Rorug05G0561700

At4g06744-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0004065
Physical Location & Seq
Forward (+)
75277334 .. 75281800
4467 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0561700.1

Sequence Viewer

Length: 1293 bp
ATGGAGTCAGATCTTCAGCAGCCACATCATAAAACCCAGCAGCATATGAACTCCAGCTTGTTGCGGTATCGATCAGCACCGAGTTCTTATTTCGCAAATGTTTTGGACACAGAATTCAATGAGCCCTTCTTCAACCGAGCCACTAGCCCCGAAACTGAGCGAATTTTAGCTCGATTTATGAGTAGTCAAGGTGGTGATGGTGGAGGAACAGAAGAAATTGTACCACATCAGAAAGTAGCAACAGATCAGCAACCACAGTTTTTGGTGCCTAAGGTGGATAATGAAGCAGCAATGATTCAACAACAACAACAGCAGCAGCAGGAGCAGCAGCAACAACAGCAGCAGCAGAGTCATATAAACAACTATACATCTCAGGGCTTTTACCAAATTCCATCTTCGAAACCGCCTTTGCCGAATCAGAATATGGCTTCATCTAATGAAGGAGCATCTGCTGCTGCTTATCCAATGGGGTCAAATCAGTTGCCTCCAATGAAAACTGGTGGTGTAACTCACTCGAATCTTATTAGGCATAGTAGCTCTCCTGCTGGACTTTTCGCCAATATCAATATTGATGTGGCAGGGTATGCTGCATTGAGAGGCATGGGAAATTTCGGAGTGACTAATAGCACCAATGAAGAAGCATCATTTTCTCCTGCAAGCAGGTTGAAGAACTTCTCATCAGGACCACCACCATCTACGTCCGGCATAATGAGTCCAATTTCCCAAATTGGGGAGAAAAGAATGCGATCGAATAATCAAGAACCCACCGGATCCGGAGGTCGGTTTAGTGAAGGTCATAGTAACAATTATGTCTCAGGTTTCCCCATTGGTTCATGGGAAGACTCTTCTCTTTTGGGGGATGATATCATTGGTTCAACTACCTTTAGAGATGATGATGATGATGTGAAAACAATTACTGGTCTAAGTGCTTCAGAAACTCAGAATATGGAAGCAAGAAGTCGCCCTCTGGCTCATCACTTAAGCTTGCCAAAAACATCAGCAGAAATGGCTGCCATTGAAAATTTCTTGCAGTTTCAAGATTCTGTGCCTTGTAAGATTCGAGCAAAGCGGGGTTGTGCCACACACCCTCGAAGCATTGCTGAGAGGGTGAGAAGAACCCGAATCAGTGAAAGAATGAGGAAACTACAAGAGCTTGTACCTAACATGGACAAGCAAACCAACACTGCAGACATGTTAGATTTGGCTGTTGACTACATCAAAGACCTTCAAACTGAAGTCCAGACGCTGTCAGAAGCTCGTGCTAAGTGTACGTGTTCAAGCAAGCAGCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2

Protein Analysis

430

Amino Acids

47.32

Weight (kDa)

6.14

Isoelectric Point (pI)

63.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HLH PF00010 365 - 410 9.2e-10 Helix-loop-helix DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 651
AccB1I GGYRCC 1 cut(s) 265
AccIII TCCGGA 1 cut(s) 773
AciI CCGC 3 cut(s) 64, 404, 1069
AclWI GGATC 2 cut(s) 765, 778
AcsI RAATTY 5 cut(s) 113, 162, 387, 607, 1021
AcuI CTGAAG 2 cut(s) 915, 1254
AfaI GTAC 3 cut(s) 222, 1158, 1270
AfiI CCNNNNNNNGG 3 cut(s) 729, 730, 780
AflII CTTAAG 1 cut(s) 979
AflIII ACRYGT 2 cut(s) 1191, 1271
AgsI TTSAA 9 cut(s) 118, 133, 299, 667, 876, 1019, 1037, 1229, 1278
AluBI AGCT 6 cut(s) 57, 170, 537, 984, 1153, 1256
AluI AGCT 6 cut(s) 57, 170, 537, 984, 1153, 1256
Alw26I GTCTC 1 cut(s) 817
AlwI GGATC 2 cut(s) 765, 778
AlwNI CAGNNNCTG 1 cut(s) 1246
Aor13HI TCCGGA 1 cut(s) 773
ApoI RAATTY 5 cut(s) 113, 162, 387, 607, 1021
Asp700I GAANNNNTTC 1 cut(s) 671
AspS9I GGNCC 1 cut(s) 683
AsuHPI GGTGA 2 cut(s) 206, 1120
AsuII TTCGAA 1 cut(s) 398
AvaII GGWCC 1 cut(s) 683
AxyI CCTNAGG 1 cut(s) 270
BamHI GGATCC 1 cut(s) 770
BanI GGYRCC 1 cut(s) 265
BanII GRGCYC 1 cut(s) 126
BarI GAAGNNNNNNTAC 2 cut(s) 204, 236
BauI CACGAG 1 cut(s) 1257
BbsI GAAGAC 1 cut(s) 846
BccI CCATC 3 cut(s) 191, 400, 700
BcoDI GTCTC 1 cut(s) 817
BfaI CTAG 1 cut(s) 144
BfmI CTRYAG 1 cut(s) 1185
BfrI CTTAAG 1 cut(s) 979
BfuAI ACCTGC 1 cut(s) 651
BglII AGATCT 1 cut(s) 10
Bme18I GGWCC 1 cut(s) 683
BmgT120I GGNCC 1 cut(s) 683
BmiI GGNNCC 2 cut(s) 267, 772
BmsI GCATC 2 cut(s) 455, 650
BpiI GAAGAC 1 cut(s) 846
BpmI CTGGAG 1 cut(s) 37
Bpu14I TTCGAA 1 cut(s) 398
Bsa29I ATCGAT 1 cut(s) 70
BsaAI YACGTR 1 cut(s) 1272
BsaWI WCCGGW 2 cut(s) 767, 773
Bsc4I CCNNNNNNNGG 3 cut(s) 729, 730, 780
Bse1I ACTGG 2 cut(s) 502, 922
Bse21I CCTNAGG 1 cut(s) 270
Bse3DI GCAATG 2 cut(s) 297, 1095
BseAI TCCGGA 1 cut(s) 773
BseCI ATCGAT 1 cut(s) 70
BseGI GGATG 1 cut(s) 865
BseLI CCNNNNNNNGG 3 cut(s) 729, 730, 780
BseMI GCAATG 2 cut(s) 297, 1095
BseMII CTCAG 5 cut(s) 147, 386, 828, 953, 1092
BseNI ACTGG 2 cut(s) 502, 922
BseYI CCCAGC 1 cut(s) 36
Bsh1285I CGRYCG 1 cut(s) 749
BshNI GGYRCC 1 cut(s) 265
BshVI ATCGAT 1 cut(s) 70
BsiEI CGRYCG 1 cut(s) 749
BsiSI CCGG 3 cut(s) 702, 768, 774
BslI CCNNNNNNNGG 3 cut(s) 729, 730, 780
BsmAI GTCTC 1 cut(s) 817
BsmI GAATGC 1 cut(s) 747
Bsp119I TTCGAA 1 cut(s) 398
Bsp1286I GDGCHC 1 cut(s) 126
Bsp13I TCCGGA 1 cut(s) 773
Bsp143I GATC 5 cut(s) 10, 71, 244, 746, 770
BspACI CCGC 3 cut(s) 64, 404, 1069
BspCNI CTCAG 5 cut(s) 148, 385, 827, 952, 1093
BspDI ATCGAT 1 cut(s) 70
BspEI TCCGGA 1 cut(s) 773
BspLI GGNNCC 2 cut(s) 267, 772
BspMAI CTGCAG 1 cut(s) 1189
BspMI ACCTGC 1 cut(s) 651
BspPI GGATC 2 cut(s) 765, 778
BspT104I TTCGAA 1 cut(s) 398
BspT107I GGYRCC 1 cut(s) 265
BspTI CTTAAG 1 cut(s) 979
BsrDI GCAATG 2 cut(s) 297, 1095
BsrI ACTGG 2 cut(s) 502, 922
BssMI GATC 5 cut(s) 10, 71, 244, 746, 770
BssSI CACGAG 1 cut(s) 1257
Bst2BI CACGAG 1 cut(s) 1257
Bst4CI ACNGT 1 cut(s) 258
Bst6I CTCTTC 1 cut(s) 850
BstAFI CTTAAG 1 cut(s) 979
BstAPI GCANNNNNTGC 2 cut(s) 452, 584
BstBAI YACGTR 1 cut(s) 1272
BstBI TTCGAA 1 cut(s) 398
BstC8I GCNNGC 3 cut(s) 658, 986, 1283
BstDEI CTNAG 8 cut(s) 156, 270, 372, 814, 923, 939, 1101, 1263
BstF5I GGATG 1 cut(s) 865
BstKTI GATC 5 cut(s) 13, 74, 247, 749, 773
BstMAI GTCTC 1 cut(s) 817
BstMBI GATC 5 cut(s) 10, 71, 244, 746, 770
BstMCI CGRYCG 1 cut(s) 749
BstMWI GCNNNNNNNGC 6 cut(s) 322, 325, 337, 452, 584, 1007
BstNSI RCATGY 1 cut(s) 1195
BstSFI CTRYAG 1 cut(s) 1185
BstV2I GAAGAC 1 cut(s) 846
BstX2I RGATCY 2 cut(s) 10, 770
BstYI RGATCY 2 cut(s) 10, 770
Bsu15I ATCGAT 1 cut(s) 70
Bsu36I CCTNAGG 1 cut(s) 270
BsuTUI ATCGAT 1 cut(s) 70
BtsCI GGATG 1 cut(s) 865
BtsI GCAGTG 1 cut(s) 1182
BtsIMutI CAGTG 2 cut(s) 1132, 1182
BveI ACCTGC 1 cut(s) 651
Cac8I GCNNGC 3 cut(s) 658, 986, 1283
CaiI CAGNNNCTG 1 cut(s) 1246
Cfr13I GGNCC 1 cut(s) 683
ClaI ATCGAT 1 cut(s) 70
CseI GACGC 1 cut(s) 1252
Csp6I GTAC 3 cut(s) 221, 1157, 1269
CspCI CAANNNNNGTGG 2 cut(s) 243, 278
CviAII CATG 4 cut(s) 601, 834, 1165, 1192
CviQI GTAC 3 cut(s) 221, 1157, 1269
DdeI CTNAG 8 cut(s) 156, 270, 372, 814, 923, 939, 1101, 1263
DpnI GATC 5 cut(s) 12, 73, 246, 748, 772
DpnII GATC 5 cut(s) 10, 71, 244, 746, 770
Eam1104I CTCTTC 1 cut(s) 850
EarI CTCTTC 1 cut(s) 850
Eco24I GRGCYC 1 cut(s) 126
Eco32I GATATC 1 cut(s) 865
Eco47I GGWCC 1 cut(s) 683
Eco57I CTGAAG 2 cut(s) 915, 1254
Eco81I CCTNAGG 1 cut(s) 270
EcoRI GAATTC 1 cut(s) 113
EcoRV GATATC 1 cut(s) 865
EcoT38I GRGCYC 1 cut(s) 126
FaeI CATG 4 cut(s) 604, 837, 1168, 1195
FatI CATG 4 cut(s) 600, 833, 1164, 1191
FauI CCCGC 1 cut(s) 1062
FauNDI CATATG 1 cut(s) 45
FokI GGATG 1 cut(s) 872
FriOI GRGCYC 1 cut(s) 126
FspBI CTAG 1 cut(s) 144
GsaI CCCAGC 1 cut(s) 40
GsuI CTGGAG 1 cut(s) 37
HapII CCGG 3 cut(s) 702, 768, 774
HgaI GACGC 1 cut(s) 1252
Hin1II CATG 4 cut(s) 604, 837, 1168, 1195
HincII GTYRAC 1 cut(s) 1210
HindII GTYRAC 1 cut(s) 1210
HindIII AAGCTT 1 cut(s) 982
HpaII CCGG 3 cut(s) 702, 768, 774
HphI GGTGA 2 cut(s) 206, 1120
Hpy166II GTNNAC 2 cut(s) 1210, 1269
Hpy188I TCNGA 7 cut(s) 10, 231, 420, 614, 934, 942, 1252
Hpy188III TCNNGA 5 cut(s) 681, 758, 774, 1037, 1240
Hpy8I GTNNAC 2 cut(s) 1210, 1269
HpyAV CCTTC 4 cut(s) 136, 434, 785, 1235
HpyCH4III ACNGT 1 cut(s) 258
HpyCH4IV ACGT 2 cut(s) 698, 1271
HpyCH4V TGCA 4 cut(s) 590, 656, 1030, 1187
HpyF10VI GCNNNNNNNGC 6 cut(s) 322, 325, 337, 452, 584, 1007
HpyF3I CTNAG 8 cut(s) 156, 270, 372, 814, 923, 939, 1101, 1263
HpySE526I ACGT 2 cut(s) 698, 1271
Hsp92II CATG 4 cut(s) 604, 837, 1168, 1195
Kpn2I TCCGGA 1 cut(s) 773
Kzo9I GATC 5 cut(s) 10, 71, 244, 746, 770
LmnI GCTCC 2 cut(s) 322, 443
LweI GCATC 2 cut(s) 455, 650
MaeI CTAG 1 cut(s) 144
MaeII ACGT 2 cut(s) 698, 1271
MaeIII GTNAC 3 cut(s) 505, 616, 800
MalI GATC 5 cut(s) 12, 73, 246, 748, 772
MboI GATC 5 cut(s) 10, 71, 244, 746, 770
MboII GAAGA 9 cut(s) 5, 121, 224, 387, 647, 679, 837, 851, 1125
MflI RGATCY 2 cut(s) 10, 770
MhlI GDGCHC 1 cut(s) 126
MlyI GAGTC 4 cut(s) 14, 358, 721, 836
MnlI CCTC 8 cut(s) 197, 495, 590, 770, 975, 1098, 1098, 1131
MroI TCCGGA 1 cut(s) 773
MroXI GAANNNNTTC 1 cut(s) 671
MseI TTAA 1 cut(s) 980
MspCI CTTAAG 1 cut(s) 979
MspI CCGG 3 cut(s) 702, 768, 774
Mva1269I GAATGC 1 cut(s) 747
MwoI GCNNNNNNNGC 6 cut(s) 322, 325, 337, 452, 584, 1007
NdeI CATATG 1 cut(s) 45
NdeII GATC 5 cut(s) 10, 71, 244, 746, 770
NlaIII CATG 4 cut(s) 604, 837, 1168, 1195
NlaIV GGNNCC 2 cut(s) 267, 772
NmuCI GTSAC 1 cut(s) 616
NspI RCATGY 1 cut(s) 1195
NspV TTCGAA 1 cut(s) 398
PciI ACATGT 1 cut(s) 1191
PctI GAATGC 1 cut(s) 747
PdmI GAANNNNTTC 1 cut(s) 671
PfeI GAWTC 6 cut(s) 295, 415, 517, 1040, 1057, 1122
PflFI GACNNNGTC 1 cut(s) 1246
Ple19I CGATCG 1 cut(s) 749
PleI GAGTC 4 cut(s) 13, 357, 720, 836
PpsI GAGTC 4 cut(s) 13, 357, 720, 836
Ppu21I YACGTR 1 cut(s) 1272
PscI ACATGT 1 cut(s) 1191
PspFI CCCAGC 1 cut(s) 36
PspN4I GGNNCC 2 cut(s) 267, 772
PspPI GGNCC 1 cut(s) 683
PstI CTGCAG 1 cut(s) 1189
PstNI CAGNNNCTG 1 cut(s) 1246
PsuI RGATCY 2 cut(s) 10, 770
PsyI GACNNNGTC 1 cut(s) 1246
PvuI CGATCG 1 cut(s) 749
RsaI GTAC 3 cut(s) 222, 1158, 1270
RsaNI GTAC 3 cut(s) 221, 1157, 1269
SaqAI TTAA 1 cut(s) 980
Sau3AI GATC 5 cut(s) 10, 71, 244, 746, 770
Sau96I GGNCC 1 cut(s) 683
SchI GAGTC 4 cut(s) 14, 358, 721, 836
SduI GDGCHC 1 cut(s) 126
SfaNI GCATC 2 cut(s) 455, 650
SfcI CTRYAG 1 cut(s) 1185
SfuI TTCGAA 1 cut(s) 398
SinI GGWCC 1 cut(s) 683
SmlI CTYRAG 1 cut(s) 979
SmoI CTYRAG 1 cut(s) 979
SsiI CCGC 3 cut(s) 64, 404, 1069
SspI AATATT 1 cut(s) 568
SspMI CTAG 1 cut(s) 144
TaaI ACNGT 1 cut(s) 258
TaiI ACGT 2 cut(s) 701, 1274
TaqI TCGA 7 cut(s) 70, 172, 398, 515, 749, 1060, 1090
TfiI GAWTC 6 cut(s) 295, 415, 517, 1040, 1057, 1122
Tru1I TTAA 1 cut(s) 980
Tru9I TTAA 1 cut(s) 980
TscAI CASTG 2 cut(s) 1132, 1189
TseFI GTSAC 1 cut(s) 616
Tsp45I GTSAC 1 cut(s) 616
TspDTI ATGAA 7 cut(s) 62, 297, 420, 453, 506, 648, 822
TspRI CASTG 2 cut(s) 1132, 1189
Tth111I GACNNNGTC 1 cut(s) 1246
Vha464I CTTAAG 1 cut(s) 979
VpaK11BI GGWCC 1 cut(s) 683
XapI RAATTY 5 cut(s) 113, 162, 387, 607, 1021
XceI RCATGY 1 cut(s) 1195
XmnI GAANNNNTTC 1 cut(s) 671
XspI CTAG 1 cut(s) 144
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.