCGC 4 cut(s) 1021, 1423, 1778, 1906
AclWI GGATC 6 cut(s) 106, 218, 1675, 1829, 1842, 2022
AcsI RAATTY 6 cut(s) 144, 357, 1195, 1264, 1628, 1816
AfaI GTAC 5 cut(s) 773, 847, 886, 1120, 1808
AfiI CCNNNNNNNGG 5 cut(s) 126, 548, 1128, 1513, 1951
AflII CTTAAG 1 cut(s) 310
AflIII ACRYGT 1 cut(s) 643
AjnI CCWGG 1 cut(s) 543
Alw21I GWGCWC 4 cut(s) 36, 766, 1094, 2041
Alw26I GTCTC 2 cut(s) 220, 1860
AlwI GGATC 6 cut(s) 106, 218, 1675, 1829, 1842, 2022
AlwNI CAGNNNCTG 2 cut(s) 68, 1858
Ama87I CYCGRG 1 cut(s) 1508
AoxI GGCC 1 cut(s) 294
ApoI RAATTY 6 cut(s) 144, 357, 1195, 1264, 1628, 1816
Asp700I GAANNNNTTC 3 cut(s) 913, 1064, 1677
AspLEI GCGC 2 cut(s) 1012, 1778
AspS9I GGNCC 1 cut(s) 581
AsuC2I CCSGG 2 cut(s) 123, 585
AsuHPI GGTGA 2 cut(s) 415, 1813
AsuII TTCGAA 1 cut(s) 569
AsuNHI GCTAGC 1 cut(s) 1973
AvaI CYCGRG 1 cut(s) 1508
AvaII GGWCC 1 cut(s) 581
AxyI CCTNAGG 1 cut(s) 1527
BamHI GGATCC 1 cut(s) 1834
BanII GRGCYC 2 cut(s) 766, 1094
Bbv12I GWGCWC 4 cut(s) 36, 766, 1094, 2041
BccI CCATC 6 cut(s) 65, 790, 937, 1808, 2005, 2039
BciT130I CCWGG 1 cut(s) 545
BcnI CCSGG 2 cut(s) 123, 585
BcoDI GTCTC 2 cut(s) 220, 1860
BfaI CTAG 7 cut(s) 843, 882, 1025, 1290, 1305, 1974, 2042
BfrI CTTAAG 1 cut(s) 310
BfuAI ACCTGC 2 cut(s) 2032, 2040
BglII AGATCT 1 cut(s) 325
BisI GCNGC 1 cut(s) 1906
BlpI GCTNAGC 1 cut(s) 1772
BlsI GCNGC 1 cut(s) 1907
BmcAI AGTACT 1 cut(s) 1808
Bme1390I CCNGG 3 cut(s) 123, 545, 585
Bme18I GGWCC 1 cut(s) 581
BmeT110I CYCGRG 1 cut(s) 1508
BmgT120I GGNCC 1 cut(s) 581
BmiI GGNNCC 3 cut(s) 582, 1636, 1836
BmrFI CCNGG 3 cut(s) 123, 545, 585
BmsI GCATC 2 cut(s) 206, 997
BmtI GCTAGC 1 cut(s) 1977
BplI GAGNNNNNCTC 2 cut(s) 1545, 1577
BpmI CTGGAG 2 cut(s) 114, 228
Bpu1102I GCTNAGC 1 cut(s) 1772
Bpu14I TTCGAA 1 cut(s) 569
BpuEI CTTGAG 1 cut(s) 1667
BpuMI CCSGG 2 cut(s) 123, 585
BsaJI CCNNGG 4 cut(s) 121, 390, 543, 820
BsaXI ACNNNNNCTCC 2 cut(s) 1926, 1956
Bsc4I CCNNNNNNNGG 5 cut(s) 126, 548, 1128, 1513, 1951
Bse118I RCCGGY 1 cut(s) 1513
Bse1I ACTGG 5 cut(s) 97, 245, 966, 1814, 1852
Bse21I CCTNAGG 1 cut(s) 1527
BseBI CCWGG 1 cut(s) 545
BseDI CCNNGG 4 cut(s) 121, 390, 543, 820
BseGI GGATG 6 cut(s) 386, 463, 507, 593, 738, 1380
BseLI CCNNNNNNNGG 5 cut(s) 126, 548, 1128, 1513, 1951
BseMII CTCAG 6 cut(s) 68, 390, 1070, 1079, 1518, 1763
BseNI ACTGG 5 cut(s) 97, 245, 966, 1814, 1852
BseRI GAGGAG 2 cut(s) 90, 1880
BseYI CCCAGC 1 cut(s) 1399
BsgI GTGCAG 3 cut(s) 688, 1049, 2010
Bsh1236I CGCG 2 cut(s) 645, 1778
BshFI GGCC 1 cut(s) 296
BsiHKAI GWGCWC 4 cut(s) 36, 766, 1094, 2041
BsiHKCI CYCGRG 1 cut(s) 1508
BsiSI CCGG 3 cut(s) 123, 584, 1514
BslFI GGGAC 5 cut(s) 113, 356, 623, 1311, 1670
BslI CCNNNNNNNGG 5 cut(s) 126, 548, 1128, 1513, 1951
BsmAI GTCTC 2 cut(s) 220, 1860
BsmFI GGGAC 5 cut(s) 113, 356, 623, 1311, 1670
BsnI GGCC 1 cut(s) 296
BsoBI CYCGRG 1 cut(s) 1508
Bsp119I TTCGAA 1 cut(s) 569
Bsp1286I GDGCHC 4 cut(s) 36, 766, 1094, 2041
Bsp143I GATC 8 cut(s) 111, 223, 325, 500, 1229, 1667, 1834, 2014
Bsp1720I GCTNAGC 1 cut(s) 1772
BspACI CCGC 4 cut(s) 1021, 1423, 1778, 1906
BspANI GGCC 1 cut(s) 296
BspCNI CTCAG 6 cut(s) 67, 391, 1071, 1080, 1519, 1764
BspFNI CGCG 2 cut(s) 645, 1778
BspHI TCATGA 1 cut(s) 2007
BspLI GGNNCC 3 cut(s) 582, 1636, 1836
BspMI ACCTGC 2 cut(s) 2032, 2040
BspOI GCTAGC 1 cut(s) 1977
BspPI GGATC 6 cut(s) 106, 218, 1675, 1829, 1842, 2022
BspQI GCTCTTC 2 cut(s) 1668, 1711
BspT104I TTCGAA 1 cut(s) 569
BspTI CTTAAG 1 cut(s) 310
BsrFI RCCGGY 1 cut(s) 1513
BsrI ACTGG 5 cut(s) 97, 245, 966, 1814, 1852
BssAI RCCGGY 1 cut(s) 1513
BssECI CCNNGG 4 cut(s) 121, 390, 543, 820
BssMI GATC 8 cut(s) 111, 223, 325, 500, 1229, 1667, 1834, 2014
BssNAI GTATAC 1 cut(s) 371
BssT1I CCWWGG 2 cut(s) 390, 820
Bst1107I GTATAC 1 cut(s) 371
Bst2UI CCWGG 1 cut(s) 545
Bst4CI ACNGT 2 cut(s) 1064, 1535
Bst6I CTCTTC 5 cut(s) 39, 335, 1668, 1711, 1784
BstAFI CTTAAG 1 cut(s) 310
BstBI TTCGAA 1 cut(s) 569
BstC8I GCNNGC 5 cut(s) 700, 1169, 1203, 1910, 1975
BstDEI CTNAG 6 cut(s) 54, 399, 1079, 1088, 1527, 1772
BstF5I GGATG 6 cut(s) 386, 463, 507, 593, 738, 1380
BstFNI CGCG 2 cut(s) 645, 1778
BstHHI GCGC 2 cut(s) 1012, 1778
BstKTI GATC 8 cut(s) 114, 226, 328, 503, 1232, 1670, 1837, 2017
BstMAI GTCTC 2 cut(s) 220, 1860
BstMBI GATC 8 cut(s) 111, 223, 325, 500, 1229, 1667, 1834, 2014
BstMWI GCNNNNNNNGC 3 cut(s) 479, 1164, 1510
BstNI CCWGG 1 cut(s) 545
BstNSI RCATGY 1 cut(s) 706
BstSCI CCNGG 3 cut(s) 121, 543, 583
BstUI CGCG 2 cut(s) 645, 1778
BstX2I RGATCY 2 cut(s) 325, 1834
BstYI RGATCY 2 cut(s) 325, 1834
BstZ17I GTATAC 1 cut(s) 371
Bsu36I CCTNAGG 1 cut(s) 1527
BsuRI GGCC 1 cut(s) 296
BtgZI GCGATG 1 cut(s) 809
BtsCI GGATG 6 cut(s) 386, 463, 507, 593, 738, 1380
BveI ACCTGC 2 cut(s) 2032, 2040
Cac8I GCNNGC 5 cut(s) 700, 1169, 1203, 1910, 1975
CaiI CAGNNNCTG 2 cut(s) 68, 1858
CciI TCATGA 1 cut(s) 2007
CfoI GCGC 2 cut(s) 1012, 1778
Cfr10I RCCGGY 1 cut(s) 1513
Cfr13I GGNCC 1 cut(s) 581
Csp6I GTAC 5 cut(s) 772, 846, 885, 1119, 1807
CviAII CATG 5 cut(s) 703, 752, 1128, 1586, 2008
CviQI GTAC 5 cut(s) 772, 846, 885, 1119, 1807
DdeI CTNAG 6 cut(s) 54, 399, 1079, 1088, 1527, 1772
DpnI GATC 8 cut(s) 113, 225, 327, 502, 1231, 1669, 1836, 2016
DpnII GATC 8 cut(s) 111, 223, 325, 500, 1229, 1667, 1834, 2014
DraI TTTAAA 1 cut(s) 24
DrdI GACNNNNNNGTC 1 cut(s) 873
DseDI GACNNNNNNGTC 1 cut(s) 873
Eam1104I CTCTTC 5 cut(s) 39, 335, 1668, 1711, 1784
EarI CTCTTC 5 cut(s) 39, 335, 1668, 1711, 1784
Ecl136II GAGCTC 2 cut(s) 764, 1092
Eco130I CCWWGG 2 cut(s) 390, 820
Eco24I GRGCYC 2 cut(s) 766, 1094
Eco47I GGWCC 1 cut(s) 581
Eco53kI GAGCTC 2 cut(s) 764, 1092
Eco81I CCTNAGG 1 cut(s) 1527
Eco88I CYCGRG 1 cut(s) 1508
EcoICRI GAGCTC 2 cut(s) 764, 1092
EcoRII CCWGG 1 cut(s) 543
EcoT14I CCWWGG 2 cut(s) 390, 820
EcoT22I ATGCAT 1 cut(s) 1129
EcoT38I GRGCYC 2 cut(s) 766, 1094
ErhI CCWWGG 2 cut(s) 390, 820
FaeI CATG 5 cut(s) 706, 755, 1131, 1589, 2011
FaqI GGGAC 5 cut(s) 113, 356, 623, 1311, 1670
FatI CATG 5 cut(s) 702, 751, 1127, 1585, 2007
FauI CCCGC 1 cut(s) 1028
FblI GTMKAC 2 cut(s) 370, 1034
Fnu4HI GCNGC 1 cut(s) 1906
FokI GGATG 6 cut(s) 373, 470, 494, 600, 725, 1367
FriOI GRGCYC 2 cut(s) 766, 1094
Fsp4HI GCNGC 1 cut(s) 1906
FspBI CTAG 7 cut(s) 843, 882, 1025, 1290, 1305, 1974, 2042
GlaI GCGC 2 cut(s) 1011, 1777
GluI GCNGC 1 cut(s) 1906
GsaI CCCAGC 1 cut(s) 1403
GsuI CTGGAG 2 cut(s) 114, 228
HaeIII GGCC 1 cut(s) 296
HapII CCGG 3 cut(s) 123, 584, 1514
HhaI GCGC 2 cut(s) 1012, 1778
Hin1II CATG 5 cut(s) 706, 755, 1131, 1589, 2011
Hin6I GCGC 2 cut(s) 1010, 1776
HinP1I GCGC 2 cut(s) 1010, 1776
HincII GTYRAC 3 cut(s) 839, 878, 1035
HindII GTYRAC 3 cut(s) 839, 878, 1035
HinfI GANTC 3 cut(s) 101, 107, 1560
HpaII CCGG 3 cut(s) 123, 584, 1514
HphI GGTGA 2 cut(s) 415, 1813
Hpy188III TCNNGA 8 cut(s) 1290, 1526, 1547, 1646, 1726, 1750, 2008, 2042
Hpy99I CGWCG 3 cut(s) 870, 909, 1905
HpyAV CCTTC 6 cut(s) 179, 279, 286, 571, 962, 1309
HpyCH4III ACNGT 2 cut(s) 1064, 1535
HpyCH4IV ACGT 2 cut(s) 676, 1936
HpyF10VI GCNNNNNNNGC 3 cut(s) 479, 1164, 1510
HpyF3I CTNAG 6 cut(s) 54, 399, 1079, 1088, 1527, 1772
HpySE526I ACGT 2 cut(s) 676, 1936
Hsp92II CATG 5 cut(s) 706, 755, 1131, 1589, 2011
HspAI GCGC 2 cut(s) 1010, 1776
Kzo9I GATC 8 cut(s) 111, 223, 325, 500, 1229, 1667, 1834, 2014
LguI GCTCTTC 2 cut(s) 1668, 1711
LmnI GCTCC 2 cut(s) 761, 1640
LweI GCATC 2 cut(s) 206, 997
MaeI CTAG 7 cut(s) 843, 882, 1025, 1290, 1305, 1974, 2042
MaeII ACGT 2 cut(s) 676, 1936
MaeIII GTNAC 4 cut(s) 64, 315, 403, 1747
MalI GATC 8 cut(s) 113, 225, 327, 502, 1231, 1669, 1836, 2016
MboI GATC 8 cut(s) 111, 223, 325, 500, 1229, 1667, 1834, 2014
MfeI CAATTG 1 cut(s) 1684
MflI RGATCY 2 cut(s) 325, 1834
MhlI GDGCHC 4 cut(s) 36, 766, 1094, 2041
MluI ACGCGT 1 cut(s) 643
MlyI GAGTC 2 cut(s) 95, 1554
MmeI TCCRAC 3 cut(s) 739, 1734, 1842
Mph1103I ATGCAT 1 cut(s) 1129
MroXI GAANNNNTTC 3 cut(s) 913, 1064, 1677
MseI TTAA 6 cut(s) 23, 138, 311, 690, 1740, 1947
MslI CAYNNNNRTG 1 cut(s) 350
MspCI CTTAAG 1 cut(s) 310
MspI CCGG 3 cut(s) 123, 584, 1514
MspR9I CCNGG 3 cut(s) 123, 545, 585
MunI CAATTG 1 cut(s) 1684
MvaI CCWGG 1 cut(s) 545
MvnI CGCG 2 cut(s) 645, 1778
MwoI GCNNNNNNNGC 3 cut(s) 479, 1164, 1510
NciI CCSGG 2 cut(s) 123, 585
NdeII GATC 8 cut(s) 111, 223, 325, 500, 1229, 1667, 1834, 2014
NheI GCTAGC 1 cut(s) 1973
NlaIII CATG 5 cut(s) 706, 755, 1131, 1589, 2011
NlaIV GGNNCC 3 cut(s) 582, 1636, 1836
NmuCI GTSAC 2 cut(s) 403, 1747
NsiI ATGCAT 1 cut(s) 1129
NspI RCATGY 1 cut(s) 706
NspV TTCGAA 1 cut(s) 569
PaeR7I CTCGAG 1 cut(s) 1508
PagI TCATGA 1 cut(s) 2007
PciSI GCTCTTC 2 cut(s) 1668, 1711
PdmI GAANNNNTTC 3 cut(s) 913, 1064, 1677
PfeI GAWTC 1 cut(s) 107
PfoI TCCNGGA 1 cut(s) 583
PkrI GCNGC 1 cut(s) 1907
PleI GAGTC 2 cut(s) 95, 1554
PpsI GAGTC 2 cut(s) 95, 1554
Psp124BI GAGCTC 2 cut(s) 766, 1094
Psp6I CCWGG 1 cut(s) 543
PspFI CCCAGC 1 cut(s) 1399
PspGI CCWGG 1 cut(s) 543
PspN4I GGNNCC 3 cut(s) 582, 1636, 1836
PspPI GGNCC 1 cut(s) 581
PspXI VCTCGAGB 1 cut(s) 1508
PstNI CAGNNNCTG 2 cut(s) 68, 1858
PsuI RGATCY 2 cut(s) 325, 1834
RsaI GTAC 5 cut(s) 773, 847, 886, 1120, 1808
RsaNI GTAC 5 cut(s) 772, 846, 885, 1119, 1807
RseI CAYNNNNRTG 1 cut(s) 350
SacI GAGCTC 2 cut(s) 766, 1094
SalI GTCGAC 1 cut(s) 1033
SapI GCTCTTC 2 cut(s) 1668, 1711
SaqAI TTAA 6 cut(s) 23, 138, 311, 690, 1740, 1947
SatI GCNGC 1 cut(s) 1906
Sau3AI GATC 8 cut(s) 111, 223, 325, 500, 1229, 1667, 1834, 2014
Sau96I GGNCC 1 cut(s) 581
ScaI AGTACT 1 cut(s) 1808
SchI GAGTC 2 cut(s) 95, 1554
ScrFI CCNGG 3 cut(s) 123, 545, 585
SduI GDGCHC 4 cut(s) 36, 766, 1094, 2041
SfaNI GCATC 2 cut(s) 206, 997
Sfr274I CTCGAG 1 cut(s) 1508
SfuI TTCGAA 1 cut(s) 569
SinI GGWCC 1 cut(s) 581
SlaI CTCGAG 1 cut(s) 1508
SmiMI CAYNNNNRTG 1 cut(s) 350
SmlI CTYRAG 3 cut(s) 310, 1508, 1646
SmoI CTYRAG 3 cut(s) 310, 1508, 1646
SsiI CCGC 4 cut(s) 1021, 1423, 1778, 1906
SspMI CTAG 7 cut(s) 843, 882, 1025, 1290, 1305, 1974, 2042
SstI GAGCTC 2 cut(s) 766, 1094
StyD4I CCNGG 3 cut(s) 121, 543, 583
StyI CCWWGG 2 cut(s) 390, 820
TaaI ACNGT 2 cut(s) 1064, 1535
TaiI ACGT 2 cut(s) 679, 1939
TatI WGTACW 1 cut(s) 1806
TauI GCSGC 1 cut(s) 1908
TfiI GAWTC 1 cut(s) 107
Tru1I TTAA 6 cut(s) 23, 138, 311, 690, 1740, 1947
Tru9I TTAA 6 cut(s) 23, 138, 311, 690, 1740, 1947
TseFI GTSAC 2 cut(s) 403, 1747
Tsp45I GTSAC 2 cut(s) 403, 1747
TspDTI ATGAA 3 cut(s) 590, 1268, 1567
TspGWI ACGGA 3 cut(s) 53, 1261, 1889
Vha464I CTTAAG 1 cut(s) 310
VpaK11BI GGWCC 1 cut(s) 581
XapI RAATTY 6 cut(s) 144, 357, 1195, 1264, 1628, 1816
XbaI TCTAGA 2 cut(s) 1289, 2041
XceI RCATGY 1 cut(s) 706
XcmI CCANNNNNNNNNTGG 1 cut(s) 544
XhoI CTCGAG 1 cut(s) 1508
XmiI GTMKAC 2 cut(s) 370, 1034
XmnI GAANNNNTTC 3 cut(s) 913, 1064, 1677
XspI CTAG 7 cut(s) 843, 882, 1025, 1290, 1305, 1974, 2042
ZrmI AGTACT 1 cut(s) 1808
Zsp2I ATGCAT 1 cut(s) 1129
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.