pycom05g08600

At4g06744-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0016747
Physical Location & Seq
Reverse (-)
11221263 .. 11222830
1568 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g08600.1

Sequence Viewer

Length: 1362 bp
ATGGAGCGATCACCATTGTCTTTTAGTCACCACTTGCTACCTTCGTCTGATCTCTCAATCTCAAAAACACGCTTCTGTCGAATGGGAAATTTCAGTTTACTAAACATTGAACATCTGTTTCATGCCTTCTTCATCATCCTAATTCCTTGTTTCTTTGATGGTATAATTTGCACAGACTCTGAAAGCTCATCAATCTTACCTCCTTTAATCCCCCTTCCCCCATTACCTCCTTTAGTCTCCCTTCCCCCATTACCTCCATTAATCCCCCAACTTCTGAACTTCACAGACCAAAGACTTGCTCTTGTTTACCCTATAATCATGAGCTTTAGGAACATGATCATTTCTGATCCATTAGGCATCACTAATACCTGGGTTGGCTCAGACATATGCAACTACAAGGGTTTCTACTGTGACAACCCTCCAGACAATAAAAGTGCCACTACACTTGCCTCCATAGATTTCAATGGCTTCCAGCTCAGTGCTCCCACTCTTGATGGCTTCATTGATCAACTTCCTGACCTAGCACTTTTTCATGCTAACTCCAATAATTTCTCAGGTATCGTTTCTCCAAAAATTGCAAATCTCCAATACCTCTATGAGCTTGACTTAAGCAACAACAACTTCTCTGGCCCCTTTCCTACTGCTGTTCTCACCATGAATAGTCTATTATTCTTGGACATCCGCTACAATTCCTTCACTGGTTCCGTACCACCCCAAATTTTCGAGCAAACCCTAGAGGTCCTTTTCATTAATAACAACAATTTCATACAAAAACTCCCGGACAACCTTGGAGCTACACGAGCCCTTTATCTCACTTTAGCCAACAACAGATTCACCGGCCCAATCCCAAAAAGCATCGGCAGCGCTTCATCATCGTTGAAAGAAGTACTATTATTGAACAATTTGATCACAGGTTGCATCCCTTATGAACTAGGGTTTTTAAGAGATGCAACACTTTTTGATGCCGGAAACAACCTATTGACCGGGCCACTTCCCTGTTCATTGGGATGCTTGGACAAGATGGAGGAACTTAATTTTGCCGGAAACTTACTGTACGGAAAATTGCCGGAGGTGTTGTGCGAACTAGGAAATTTGGTCAATTTATCGCTGTCCAACAACTATTTCACGTCGGTCGGGCCTATGTGTAGGAAGCTGATAGAAAATGGGGTTCTTGACCTGAGGAAGAACTGTATTCAGCATCTTGCTGATCAAAGATCAGCGGAGGAGTGTGCCTTGTTTTTCGGGAATCCTAGAAGTTGCCCGCACCTGGCGACGTTTAGTTTACTGCCTTGTAAGGTTCCACCAAAATCGAAGGGGCATTTGGTGTCTGATAATGCGGCTTTTTTGAAGCATAGATTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

454

Amino Acids

49.98

Weight (kDa)

5.71

Isoelectric Point (pI)

33.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016747)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g05540
malus_domestica MD05G1086600.v1.1
prunus_persica Prupe.8G131300_v2.0.a1
pyrus_communis pycom05g08600
rosa_chinensis RchiOBHm_Chr6g0255851
rosa_laevigata RLG00000014811
rosa_multiflora Rmu_sc0001163.1_g000035
rosa_roxburghii Rroxscaffold_7G00209590
rosa_rugosa Rorug05G0561700
rosa_samantha Rh6AG080000 Rh6BG072900 Rh6CG070900 Rh6DG068200
rosa_wichuraiana Rw6G006900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 682, 1220, 1262, 1337
AclWI GGATC 1 cut(s) 341
AcsI RAATTY 3 cut(s) 88, 717, 1090
AfaI GTAC 3 cut(s) 708, 888, 1055
AfeI AGCGCT 1 cut(s) 865
AfiI CCNNNNNNNGG 1 cut(s) 1267
AflII CTTAAG 1 cut(s) 607
AgsI TTSAA 5 cut(s) 110, 463, 880, 898, 1348
AjiI CACGTC 1 cut(s) 1128
AjnI CCWGG 2 cut(s) 368, 1266
AjuI GAANNNNNNNTTGG 6 cut(s) 815, 847, 1106, 1138, 1304, 1336
AluBI AGCT 6 cut(s) 186, 324, 475, 601, 794, 1153
AluI AGCT 6 cut(s) 186, 324, 475, 601, 794, 1153
Alw21I GWGCWC 1 cut(s) 484
Alw26I GTCTC 1 cut(s) 241
AlwI GGATC 1 cut(s) 341
AlwNI CAGNNNCTG 1 cut(s) 179
Aor51HI AGCGCT 1 cut(s) 865
AoxI GGCC 4 cut(s) 628, 838, 986, 1136
ApeKI GCWGC 1 cut(s) 861
ApoI RAATTY 3 cut(s) 88, 717, 1090
AseI ATTAAT 2 cut(s) 260, 750
AspLEI GCGC 1 cut(s) 866
AspS9I GGNCC 5 cut(s) 629, 739, 839, 986, 1136
AsuC2I CCSGG 2 cut(s) 779, 985
AsuHPI GGTGA 4 cut(s) 3, 20, 643, 826
AvaII GGWCC 1 cut(s) 739
AxyI CCTNAGG 1 cut(s) 1178
BanII GRGCYC 1 cut(s) 805
BauI CACGAG 1 cut(s) 798
Bbv12I GWGCWC 1 cut(s) 484
BbvI GCAGC 1 cut(s) 873
BccI CCATC 3 cut(s) 152, 488, 1015
BciT130I CCWGG 2 cut(s) 370, 1268
BclI TGATCA 4 cut(s) 336, 505, 906, 1207
BcnI CCSGG 2 cut(s) 779, 985
BcoDI GTCTC 1 cut(s) 241
BfaI CTAG 5 cut(s) 521, 734, 932, 1085, 1251
BfoI RGCGCY 1 cut(s) 867
BfrI CTTAAG 1 cut(s) 607
BisI GCNGC 2 cut(s) 862, 1338
BlsI GCNGC 2 cut(s) 863, 1339
BmcAI AGTACT 1 cut(s) 888
Bme1390I CCNGG 4 cut(s) 370, 779, 985, 1268
Bme18I GGWCC 1 cut(s) 739
BmgBI CACGTC 1 cut(s) 1128
BmgT120I GGNCC 5 cut(s) 629, 739, 839, 986, 1136
BmiI GGNNCC 3 cut(s) 631, 703, 1299
BmrFI CCNGG 4 cut(s) 370, 779, 985, 1268
BmsI GCATC 7 cut(s) 366, 864, 927, 937, 952, 998, 1207
BpmI CTGGAG 1 cut(s) 405
BpuMI CCSGG 2 cut(s) 779, 985
BsaJI CCNNGG 2 cut(s) 369, 787
BsaXI ACNNNNNCTCC 4 cut(s) 759, 789, 1061, 1091
Bsc4I CCNNNNNNNGG 1 cut(s) 1267
Bse118I RCCGGY 1 cut(s) 836
Bse1I ACTGG 1 cut(s) 703
Bse21I CCTNAGG 1 cut(s) 1178
BseBI CCWGG 2 cut(s) 370, 1268
BseDI CCNNGG 2 cut(s) 369, 787
BseGI GGATG 4 cut(s) 135, 678, 918, 1013
BseLI CCNNNNNNNGG 1 cut(s) 1267
BseMII CTCAG 4 cut(s) 393, 490, 567, 1169
BseNI ACTGG 1 cut(s) 703
BseRI GAGGAG 1 cut(s) 1238
BseXI GCAGC 1 cut(s) 873
Bsh1285I CGRYCG 1 cut(s) 1134
BshFI GGCC 4 cut(s) 630, 840, 988, 1138
BsiEI CGRYCG 1 cut(s) 1134
BsiHKAI GWGCWC 1 cut(s) 484
BsiSI CCGG 6 cut(s) 779, 837, 966, 984, 1041, 1067
BslI CCNNNNNNNGG 1 cut(s) 1267
BsmAI GTCTC 1 cut(s) 241
BsnI GGCC 4 cut(s) 630, 840, 988, 1138
Bsp1286I GDGCHC 2 cut(s) 484, 805
Bsp143I GATC 8 cut(s) 8, 49, 336, 346, 505, 906, 1207, 1214
BspACI CCGC 4 cut(s) 682, 1220, 1262, 1337
BspANI GGCC 4 cut(s) 630, 840, 988, 1138
BspCNI CTCAG 4 cut(s) 392, 489, 566, 1170
BspHI TCATGA 1 cut(s) 318
BspLI GGNNCC 3 cut(s) 631, 703, 1299
BspPI GGATC 1 cut(s) 341
BspTI CTTAAG 1 cut(s) 607
BsrFI RCCGGY 1 cut(s) 836
BsrI ACTGG 1 cut(s) 703
BssAI RCCGGY 1 cut(s) 836
BssECI CCNNGG 2 cut(s) 369, 787
BssMI GATC 8 cut(s) 8, 49, 336, 346, 505, 906, 1207, 1214
BssSI CACGAG 1 cut(s) 798
BssT1I CCWWGG 1 cut(s) 787
Bst2BI CACGAG 1 cut(s) 798
Bst2UI CCWGG 2 cut(s) 370, 1268
Bst4CI ACNGT 3 cut(s) 410, 1053, 1190
BstAFI CTTAAG 1 cut(s) 607
BstC8I GCNNGC 1 cut(s) 1262
BstDEI CTNAG 4 cut(s) 379, 476, 553, 1178
BstF5I GGATG 4 cut(s) 135, 678, 918, 1013
BstH2I RGCGCY 1 cut(s) 867
BstHHI GCGC 1 cut(s) 866
BstKTI GATC 8 cut(s) 11, 52, 339, 349, 508, 909, 1210, 1217
BstMAI GTCTC 1 cut(s) 241
BstMBI GATC 8 cut(s) 8, 49, 336, 346, 505, 906, 1207, 1214
BstMCI CGRYCG 1 cut(s) 1134
BstMWI GCNNNNNNNGC 2 cut(s) 800, 861
BstNI CCWGG 2 cut(s) 370, 1268
BstSCI CCNGG 4 cut(s) 368, 777, 983, 1266
BstV1I GCAGC 1 cut(s) 873
Bsu36I CCTNAGG 1 cut(s) 1178
BsuRI GGCC 4 cut(s) 630, 840, 988, 1138
BtrI CACGTC 1 cut(s) 1128
BtsCI GGATG 4 cut(s) 135, 678, 918, 1013
BtsIMutI CAGTG 2 cut(s) 484, 696
Cac8I GCNNGC 1 cut(s) 1262
CaiI CAGNNNCTG 1 cut(s) 179
CciI TCATGA 1 cut(s) 318
CfoI GCGC 1 cut(s) 866
Cfr10I RCCGGY 1 cut(s) 836
Cfr13I GGNCC 5 cut(s) 629, 739, 839, 986, 1136
Csp6I GTAC 3 cut(s) 707, 887, 1054
CspCI CAANNNNNGTGG 2 cut(s) 427, 462
CviAII CATG 5 cut(s) 122, 319, 334, 533, 655
CviQI GTAC 3 cut(s) 707, 887, 1054
DdeI CTNAG 4 cut(s) 379, 476, 553, 1178
DpnI GATC 8 cut(s) 10, 51, 338, 348, 507, 908, 1209, 1216
DpnII GATC 8 cut(s) 8, 49, 336, 346, 505, 906, 1207, 1214
Eco130I CCWWGG 1 cut(s) 787
Eco24I GRGCYC 1 cut(s) 805
Eco47I GGWCC 1 cut(s) 739
Eco47III AGCGCT 1 cut(s) 865
Eco81I CCTNAGG 1 cut(s) 1178
EcoO109I RGGNCCY 1 cut(s) 739
EcoRII CCWGG 2 cut(s) 368, 1266
EcoT14I CCWWGG 1 cut(s) 787
EcoT38I GRGCYC 1 cut(s) 805
ErhI CCWWGG 1 cut(s) 787
FaeI CATG 5 cut(s) 125, 322, 337, 536, 658
FatI CATG 5 cut(s) 121, 318, 333, 532, 654
FauI CCCGC 1 cut(s) 1269
FauNDI CATATG 1 cut(s) 386
FbaI TGATCA 4 cut(s) 336, 505, 906, 1207
Fnu4HI GCNGC 2 cut(s) 862, 1338
FokI GGATG 4 cut(s) 122, 665, 905, 1020
FriOI GRGCYC 1 cut(s) 805
Fsp4HI GCNGC 2 cut(s) 862, 1338
FspBI CTAG 5 cut(s) 521, 734, 932, 1085, 1251
GlaI GCGC 1 cut(s) 865
GluI GCNGC 2 cut(s) 862, 1338
GsuI CTGGAG 1 cut(s) 405
HaeII RGCGCY 1 cut(s) 867
HaeIII GGCC 4 cut(s) 630, 840, 988, 1138
HapII CCGG 6 cut(s) 779, 837, 966, 984, 1041, 1067
HhaI GCGC 1 cut(s) 866
Hin1II CATG 5 cut(s) 125, 322, 337, 536, 658
Hin6I GCGC 1 cut(s) 864
HinP1I GCGC 1 cut(s) 864
HinfI GANTC 3 cut(s) 176, 831, 1246
HpaII CCGG 6 cut(s) 779, 837, 966, 984, 1041, 1067
HphI GGTGA 4 cut(s) 3, 20, 643, 826
Hpy166II GTNNAC 3 cut(s) 98, 307, 1283
Hpy188I TCNGA 6 cut(s) 49, 181, 276, 346, 382, 1330
Hpy188III TCNNGA 6 cut(s) 319, 422, 491, 515, 1172, 1243
Hpy8I GTNNAC 3 cut(s) 98, 307, 1283
Hpy99I CGWCG 2 cut(s) 1132, 1276
HpyAV CCTTC 6 cut(s) 51, 136, 224, 251, 703, 1306
HpyCH4III ACNGT 3 cut(s) 410, 1053, 1190
HpyCH4IV ACGT 2 cut(s) 1127, 1274
HpyCH4V TGCA 5 cut(s) 171, 390, 578, 918, 950
HpyF10VI GCNNNNNNNGC 2 cut(s) 800, 861
HpyF3I CTNAG 4 cut(s) 379, 476, 553, 1178
HpySE526I ACGT 2 cut(s) 1127, 1274
Hsp92II CATG 5 cut(s) 125, 322, 337, 536, 658
HspAI GCGC 1 cut(s) 864
Ksp22I TGATCA 4 cut(s) 336, 505, 906, 1207
Kzo9I GATC 8 cut(s) 8, 49, 336, 346, 505, 906, 1207, 1214
LmnI GCTCC 3 cut(s) 4, 487, 791
Lsp1109I GCAGC 1 cut(s) 873
LweI GCATC 7 cut(s) 366, 864, 927, 937, 952, 998, 1207
MaeI CTAG 5 cut(s) 521, 734, 932, 1085, 1251
MaeII ACGT 2 cut(s) 1127, 1274
MaeIII GTNAC 2 cut(s) 26, 410
MalI GATC 8 cut(s) 10, 51, 338, 348, 507, 908, 1209, 1216
MboI GATC 8 cut(s) 8, 49, 336, 346, 505, 906, 1207, 1214
MboII GAAGA 2 cut(s) 121, 1195
MhlI GDGCHC 2 cut(s) 484, 805
MlyI GAGTC 1 cut(s) 170
MmeI TCCRAC 1 cut(s) 1137
MseI TTAA 6 cut(s) 206, 260, 608, 750, 941, 1032
MslI CAYNNNNRTG 1 cut(s) 1006
MspA1I CMGCKG 1 cut(s) 1220
MspCI CTTAAG 1 cut(s) 607
MspI CCGG 6 cut(s) 779, 837, 966, 984, 1041, 1067
MspR9I CCNGG 4 cut(s) 370, 779, 985, 1268
MvaI CCWGG 2 cut(s) 370, 1268
MwoI GCNNNNNNNGC 2 cut(s) 800, 861
NciI CCSGG 2 cut(s) 779, 985
NdeI CATATG 1 cut(s) 386
NdeII GATC 8 cut(s) 8, 49, 336, 346, 505, 906, 1207, 1214
NlaIII CATG 5 cut(s) 125, 322, 337, 536, 658
NlaIV GGNNCC 3 cut(s) 631, 703, 1299
NmuCI GTSAC 2 cut(s) 26, 410
PagI TCATGA 1 cut(s) 318
PcsI WCGNNNNNNNCGW 1 cut(s) 76
PfeI GAWTC 2 cut(s) 831, 1246
PfoI TCCNGGA 1 cut(s) 777
PkrI GCNGC 2 cut(s) 863, 1339
PleI GAGTC 1 cut(s) 170
PpsI GAGTC 1 cut(s) 170
PpuMI RGGWCCY 1 cut(s) 739
PshBI ATTAAT 2 cut(s) 260, 750
Psp5II RGGWCCY 1 cut(s) 739
Psp6I CCWGG 2 cut(s) 368, 1266
PspGI CCWGG 2 cut(s) 368, 1266
PspN4I GGNNCC 3 cut(s) 631, 703, 1299
PspPI GGNCC 5 cut(s) 629, 739, 839, 986, 1136
PspPPI RGGWCCY 1 cut(s) 739
PstNI CAGNNNCTG 1 cut(s) 179
RsaI GTAC 3 cut(s) 708, 888, 1055
RsaNI GTAC 3 cut(s) 707, 887, 1054
RseI CAYNNNNRTG 1 cut(s) 1006
SaqAI TTAA 6 cut(s) 206, 260, 608, 750, 941, 1032
SatI GCNGC 2 cut(s) 862, 1338
Sau3AI GATC 8 cut(s) 8, 49, 336, 346, 505, 906, 1207, 1214
Sau96I GGNCC 5 cut(s) 629, 739, 839, 986, 1136
ScaI AGTACT 1 cut(s) 888
SchI GAGTC 1 cut(s) 170
ScrFI CCNGG 4 cut(s) 370, 779, 985, 1268
SduI GDGCHC 2 cut(s) 484, 805
SfaNI GCATC 7 cut(s) 366, 864, 927, 937, 952, 998, 1207
SinI GGWCC 1 cut(s) 739
SmiMI CAYNNNNRTG 1 cut(s) 1006
SmlI CTYRAG 1 cut(s) 607
SmoI CTYRAG 1 cut(s) 607
SsiI CCGC 4 cut(s) 682, 1220, 1262, 1337
SspMI CTAG 5 cut(s) 521, 734, 932, 1085, 1251
StyD4I CCNGG 4 cut(s) 368, 777, 983, 1266
StyI CCWWGG 1 cut(s) 787
TaaI ACNGT 3 cut(s) 410, 1053, 1190
TaiI ACGT 2 cut(s) 1130, 1277
TaqI TCGA 3 cut(s) 79, 723, 1310
TaqII GACCGA 1 cut(s) 1120
TatI WGTACW 1 cut(s) 886
TauI GCSGC 1 cut(s) 1340
TfiI GAWTC 2 cut(s) 831, 1246
Tru1I TTAA 6 cut(s) 206, 260, 608, 750, 941, 1032
Tru9I TTAA 6 cut(s) 206, 260, 608, 750, 941, 1032
TscAI CASTG 2 cut(s) 484, 703
TseFI GTSAC 2 cut(s) 26, 410
TseI GCWGC 1 cut(s) 861
Tsp45I GTSAC 2 cut(s) 26, 410
TspGWI ACGGA 2 cut(s) 694, 1071
TspRI CASTG 2 cut(s) 484, 703
Vha464I CTTAAG 1 cut(s) 607
VpaK11BI GGWCC 1 cut(s) 739
VspI ATTAAT 2 cut(s) 260, 750
XapI RAATTY 3 cut(s) 88, 717, 1090
XspI CTAG 5 cut(s) 521, 734, 932, 1085, 1251
ZrmI AGTACT 1 cut(s) 888
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.