Prupe.8G131300_v2.0.a1

At4g06744-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0016747
Physical Location & Seq
Reverse (-)
15371899 .. 15373555
1657 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G131300.1

Sequence Viewer

Length: 1272 bp
ATGGGAAGCTTCTTTTTACTAATTAACCGTTTTCTTCATGCCTTGTTGATCATCATCCTTCCTTGTTTCTGCACCAGTGTAATTTGCACAAATTTTGAAAGTCCAGCACAATTATCTTCCTTACTCCCCCCATTACCTCCACTACCACTAATCCCCGCATTACCTCCAATTATCCCCGAGCTTTTGAACTTCACAGACCAAAGACTAGCTCTGGTGTACCCTATAATAAACGCCTTCAAGAACACCATCACTTCAGACCCTTTAGGCATCACTCAAACCTGGGTTGGCTCGGATATATGCACCTACAAAGGCTTCTACTGTGATCGCCCACCAGACAATCAAAGCGCCTTTGCTCTCGCCTCCATCGATTTCAATGGCTTCCAACTCAGTGCTCCCAGTATCGACGGCTTCATCGACCAACTTCCTGACCTTGCACTCTTCCATGCAAACTCGAACAACTTTTCAGGTATCATTTCTCCAAAGATTGCAAATCTCAAATATCTCTACGAGCTTGACATAAGCAACAACAACTTCTTTGGCCCTTTCCCCACGGCTGTTCTCACCATGAATAACCTATCATTTTTGGACATTCGTTTCAACTCTTTTACTGGGTCTGTACCACCACAAATTTTCAAGAAAACCCTAGACGTCCTCTTCATTAACAACAACAAATTCATACAAAAACTTCCAGACAACCTTGGAGCTACACCAGCCCGTTATCTCACTTTAGCCAACAACAAATTCACCGGGCCAATCCCAAAAAGCATTGGCAGCGCTTCATCAACTTTGATAGAAGCTCTACTCATGAATAATTTGATAACGGGTTGCATCCCTTATGAACTAGGGTTTCTAAAAGATGCAACACTGTTTGATGCTGGAAACAACCAATTGACCGGCCCGTTGCCGTGTTCATTGGGATGCTTGGAGAAGATTGAGCAGCTTAATTTCGCCGGAAACTTCCTCTATGGAAAGGTGCCTGAGGTGGTGTGTGAATTAGGGAACTTGGCCAATTTATCGTTGTCTAACAACTATTTTACGATGGTTGGGCCAATTTGTAGGAAGCTGATTAAAAGTGGGGTTCTTGACTTGAGGAAGAACTGCATTCGTGATCTTGCAGATCAAAGATCAGTGGAGGAATGTGCCTCGTTTTCGTCGCACCCTAGAAGTTGCCTGCATCCGGAGAGCTTTAGTTTCATGCCTTGTAAGGTTCCCCCAAAAGCGAAGGAACATTTGGATTCTTATGCTGCTCCTTCGCGGCATAGATTAATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

424

Amino Acids

46.6

Weight (kDa)

6.59

Isoelectric Point (pI)

33.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016747)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g05540
malus_domestica MD05G1086600.v1.1
prunus_persica Prupe.8G131300_v2.0.a1
pyrus_communis pycom05g08600
rosa_chinensis RchiOBHm_Chr6g0255851
rosa_laevigata RLG00000014811
rosa_multiflora Rmu_sc0001163.1_g000035
rosa_roxburghii Rroxscaffold_7G00209590
rosa_rugosa Rorug05G0561700
rosa_samantha Rh6AG080000 Rh6BG072900 Rh6CG070900 Rh6DG068200
rosa_wichuraiana Rw6G006900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 651
AccB1I GGYRCC 1 cut(s) 973
AccII CGCG 1 cut(s) 1255
AccIII TCCGGA 1 cut(s) 1177
AciI CCGC 2 cut(s) 156, 1255
AcoI YGGCCR 1 cut(s) 1005
AcsI RAATTY 4 cut(s) 91, 627, 671, 740
AcuI CTGAAG 1 cut(s) 237
AcyI GRCGYC 1 cut(s) 648
AfaI GTAC 2 cut(s) 218, 618
AfeI AGCGCT 1 cut(s) 775
AfiI CCNNNNNNNGG 1 cut(s) 1177
AgsI TTSAA 6 cut(s) 98, 187, 238, 373, 598, 634
AjnI CCWGG 1 cut(s) 278
AjuI GAANNNNNNNTTGG 4 cut(s) 725, 757, 1214, 1246
AluBI AGCT 9 cut(s) 9, 181, 209, 511, 704, 797, 940, 1063, 1185
AluI AGCT 9 cut(s) 9, 181, 209, 511, 704, 797, 940, 1063, 1185
Alw21I GWGCWC 1 cut(s) 394
Ama87I CYCGRG 1 cut(s) 176
Aor13HI TCCGGA 1 cut(s) 1177
Aor51HI AGCGCT 1 cut(s) 775
AoxI GGCC 5 cut(s) 538, 749, 895, 1005, 1046
ApeKI GCWGC 3 cut(s) 771, 937, 1244
ApoI RAATTY 4 cut(s) 91, 627, 671, 740
AseI ATTAAT 1 cut(s) 1265
AspLEI GCGC 2 cut(s) 347, 776
AspS9I GGNCC 4 cut(s) 539, 749, 896, 1046
AsuC2I CCSGG 1 cut(s) 748
AsuHPI GGTGA 2 cut(s) 553, 736
AvaI CYCGRG 1 cut(s) 176
AxyI CCTNAGG 1 cut(s) 978
BalI TGGCCA 1 cut(s) 1007
BanI GGYRCC 1 cut(s) 973
Bbv12I GWGCWC 1 cut(s) 394
BbvI GCAGC 3 cut(s) 783, 949, 1231
BccI CCATC 3 cut(s) 254, 371, 1033
BceAI ACGGC 3 cut(s) 421, 567, 889
BciT130I CCWGG 1 cut(s) 280
BclI TGATCA 1 cut(s) 48
BcnI CCSGG 1 cut(s) 748
BfaI CTAG 4 cut(s) 206, 644, 842, 1161
BfoI RGCGCY 2 cut(s) 348, 777
BisI GCNGC 4 cut(s) 772, 938, 1245, 1256
BlsI GCNGC 4 cut(s) 773, 939, 1246, 1257
Bme1390I CCNGG 2 cut(s) 280, 748
BmeT110I CYCGRG 1 cut(s) 176
BmgT120I GGNCC 4 cut(s) 539, 749, 896, 1046
BmiI GGNNCC 2 cut(s) 975, 1209
BmrFI CCNGG 2 cut(s) 280, 748
BmrI ACTGGG 2 cut(s) 390, 618
BmsI GCATC 6 cut(s) 276, 837, 847, 862, 908, 1183
BmuI ACTGGG 2 cut(s) 390, 618
BpuEI CTTGAG 1 cut(s) 1108
BpuMI CCSGG 1 cut(s) 748
Bsa29I ATCGAT 1 cut(s) 366
BsaBI GATNNNNATC 1 cut(s) 53
BsaHI GRCGYC 1 cut(s) 648
BsaJI CCNNGG 3 cut(s) 279, 549, 697
BsaWI WCCGGW 1 cut(s) 1177
Bsc4I CCNNNNNNNGG 1 cut(s) 1177
Bse118I RCCGGY 1 cut(s) 893
Bse1I ACTGG 3 cut(s) 75, 396, 613
Bse21I CCTNAGG 1 cut(s) 978
Bse8I GATNNNNATC 1 cut(s) 53
BseAI TCCGGA 1 cut(s) 1177
BseBI CCWGG 1 cut(s) 280
BseCI ATCGAT 1 cut(s) 366
BseDI CCNNGG 3 cut(s) 279, 549, 697
BseGI GGATG 4 cut(s) 54, 828, 923, 1174
BseJI GATNNNNATC 1 cut(s) 53
BseLI CCNNNNNNNGG 1 cut(s) 1177
BseMII CTCAG 2 cut(s) 400, 969
BseNI ACTGG 3 cut(s) 75, 396, 613
BseXI GCAGC 3 cut(s) 783, 949, 1231
BsgI GTGCAG 1 cut(s) 55
Bsh1236I CGCG 1 cut(s) 1255
BshFI GGCC 5 cut(s) 540, 751, 897, 1007, 1048
BshNI GGYRCC 1 cut(s) 973
BshVI ATCGAT 1 cut(s) 366
BsiHKAI GWGCWC 1 cut(s) 394
BsiHKCI CYCGRG 1 cut(s) 176
BsiSI CCGG 4 cut(s) 747, 894, 951, 1178
BslI CCNNNNNNNGG 1 cut(s) 1177
BsmI GAATGC 1 cut(s) 1101
BsnI GGCC 5 cut(s) 540, 751, 897, 1007, 1048
BsoBI CYCGRG 1 cut(s) 176
Bsp1286I GDGCHC 1 cut(s) 394
Bsp13I TCCGGA 1 cut(s) 1177
Bsp143I GATC 5 cut(s) 48, 322, 1108, 1117, 1124
BspACI CCGC 2 cut(s) 156, 1255
BspANI GGCC 5 cut(s) 540, 751, 897, 1007, 1048
BspCNI CTCAG 2 cut(s) 399, 970
BspDI ATCGAT 1 cut(s) 366
BspEI TCCGGA 1 cut(s) 1177
BspFNI CGCG 1 cut(s) 1255
BspHI TCATGA 1 cut(s) 804
BspLI GGNNCC 2 cut(s) 975, 1209
BspT107I GGYRCC 1 cut(s) 973
BsrFI RCCGGY 1 cut(s) 893
BsrI ACTGG 3 cut(s) 75, 396, 613
BssAI RCCGGY 1 cut(s) 893
BssECI CCNNGG 3 cut(s) 279, 549, 697
BssMI GATC 5 cut(s) 48, 322, 1108, 1117, 1124
BssNI GRCGYC 1 cut(s) 648
BssT1I CCWWGG 1 cut(s) 697
Bst2UI CCWGG 1 cut(s) 280
Bst4CI ACNGT 3 cut(s) 29, 320, 867
Bst6I CTCTTC 2 cut(s) 443, 659
BstACI GRCGYC 1 cut(s) 648
BstC8I GCNNGC 1 cut(s) 1172
BstDEI CTNAG 2 cut(s) 386, 978
BstDSI CCRYGG 1 cut(s) 549
BstF5I GGATG 4 cut(s) 54, 828, 923, 1174
BstFNI CGCG 1 cut(s) 1255
BstH2I RGCGCY 2 cut(s) 348, 777
BstHHI GCGC 2 cut(s) 347, 776
BstKTI GATC 5 cut(s) 51, 325, 1111, 1120, 1127
BstMBI GATC 5 cut(s) 48, 322, 1108, 1117, 1124
BstMWI GCNNNNNNNGC 2 cut(s) 710, 771
BstNI CCWGG 1 cut(s) 280
BstSCI CCNGG 2 cut(s) 278, 746
BstUI CGCG 1 cut(s) 1255
BstV1I GCAGC 3 cut(s) 783, 949, 1231
Bsu15I ATCGAT 1 cut(s) 366
Bsu36I CCTNAGG 1 cut(s) 978
BsuRI GGCC 5 cut(s) 540, 751, 897, 1007, 1048
BsuTUI ATCGAT 1 cut(s) 366
BtgI CCRYGG 1 cut(s) 549
BtsCI GGATG 4 cut(s) 54, 828, 923, 1174
BtsIMutI CAGTG 4 cut(s) 82, 394, 863, 1134
Cac8I GCNNGC 1 cut(s) 1172
CciI TCATGA 1 cut(s) 804
CfoI GCGC 2 cut(s) 347, 776
Cfr10I RCCGGY 1 cut(s) 893
Cfr13I GGNCC 4 cut(s) 539, 749, 896, 1046
ClaI ATCGAT 1 cut(s) 366
Csp6I GTAC 2 cut(s) 217, 617
CviAII CATG 5 cut(s) 38, 443, 565, 805, 1195
CviQI GTAC 2 cut(s) 217, 617
DdeI CTNAG 2 cut(s) 386, 978
DpnI GATC 5 cut(s) 50, 324, 1110, 1119, 1126
DpnII GATC 5 cut(s) 48, 322, 1108, 1117, 1124
EaeI YGGCCR 1 cut(s) 1005
Eam1104I CTCTTC 2 cut(s) 443, 659
EarI CTCTTC 2 cut(s) 443, 659
Eco130I CCWWGG 1 cut(s) 697
Eco47III AGCGCT 1 cut(s) 775
Eco57I CTGAAG 1 cut(s) 237
Eco81I CCTNAGG 1 cut(s) 978
Eco88I CYCGRG 1 cut(s) 176
EcoRII CCWGG 1 cut(s) 278
EcoT14I CCWWGG 1 cut(s) 697
ErhI CCWWGG 1 cut(s) 697
FaeI CATG 5 cut(s) 41, 446, 568, 808, 1198
FatI CATG 5 cut(s) 37, 442, 564, 804, 1194
FauI CCCGC 1 cut(s) 163
FbaI TGATCA 1 cut(s) 48
Fnu4HI GCNGC 4 cut(s) 772, 938, 1245, 1256
FokI GGATG 4 cut(s) 41, 815, 930, 1161
Fsp4HI GCNGC 4 cut(s) 772, 938, 1245, 1256
FspBI CTAG 4 cut(s) 206, 644, 842, 1161
GlaI GCGC 2 cut(s) 346, 775
GluI GCNGC 4 cut(s) 772, 938, 1245, 1256
HaeII RGCGCY 2 cut(s) 348, 777
HaeIII GGCC 5 cut(s) 540, 751, 897, 1007, 1048
HapII CCGG 4 cut(s) 747, 894, 951, 1178
HhaI GCGC 2 cut(s) 347, 776
Hin1I GRCGYC 1 cut(s) 648
Hin1II CATG 5 cut(s) 41, 446, 568, 808, 1198
Hin6I GCGC 2 cut(s) 345, 774
HinP1I GCGC 2 cut(s) 345, 774
HindIII AAGCTT 1 cut(s) 7
HinfI GANTC 1 cut(s) 1235
HpaII CCGG 4 cut(s) 747, 894, 951, 1178
HphI GGTGA 2 cut(s) 553, 736
Hpy166II GTNNAC 1 cut(s) 217
Hpy188I TCNGA 2 cut(s) 256, 292
Hpy188III TCNNGA 8 cut(s) 238, 425, 634, 689, 805, 1082, 1106, 1178
Hpy8I GTNNAC 1 cut(s) 217
Hpy99I CGWCG 2 cut(s) 407, 1156
HpyAV CCTTC 4 cut(s) 68, 244, 1216, 1260
HpyCH4III ACNGT 3 cut(s) 29, 320, 867
HpyCH4IV ACGT 1 cut(s) 648
HpyF10VI GCNNNNNNNGC 2 cut(s) 710, 771
HpyF3I CTNAG 2 cut(s) 386, 978
HpySE526I ACGT 1 cut(s) 648
Hsp92I GRCGYC 1 cut(s) 648
Hsp92II CATG 5 cut(s) 41, 446, 568, 808, 1198
HspAI GCGC 2 cut(s) 345, 774
Kpn2I TCCGGA 1 cut(s) 1177
Ksp22I TGATCA 1 cut(s) 48
Kzo9I GATC 5 cut(s) 48, 322, 1108, 1117, 1124
LmnI GCTCC 3 cut(s) 397, 701, 1252
Lsp1109I GCAGC 3 cut(s) 783, 949, 1231
LweI GCATC 6 cut(s) 276, 837, 847, 862, 908, 1183
MaeI CTAG 4 cut(s) 206, 644, 842, 1161
MaeII ACGT 1 cut(s) 648
MalI GATC 5 cut(s) 50, 324, 1110, 1119, 1126
MboI GATC 5 cut(s) 48, 322, 1108, 1117, 1124
MboII GAAGA 6 cut(s) 26, 108, 430, 646, 940, 1105
MfeI CAATTG 1 cut(s) 887
MhlI GDGCHC 1 cut(s) 394
MlsI TGGCCA 1 cut(s) 1007
MluNI TGGCCA 1 cut(s) 1007
MmeI TCCRAC 1 cut(s) 406
MnlI CCTC 9 cut(s) 147, 174, 370, 662, 971, 973, 1083, 1126, 1153
Mox20I TGGCCA 1 cut(s) 1007
MroI TCCGGA 1 cut(s) 1177
MscI TGGCCA 1 cut(s) 1007
MseI TTAA 5 cut(s) 24, 660, 942, 1068, 1265
MslI CAYNNNNRTG 1 cut(s) 916
Msp20I TGGCCA 1 cut(s) 1007
MspI CCGG 4 cut(s) 747, 894, 951, 1178
MspR9I CCNGG 2 cut(s) 280, 748
MunI CAATTG 1 cut(s) 887
Mva1269I GAATGC 1 cut(s) 1101
MvaI CCWGG 1 cut(s) 280
MvnI CGCG 1 cut(s) 1255
MwoI GCNNNNNNNGC 2 cut(s) 710, 771
NciI CCSGG 1 cut(s) 748
NdeII GATC 5 cut(s) 48, 322, 1108, 1117, 1124
NlaIII CATG 5 cut(s) 41, 446, 568, 808, 1198
NlaIV GGNNCC 2 cut(s) 975, 1209
PagI TCATGA 1 cut(s) 804
PcsI WCGNNNNNNNCGW 2 cut(s) 363, 411
PctI GAATGC 1 cut(s) 1101
PfeI GAWTC 1 cut(s) 1235
PkrI GCNGC 4 cut(s) 773, 939, 1246, 1257
PshBI ATTAAT 1 cut(s) 1265
Psp6I CCWGG 1 cut(s) 278
PspGI CCWGG 1 cut(s) 278
PspN4I GGNNCC 2 cut(s) 975, 1209
PspPI GGNCC 4 cut(s) 539, 749, 896, 1046
RsaI GTAC 2 cut(s) 218, 618
RsaNI GTAC 2 cut(s) 217, 617
RseI CAYNNNNRTG 1 cut(s) 916
SaqAI TTAA 5 cut(s) 24, 660, 942, 1068, 1265
SatI GCNGC 4 cut(s) 772, 938, 1245, 1256
Sau3AI GATC 5 cut(s) 48, 322, 1108, 1117, 1124
Sau96I GGNCC 4 cut(s) 539, 749, 896, 1046
ScrFI CCNGG 2 cut(s) 280, 748
SduI GDGCHC 1 cut(s) 394
SfaNI GCATC 6 cut(s) 276, 837, 847, 862, 908, 1183
SmiMI CAYNNNNRTG 1 cut(s) 916
SmlI CTYRAG 1 cut(s) 1087
SmoI CTYRAG 1 cut(s) 1087
SsiI CCGC 2 cut(s) 156, 1255
SspMI CTAG 4 cut(s) 206, 644, 842, 1161
StyD4I CCNGG 2 cut(s) 278, 746
StyI CCWWGG 1 cut(s) 697
TaaI ACNGT 3 cut(s) 29, 320, 867
TaiI ACGT 1 cut(s) 651
TaqI TCGA 4 cut(s) 366, 402, 414, 452
TauI GCSGC 1 cut(s) 1258
TfiI GAWTC 1 cut(s) 1235
Tru1I TTAA 5 cut(s) 24, 660, 942, 1068, 1265
Tru9I TTAA 5 cut(s) 24, 660, 942, 1068, 1265
TscAI CASTG 4 cut(s) 82, 394, 870, 1134
TseI GCWGC 3 cut(s) 771, 937, 1244
TspRI CASTG 4 cut(s) 82, 394, 870, 1134
VspI ATTAAT 1 cut(s) 1265
XapI RAATTY 4 cut(s) 91, 627, 671, 740
XspI CTAG 4 cut(s) 206, 644, 842, 1161
ZraI GACGTC 1 cut(s) 649
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.