Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0004065

Physical Location & Seq

Genomic Coordinates Reverse (-)

15380771 .. 15382485

Gene Structure 1715 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G131400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1251 bp

ATGGGCACCATTTCTTTCTGTGCTTCCCTTCTGCTTGCAACCCTATTTCTACATTTGTGTTTTCAACAAGAGGTTGAAGCCCAACCAGGCCCCTTTATAAACAACCGACTTAGAAATGCCTTCAATGTGATCCAAGCTTTCAAACGTAGAATCCAATCCGACCCCAAAAACTACACAGGAACATGGGTGGGCAACAACGTCTGCAAATATAAGGGCTTCACCTGCGCAGTTGTCCCTGACCTGAAGAAGTTAACGGTCATCGGAGTCAGCTTCAATGGAGCTTTGTTTGGCGGCTTTAACAACAGGCTGCCTCTCAATGGCTTCATTGACAGGTTGGAGGACTTGGTGTTCTTCCATGCAAACTCCAACAACTTCACGGGCACCGTCCCTAGAGGCACTGCCAGGCACAGATTCTTCTATGAGCTTGATCTCAGCAACAACAAGCTAACTGGAGGCTTCCCAAATGAAACTCTTGCGGCCACAAACTTGACCTTCTTGGACCTCCGGTTCAACTCGTTCAACGCCACGGTTCCACCAAAAGTGTTTAACCTAGATGTTGACCTCCTCTTCCTCAACAACAACAATTTCCAGCAGCGACTTCCAGGCAATCTTGGCTCCACACGTGCCCATTATCTCACCTTTGCCAACAACAAGTTCGTTGGTTCAATCCCAAGGAGCATTCGAAACGCTAGGAACACCCTTTATGAGGTTCTCTTCCTAGGGAACCGGCTTTCAGGGTGTCTGCCGTACGAAATCGGGTACCTGAAACAGGCAACCGTGTTTGATGTGAGCTCCAACATCCTAACAGGCCCCATACCAAACTCATTTGCTTGCTTGGGGAAGCTGGAGTATCTGAGCTTGGCCAGTAACCAGTTCTATGGGAGGGTGCCCGAGGCTGTGTGCGGGTTGCGCCACCTAGAGAGATTTAATGCGGCAAACAACTATTTCACTCGGATAGGACCAGCTTGTATGACGTTGATCAGGAAGAAGATTCTTGATGTCAGAGGGAACTGCCTTCCGGGGCTCCCAAATCAGAAGACAGCTGCTCAATGTGCTGCCTTCTTCTCTATACCCAGAACTTGTCCCAGACGGACAAGGTTGAGTATAATTCCTTGCACAAGATCACTTTCAGCTTTGAATGAGACGAACGCAGATATTAATGAAGACCAATTGACCACCAAAGCATATAATATTCAAGCACCAGCCGAAGCCCCACGAACTTATGCTACTCTTATGCCGCATGGGCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2

Protein Analysis

417

Amino Acids

46.38

Weight (kDa)

9.58

Isoelectric Point (pI)

34.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004065)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49750 AT3G19320
fragaria_vesca	FvH4_2g05530
malus_domestica	MD00G1014300.v1.1 MD05G1086700.v1.1
prunus_persica	Prupe.8G131400_v2.0.a1 Prupe.8G131500_v2.0.a1
pyrus_communis	pycom05g08610 pycom10g08130
rosa_chinensis	RchiOBHm_Chr4g0387761 RchiOBHm_Chr6g0255781 RchiOBHm_Chr6g0255841
rosa_laevigata	RLG00000014812 RLG00000014813
rosa_multiflora	Rmu_sc0001163.1_g000027 Rmu_sc0001163.1_g000029 Rmu_sc0004935.1_g000023
rosa_roxburghii	Rroxscaffold_7G00209620 Rroxscaffold_7G00209650
rosa_rugosa	Rorug05G0561500 Rorug05G0561700
rosa_samantha	Rh1AG424200 Rh4BG013200 Rh6AG079500 Rh6AG079800 Rh6BG072600 Rh6BG072700 Rh6CG070700 Rh6CG070800 Rh6DG068000 Rh6DG068100
rosa_wichuraiana	Rw6G006850 Rw6G006880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	98
AarI	CACCTGC	1 cut(s)	230
Acc16I	TGCGCA	1 cut(s)	226
Acc36I	ACCTGC	1 cut(s)	230
Acc65I	GGTACC	1 cut(s)	759
AccB1I	GGYRCC	4 cut(s)	5, 380, 759, 886
AciI	CCGC	5 cut(s)	291, 476, 903, 932, 1238
AclWI	GGATC	1 cut(s)	124
AcoI	YGGCCR	2 cut(s)	477, 861
AcuI	CTGAAG	1 cut(s)	263
AcvI	CACGTG	1 cut(s)	623
AfaI	GTAC	2 cut(s)	749, 761
AfiI	CCNNNNNNNGG	3 cut(s)	317, 706, 769
AflIII	ACRYGT	1 cut(s)	620
AjnI	CCWGG	3 cut(s)	85, 401, 601
AjuI	GAANNNNNNNTTGG	2 cut(s)	638, 670
AloI	GAACNNNNNNTCC	4 cut(s)	332, 364, 491, 523
Alw21I	GWGCWC	1 cut(s)	794
Alw26I	GTCTC	1 cut(s)	1136
AlwI	GGATC	1 cut(s)	124
Ama87I	CYCGRG	1 cut(s)	890
AoxI	GGCC	4 cut(s)	88, 477, 808, 861
ApeKI	GCWGC	4 cut(s)	307, 592, 1043, 1055
AseI	ATTAAT	1 cut(s)	1158
Asp718I	GGTACC	1 cut(s)	759
AspA2I	CCTAGG	1 cut(s)	718
AspLEI	GCGC	2 cut(s)	227, 912
AspS9I	GGNCC	4 cut(s)	89, 499, 809, 959
AsuC2I	CCSGG	1 cut(s)	1020
AsuHPI	GGTGA	2 cut(s)	211, 628
AsuII	TTCGAA	1 cut(s)	682
AvaI	CYCGRG	1 cut(s)	890
AvaII	GGWCC	2 cut(s)	499, 959
AvrII	CCTAGG	1 cut(s)	718
BaeGI	GKGCMC	4 cut(s)	8, 383, 628, 891
BalI	TGGCCA	1 cut(s)	863
BanI	GGYRCC	4 cut(s)	5, 380, 759, 886
BanII	GRGCYC	2 cut(s)	794, 1026
BbrPI	CACGTG	1 cut(s)	623
BbsI	GAAGAC	2 cut(s)	1043, 1170
Bbv12I	GWGCWC	1 cut(s)	794
BbvI	GCAGC	4 cut(s)	294, 604, 1030, 1042
BceAI	ACGGC	1 cut(s)	730
BciT130I	CCWGG	3 cut(s)	87, 403, 603
BclI	TGATCA	1 cut(s)	978
BcnI	CCSGG	1 cut(s)	1020
BcoDI	GTCTC	1 cut(s)	1136
BfaI	CTAG	5 cut(s)	390, 551, 690, 719, 917
BfuAI	ACCTGC	1 cut(s)	230
BglI	GCCNNNNNGGC	1 cut(s)	1243
BisI	GCNGC	8 cut(s)	292, 308, 477, 593, 933, 1044, 1056, 1238
BlnI	CCTAGG	1 cut(s)	718
BlsI	GCNGC	8 cut(s)	293, 309, 478, 594, 934, 1045, 1057, 1239
Bme1390I	CCNGG	4 cut(s)	87, 403, 603, 1020
Bme18I	GGWCC	2 cut(s)	499, 959
BmeT110I	CYCGRG	1 cut(s)	890
BmgT120I	GGNCC	4 cut(s)	89, 499, 809, 959
BmrFI	CCNGG	4 cut(s)	87, 403, 603, 1020
BpiI	GAAGAC	2 cut(s)	1043, 1170
BpmI	CTGGAG	2 cut(s)	471, 866
Bpu14I	TTCGAA	1 cut(s)	682
BpuMI	CCSGG	1 cut(s)	1020
BsaAI	YACGTR	1 cut(s)	623
BsaJI	CCNNGG	5 cut(s)	525, 671, 718, 891, 1019
BsaWI	WCCGGW	1 cut(s)	504
Bsc4I	CCNNNNNNNGG	3 cut(s)	317, 706, 769
Bse118I	RCCGGY	1 cut(s)	726
Bse1I	ACTGG	3 cut(s)	454, 864, 871
BseBI	CCWGG	3 cut(s)	87, 403, 603
BseDI	CCNNGG	5 cut(s)	525, 671, 718, 891, 1019
BseGI	GGATG	1 cut(s)	798
BseLI	CCNNNNNNNGG	3 cut(s)	317, 706, 769
BseMII	CTCAG	2 cut(s)	445, 845
BseNI	ACTGG	3 cut(s)	454, 864, 871
BseRI	GAGGAG	1 cut(s)	554
BseSI	GKGCMC	4 cut(s)	8, 383, 628, 891
BseXI	GCAGC	4 cut(s)	294, 604, 1030, 1042
BshFI	GGCC	4 cut(s)	90, 479, 810, 863
BshNI	GGYRCC	4 cut(s)	5, 380, 759, 886
BsiHKAI	GWGCWC	1 cut(s)	794
BsiHKCI	CYCGRG	1 cut(s)	890
BsiSI	CCGG	3 cut(s)	505, 727, 1019
BsiWI	CGTACG	1 cut(s)	747
BslFI	GGGAC	3 cut(s)	218, 371, 1068
BslI	CCNNNNNNNGG	3 cut(s)	317, 706, 769
BsmAI	GTCTC	1 cut(s)	1136
BsmBI	CGTCTC	1 cut(s)	1136
BsmFI	GGGAC	3 cut(s)	218, 371, 1068
BsmI	GAATGC	1 cut(s)	678
BsnI	GGCC	4 cut(s)	90, 479, 810, 863
BsoBI	CYCGRG	1 cut(s)	890
Bsp119I	TTCGAA	1 cut(s)	682
Bsp1286I	GDGCHC	6 cut(s)	8, 383, 628, 794, 891, 1026
Bsp143I	GATC	4 cut(s)	129, 427, 978, 1121
BspACI	CCGC	5 cut(s)	291, 476, 903, 932, 1238
BspANI	GGCC	4 cut(s)	90, 479, 810, 863
BspCNI	CTCAG	2 cut(s)	444, 846
BspMI	ACCTGC	1 cut(s)	230
BspPI	GGATC	1 cut(s)	124
BspT104I	TTCGAA	1 cut(s)	682
BspT107I	GGYRCC	4 cut(s)	5, 380, 759, 886
BsrFI	RCCGGY	1 cut(s)	726
BsrI	ACTGG	3 cut(s)	454, 864, 871
BssAI	RCCGGY	1 cut(s)	726
BssECI	CCNNGG	5 cut(s)	525, 671, 718, 891, 1019
BssMI	GATC	4 cut(s)	129, 427, 978, 1121
BssT1I	CCWWGG	2 cut(s)	671, 718
Bst2UI	CCWGG	3 cut(s)	87, 403, 603
Bst4CI	ACNGT	4 cut(s)	256, 385, 529, 778
Bst6I	CTCTTC	2 cut(s)	572, 719
BstBAI	YACGTR	1 cut(s)	623
BstBI	TTCGAA	1 cut(s)	682
BstC8I	GCNNGC	2 cut(s)	36, 832
BstDEI	CTNAG	3 cut(s)	110, 431, 854
BstDSI	CCRYGG	1 cut(s)	525
BstENI	CCTNNNNNAGG	2 cut(s)	704, 767
BstF5I	GGATG	1 cut(s)	798
BstHHI	GCGC	2 cut(s)	227, 912
BstKTI	GATC	4 cut(s)	132, 430, 981, 1124
BstMAI	GTCTC	1 cut(s)	1136
BstMBI	GATC	4 cut(s)	129, 427, 978, 1121
BstMWI	GCNNNNNNNGC	5 cut(s)	222, 612, 909, 1052, 1243
BstNI	CCWGG	3 cut(s)	87, 403, 603
BstSCI	CCNGG	4 cut(s)	85, 401, 601, 1018
BstSLI	GKGCMC	4 cut(s)	8, 383, 628, 891
BstV1I	GCAGC	4 cut(s)	294, 604, 1030, 1042
BstV2I	GAAGAC	2 cut(s)	1043, 1170
BstXI	CCANNNNNNTGG	1 cut(s)	878
BsuRI	GGCC	4 cut(s)	90, 479, 810, 863
BtgI	CCRYGG	1 cut(s)	525
BtsCI	GGATG	1 cut(s)	798
BtsI	GCAGTG	1 cut(s)	396
BtsIMutI	CAGTG	1 cut(s)	396
BveI	ACCTGC	1 cut(s)	230
Cac8I	GCNNGC	2 cut(s)	36, 832
CfoI	GCGC	2 cut(s)	227, 912
Cfr10I	RCCGGY	1 cut(s)	726
Cfr13I	GGNCC	4 cut(s)	89, 499, 809, 959
Csp6I	GTAC	2 cut(s)	748, 760
CviAII	CATG	3 cut(s)	183, 356, 1241
CviQI	GTAC	2 cut(s)	748, 760
DdeI	CTNAG	3 cut(s)	110, 431, 854
DpnI	GATC	4 cut(s)	131, 429, 980, 1123
DpnII	GATC	4 cut(s)	129, 427, 978, 1121
EaeI	YGGCCR	2 cut(s)	477, 861
Eam1104I	CTCTTC	2 cut(s)	572, 719
EarI	CTCTTC	2 cut(s)	572, 719
Ecl136II	GAGCTC	1 cut(s)	792
Eco130I	CCWWGG	2 cut(s)	671, 718
Eco24I	GRGCYC	2 cut(s)	794, 1026
Eco47I	GGWCC	2 cut(s)	499, 959
Eco53kI	GAGCTC	1 cut(s)	792
Eco57I	CTGAAG	1 cut(s)	263
Eco72I	CACGTG	1 cut(s)	623
Eco88I	CYCGRG	1 cut(s)	890
EcoICRI	GAGCTC	1 cut(s)	792
EcoNI	CCTNNNNNAGG	2 cut(s)	704, 767
EcoO109I	RGGNCCY	2 cut(s)	89, 809
EcoRII	CCWGG	3 cut(s)	85, 401, 601
EcoT14I	CCWWGG	2 cut(s)	671, 718
EcoT38I	GRGCYC	2 cut(s)	794, 1026
ErhI	CCWWGG	2 cut(s)	671, 718
Esp3I	CGTCTC	1 cut(s)	1136
FaeI	CATG	3 cut(s)	186, 359, 1244
FaqI	GGGAC	3 cut(s)	218, 371, 1068
FatI	CATG	3 cut(s)	182, 355, 1240
FauI	CCCGC	1 cut(s)	896
FbaI	TGATCA	1 cut(s)	978
Fnu4HI	GCNGC	8 cut(s)	292, 308, 477, 593, 933, 1044, 1056, 1238
FokI	GGATG	1 cut(s)	785
FriOI	GRGCYC	2 cut(s)	794, 1026
Fsp4HI	GCNGC	8 cut(s)	292, 308, 477, 593, 933, 1044, 1056, 1238
FspBI	CTAG	5 cut(s)	390, 551, 690, 719, 917
FspI	TGCGCA	1 cut(s)	226
GlaI	GCGC	2 cut(s)	226, 911
GluI	GCNGC	8 cut(s)	292, 308, 477, 593, 933, 1044, 1056, 1238
GsuI	CTGGAG	2 cut(s)	471, 866
HaeIII	GGCC	4 cut(s)	90, 479, 810, 863
HapII	CCGG	3 cut(s)	505, 727, 1019
HhaI	GCGC	2 cut(s)	227, 912
Hin1II	CATG	3 cut(s)	186, 359, 1244
Hin6I	GCGC	2 cut(s)	225, 910
HinP1I	GCGC	2 cut(s)	225, 910
HincII	GTYRAC	2 cut(s)	252, 559
HindII	GTYRAC	2 cut(s)	252, 559
HindIII	AAGCTT	1 cut(s)	135
HinfI	GANTC	4 cut(s)	150, 264, 411, 991
HpaI	GTTAAC	1 cut(s)	252
HpaII	CCGG	3 cut(s)	505, 727, 1019
HphI	GGTGA	2 cut(s)	211, 628
Hpy166II	GTNNAC	2 cut(s)	252, 559
Hpy188I	TCNGA	6 cut(s)	160, 263, 855, 954, 1004, 1035
Hpy188III	TCNNGA	2 cut(s)	982, 995
Hpy8I	GTNNAC	2 cut(s)	252, 559
HpyAV	CCTTC	5 cut(s)	38, 130, 502, 1025, 1069
HpyCH4III	ACNGT	4 cut(s)	256, 385, 529, 778
HpyCH4IV	ACGT	4 cut(s)	145, 198, 622, 974
HpyCH4V	TGCA	4 cut(s)	38, 204, 359, 1116
HpyF10VI	GCNNNNNNNGC	5 cut(s)	222, 612, 909, 1052, 1243
HpyF3I	CTNAG	3 cut(s)	110, 431, 854
HpySE526I	ACGT	4 cut(s)	145, 198, 622, 974
Hsp92II	CATG	3 cut(s)	186, 359, 1244
HspAI	GCGC	2 cut(s)	225, 910
KpnI	GGTACC	1 cut(s)	763
Ksp22I	TGATCA	1 cut(s)	978
KspAI	GTTAAC	1 cut(s)	252
Kzo9I	GATC	4 cut(s)	129, 427, 978, 1121
LmnI	GCTCC	5 cut(s)	278, 620, 675, 797, 1029
Lsp1109I	GCAGC	4 cut(s)	294, 604, 1030, 1042
MaeI	CTAG	5 cut(s)	390, 551, 690, 719, 917
MaeII	ACGT	4 cut(s)	145, 198, 622, 974
MaeIII	GTNAC	1 cut(s)	866
MalI	GATC	4 cut(s)	131, 429, 980, 1123
MboI	GATC	4 cut(s)	129, 427, 978, 1121
MfeI	CAATTG	1 cut(s)	1169
MhlI	GDGCHC	6 cut(s)	8, 383, 628, 794, 891, 1026
MlsI	TGGCCA	1 cut(s)	863
MluCI	AATT	3 cut(s)	583, 1107, 1169
MluNI	TGGCCA	1 cut(s)	863
MlyI	GAGTC	1 cut(s)	273
MmeI	TCCRAC	4 cut(s)	183, 315, 390, 819
Mox20I	TGGCCA	1 cut(s)	863
MscI	TGGCCA	1 cut(s)	863
MseI	TTAA	5 cut(s)	251, 297, 546, 927, 1158
Msp20I	TGGCCA	1 cut(s)	863
MspA1I	CMGCKG	1 cut(s)	1043
MspI	CCGG	3 cut(s)	505, 727, 1019
MspR9I	CCNGG	4 cut(s)	87, 403, 603, 1020
MunI	CAATTG	1 cut(s)	1169
Mva1269I	GAATGC	1 cut(s)	678
MvaI	CCWGG	3 cut(s)	87, 403, 603
MwoI	GCNNNNNNNGC	5 cut(s)	222, 612, 909, 1052, 1243
NciI	CCSGG	1 cut(s)	1020
NdeII	GATC	4 cut(s)	129, 427, 978, 1121
NlaIII	CATG	3 cut(s)	186, 359, 1244
NsbI	TGCGCA	1 cut(s)	226
NspV	TTCGAA	1 cut(s)	682
PaqCI	CACCTGC	1 cut(s)	230
PctI	GAATGC	1 cut(s)	678
PfeI	GAWTC	3 cut(s)	150, 411, 991
Pfl23II	CGTACG	1 cut(s)	747
PkrI	GCNGC	8 cut(s)	293, 309, 478, 594, 934, 1045, 1057, 1239
PleI	GAGTC	1 cut(s)	272
PmaCI	CACGTG	1 cut(s)	623
PmlI	CACGTG	1 cut(s)	623
PpsI	GAGTC	1 cut(s)	272
Ppu21I	YACGTR	1 cut(s)	623
PshBI	ATTAAT	1 cut(s)	1158
PsiI	TTATAA	1 cut(s)	98
Psp124BI	GAGCTC	1 cut(s)	794
Psp6I	CCWGG	3 cut(s)	85, 401, 601
PspCI	CACGTG	1 cut(s)	623
PspGI	CCWGG	3 cut(s)	85, 401, 601
PspLI	CGTACG	1 cut(s)	747
PspPI	GGNCC	4 cut(s)	89, 499, 809, 959
PsrI	GAACNNNNNNTAC	2 cut(s)	1210, 1242
PvuII	CAGCTG	1 cut(s)	1043
RsaI	GTAC	2 cut(s)	749, 761
RsaNI	GTAC	2 cut(s)	748, 760
SacI	GAGCTC	1 cut(s)	794
SaqAI	TTAA	5 cut(s)	251, 297, 546, 927, 1158
SatI	GCNGC	8 cut(s)	292, 308, 477, 593, 933, 1044, 1056, 1238
Sau3AI	GATC	4 cut(s)	129, 427, 978, 1121
Sau96I	GGNCC	4 cut(s)	89, 499, 809, 959
SchI	GAGTC	1 cut(s)	273
ScrFI	CCNGG	4 cut(s)	87, 403, 603, 1020
SduI	GDGCHC	6 cut(s)	8, 383, 628, 794, 891, 1026
SfuI	TTCGAA	1 cut(s)	682
SinI	GGWCC	2 cut(s)	499, 959
Sse9I	AATT	3 cut(s)	583, 1107, 1169
SsiI	CCGC	5 cut(s)	291, 476, 903, 932, 1238
SspI	AATATT	1 cut(s)	1192
SspMI	CTAG	5 cut(s)	390, 551, 690, 719, 917
SstI	GAGCTC	1 cut(s)	794
StyD4I	CCNGG	4 cut(s)	85, 401, 601, 1018
StyI	CCWWGG	2 cut(s)	671, 718
TaaI	ACNGT	4 cut(s)	256, 385, 529, 778
TaiI	ACGT	4 cut(s)	148, 201, 625, 977
TaqI	TCGA	1 cut(s)	682
TasI	AATT	3 cut(s)	583, 1107, 1169
TauI	GCSGC	4 cut(s)	294, 479, 935, 1240
TfiI	GAWTC	3 cut(s)	150, 411, 991
Tru1I	TTAA	5 cut(s)	251, 297, 546, 927, 1158
Tru9I	TTAA	5 cut(s)	251, 297, 546, 927, 1158
TscAI	CASTG	1 cut(s)	403
TseI	GCWGC	4 cut(s)	307, 592, 1043, 1055
TspDTI	ATGAA	3 cut(s)	313, 480, 1176
TspGWI	ACGGA	1 cut(s)	1105
TspRI	CASTG	1 cut(s)	403
VpaK11BI	GGWCC	2 cut(s)	499, 959
VspI	ATTAAT	1 cut(s)	1158
XagI	CCTNNNNNAGG	2 cut(s)	704, 767
XmaJI	CCTAGG	1 cut(s)	718
XspI	CTAG	5 cut(s)	390, 551, 690, 719, 917

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.