Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004065

Physical Location & Seq

Genomic Coordinates Forward (+)

11242750 .. 11244076

Gene Structure 1327 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ22946

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGGGTCAGTTCCACCCCAAGTGTTCTTCCTGGAAGTTGATGTACTCTTCCTCAACAACAACAATTTCATTGAGCAGATTCCTGATGCTCTTGGCTCCTCACCAGCACATTATCTCACTTTTGCCAACAACAAGTTCTGGGGTCCAATCCCAAATAGCATTGGCAAAGCATCAAAAACGCTTTATGAGGTCCTCTTCCTCAACAACCAACTCTCAGTCGTCAGACATGATTCGTAGGTGTTTGCCATGGGAAATCGGCAAACTTAACCAGGCAACCTTGTTCGATGTGAGCACCAACTACTTAACAGGCCCAATTCCTCATTCCTTTGCTTGCTTGGCCAAGATGGAGATTCTGGTCTTGGCTAACAACCAGTTCTATGGAACAGTGCCTGAGTTGGTATGCAAGCTGCCCGGCTTGAGGAACTTGTCGTTAGCAAACAACTACTTTACCCAAGTCGGACCGGAGTGCAGAAAACTGATCAAGAAAGGGTTTCTCGACGTCAAGAACAATTGTATCTTGGACCTTCCAGATCAAAGATCAAAGAGTGAATGTGGTTGGTTCTTCTCTAAGGCCAGACACTGTCCCAACGAGCGGTCCATGCTTTACATTCCTTGTCAAACGCACTATTCAAATGAGAAGAAGCCTGAACATCGAGGACAAGCTTCTGCCCCATTAAGCTATGGTACTCTTAAACCTCATAATCCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2

Protein Analysis

235

Amino Acids

26.48

Weight (kDa)

9.54

Isoelectric Point (pI)

52.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004065)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49750 AT3G19320
fragaria_vesca	FvH4_2g05530
malus_domestica	MD00G1014300.v1.1 MD05G1086700.v1.1
prunus_persica	Prupe.8G131400_v2.0.a1 Prupe.8G131500_v2.0.a1
pyrus_communis	pycom05g08610 pycom10g08130
rosa_chinensis	RchiOBHm_Chr4g0387761 RchiOBHm_Chr6g0255781 RchiOBHm_Chr6g0255841
rosa_laevigata	RLG00000014812 RLG00000014813
rosa_multiflora	Rmu_sc0001163.1_g000027 Rmu_sc0001163.1_g000029 Rmu_sc0004935.1_g000023
rosa_roxburghii	Rroxscaffold_7G00209620 Rroxscaffold_7G00209650
rosa_rugosa	Rorug05G0561500 Rorug05G0561700
rosa_samantha	Rh1AG424200 Rh4BG013200 Rh6AG079500 Rh6AG079800 Rh6BG072600 Rh6BG072700 Rh6CG070700 Rh6CG070800 Rh6DG068000 Rh6DG068100
rosa_wichuraiana	Rw6G006850 Rw6G006880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	501
AccBSI	CCGCTC	1 cut(s)	592
AciI	CCGC	1 cut(s)	592
AcoI	YGGCCR	1 cut(s)	336
AcyI	GRCGYC	1 cut(s)	498
AfaI	GTAC	2 cut(s)	44, 685
AfiI	CCNNNNNNNGG	2 cut(s)	417, 591
AgsI	TTSAA	1 cut(s)	630
AjnI	CCWGG	2 cut(s)	29, 267
AjuI	GAANNNNNNNTTGG	4 cut(s)	118, 150, 304, 336
AluBI	AGCT	3 cut(s)	406, 662, 678
AluI	AGCT	3 cut(s)	406, 662, 678
Alw21I	GWGCWC	1 cut(s)	293
AlwNI	CAGNNNCTG	2 cut(s)	389, 579
AoxI	GGCC	3 cut(s)	307, 336, 570
ApeKI	GCWGC	1 cut(s)	406
AspS9I	GGNCC	6 cut(s)	142, 189, 308, 458, 520, 594
AsuC2I	CCSGG	1 cut(s)	411
AsuHPI	GGTGA	1 cut(s)	92
AvaII	GGWCC	5 cut(s)	142, 189, 458, 520, 594
BaeI	ACNNNNGTAYC	2 cut(s)	496, 529
BalI	TGGCCA	1 cut(s)	338
BarI	GAAGNNNNNNTAC	2 cut(s)	26, 58
Bbv12I	GWGCWC	1 cut(s)	293
BbvI	GCAGC	1 cut(s)	393
BccI	CCATC	1 cut(s)	337
BciT130I	CCWGG	2 cut(s)	31, 269
BclI	TGATCA	1 cut(s)	477
BcnI	CCSGG	1 cut(s)	411
BisI	GCNGC	1 cut(s)	407
BlsI	GCNGC	1 cut(s)	408
Bme1390I	CCNGG	3 cut(s)	31, 269, 411
Bme18I	GGWCC	5 cut(s)	142, 189, 458, 520, 594
BmgT120I	GGNCC	6 cut(s)	142, 189, 308, 458, 520, 594
BmiI	GGNNCC	2 cut(s)	96, 143
BmrFI	CCNGG	3 cut(s)	31, 269, 411
BmsI	GCATC	2 cut(s)	75, 178
BpuEI	CTTGAG	1 cut(s)	436
BpuMI	CCSGG	1 cut(s)	411
BsaHI	GRCGYC	1 cut(s)	498
BsaJI	CCNNGG	1 cut(s)	245
BsaWI	WCCGGW	1 cut(s)	460
Bsc4I	CCNNNNNNNGG	2 cut(s)	417, 591
Bse1I	ACTGG	1 cut(s)	370
BseBI	CCWGG	2 cut(s)	31, 269
BseDI	CCNNGG	1 cut(s)	245
BseLI	CCNNNNNNNGG	2 cut(s)	417, 591
BseMII	CTCAG	2 cut(s)	227, 381
BseNI	ACTGG	1 cut(s)	370
BseRI	GAGGAG	1 cut(s)	87
BseXI	GCAGC	1 cut(s)	393
BsgI	GTGCAG	1 cut(s)	487
BshFI	GGCC	3 cut(s)	309, 338, 572
BsiHKAI	GWGCWC	1 cut(s)	293
BsiSI	CCGG	2 cut(s)	411, 461
BslFI	GGGAC	1 cut(s)	567
BslI	CCNNNNNNNGG	2 cut(s)	417, 591
BsmFI	GGGAC	1 cut(s)	567
BsnI	GGCC	3 cut(s)	309, 338, 572
Bsp1286I	GDGCHC	1 cut(s)	293
Bsp143I	GATC	3 cut(s)	477, 529, 536
Bsp19I	CCATGG	1 cut(s)	245
BspACI	CCGC	1 cut(s)	592
BspANI	GGCC	3 cut(s)	309, 338, 572
BspCNI	CTCAG	2 cut(s)	226, 382
BspLI	GGNNCC	2 cut(s)	96, 143
BsrBI	CCGCTC	1 cut(s)	592
BsrI	ACTGG	1 cut(s)	370
BssECI	CCNNGG	1 cut(s)	245
BssMI	GATC	3 cut(s)	477, 529, 536
BssNI	GRCGYC	1 cut(s)	498
BssT1I	CCWWGG	1 cut(s)	245
Bst2UI	CCWGG	2 cut(s)	31, 269
Bst4CI	ACNGT	2 cut(s)	385, 581
Bst6I	CTCTTC	2 cut(s)	52, 199
BstACI	GRCGYC	1 cut(s)	498
BstC8I	GCNNGC	2 cut(s)	331, 404
BstDEI	CTNAG	3 cut(s)	213, 390, 567
BstDSI	CCRYGG	1 cut(s)	245
BstKTI	GATC	3 cut(s)	480, 532, 539
BstMBI	GATC	3 cut(s)	477, 529, 536
BstMWI	GCNNNNNNNGC	2 cut(s)	335, 598
BstNI	CCWGG	2 cut(s)	31, 269
BstSCI	CCNGG	3 cut(s)	29, 267, 409
BstV1I	GCAGC	1 cut(s)	393
BstXI	CCANNNNNNTGG	1 cut(s)	377
BsuRI	GGCC	3 cut(s)	309, 338, 572
BtgI	CCRYGG	1 cut(s)	245
BtsIMutI	CAGTG	2 cut(s)	390, 577
Cac8I	GCNNGC	2 cut(s)	331, 404
CaiI	CAGNNNCTG	2 cut(s)	389, 579
Cfr13I	GGNCC	6 cut(s)	142, 189, 308, 458, 520, 594
CpoI	CGGWCCG	1 cut(s)	458
Csp6I	GTAC	2 cut(s)	43, 684
CspI	CGGWCCG	1 cut(s)	458
CviAII	CATG	3 cut(s)	226, 246, 598
CviQI	GTAC	2 cut(s)	43, 684
DdeI	CTNAG	3 cut(s)	213, 390, 567
DpnI	GATC	3 cut(s)	479, 531, 538
DpnII	GATC	3 cut(s)	477, 529, 536
EaeI	YGGCCR	1 cut(s)	336
Eam1104I	CTCTTC	2 cut(s)	52, 199
EarI	CTCTTC	2 cut(s)	52, 199
Eco130I	CCWWGG	1 cut(s)	245
Eco47I	GGWCC	5 cut(s)	142, 189, 458, 520, 594
EcoO109I	RGGNCCY	1 cut(s)	189
EcoRII	CCWGG	2 cut(s)	29, 267
EcoT14I	CCWWGG	1 cut(s)	245
ErhI	CCWWGG	1 cut(s)	245
FaeI	CATG	3 cut(s)	229, 249, 601
FaiI	YATR	8 cut(s)	185, 227, 247, 378, 400, 599, 681, 699
FaqI	GGGAC	1 cut(s)	567
FatI	CATG	3 cut(s)	225, 245, 597
FbaI	TGATCA	1 cut(s)	477
Fnu4HI	GCNGC	1 cut(s)	407
Fsp4HI	GCNGC	1 cut(s)	407
GluI	GCNGC	1 cut(s)	407
HaeIII	GGCC	3 cut(s)	309, 338, 572
HapII	CCGG	2 cut(s)	411, 461
Hin1I	GRCGYC	1 cut(s)	498
Hin1II	CATG	3 cut(s)	229, 249, 601
HindIII	AAGCTT	1 cut(s)	660
HinfI	GANTC	3 cut(s)	78, 229, 349
HpaII	CCGG	2 cut(s)	411, 461
HphI	GGTGA	1 cut(s)	92
Hpy188I	TCNGA	2 cut(s)	223, 458
Hpy188III	TCNNGA	5 cut(s)	82, 481, 494, 502, 527
Hpy99I	CGWCG	1 cut(s)	500
HpyAV	CCTTC	1 cut(s)	533
HpyCH4III	ACNGT	2 cut(s)	385, 581
HpyCH4IV	ACGT	1 cut(s)	498
HpyCH4V	TGCA	2 cut(s)	402, 468
HpyF10VI	GCNNNNNNNGC	2 cut(s)	335, 598
HpyF3I	CTNAG	3 cut(s)	213, 390, 567
HpySE526I	ACGT	1 cut(s)	498
Hsp92I	GRCGYC	1 cut(s)	498
Hsp92II	CATG	3 cut(s)	229, 249, 601
Ksp22I	TGATCA	1 cut(s)	477
Kzo9I	GATC	3 cut(s)	477, 529, 536
LmnI	GCTCC	1 cut(s)	100
Lsp1109I	GCAGC	1 cut(s)	393
LweI	GCATC	2 cut(s)	75, 178
MaeII	ACGT	1 cut(s)	498
MalI	GATC	3 cut(s)	479, 531, 538
MbiI	CCGCTC	1 cut(s)	592
MboI	GATC	3 cut(s)	477, 529, 536
MboII	GAAGA	5 cut(s)	18, 39, 186, 553, 649
MfeI	CAATTG	1 cut(s)	508
MhlI	GDGCHC	1 cut(s)	293
MlsI	TGGCCA	1 cut(s)	338
MluCI	AATT	3 cut(s)	63, 312, 508
MluNI	TGGCCA	1 cut(s)	338
MmeI	TCCRAC	1 cut(s)	436
MnlI	CCTC	9 cut(s)	61, 108, 180, 202, 208, 327, 411, 647, 705
Mox20I	TGGCCA	1 cut(s)	338
MscI	TGGCCA	1 cut(s)	338
MseI	TTAA	4 cut(s)	264, 302, 674, 690
Msp20I	TGGCCA	1 cut(s)	338
MspI	CCGG	2 cut(s)	411, 461
MspR9I	CCNGG	3 cut(s)	31, 269, 411
MunI	CAATTG	1 cut(s)	508
MvaI	CCWGG	2 cut(s)	31, 269
MwoI	GCNNNNNNNGC	2 cut(s)	335, 598
NciI	CCSGG	1 cut(s)	411
NcoI	CCATGG	1 cut(s)	245
NdeII	GATC	3 cut(s)	477, 529, 536
NlaIII	CATG	3 cut(s)	229, 249, 601
NlaIV	GGNNCC	2 cut(s)	96, 143
PfeI	GAWTC	3 cut(s)	78, 229, 349
PflFI	GACNNNGTC	1 cut(s)	579
PfoI	TCCNGGA	1 cut(s)	29
PkrI	GCNGC	1 cut(s)	408
PpuMI	RGGWCCY	1 cut(s)	189
Psp5II	RGGWCCY	1 cut(s)	189
Psp6I	CCWGG	2 cut(s)	29, 267
PspGI	CCWGG	2 cut(s)	29, 267
PspN4I	GGNNCC	2 cut(s)	96, 143
PspPI	GGNCC	6 cut(s)	142, 189, 308, 458, 520, 594
PspPPI	RGGWCCY	1 cut(s)	189
PstNI	CAGNNNCTG	2 cut(s)	389, 579
PsyI	GACNNNGTC	1 cut(s)	579
RsaI	GTAC	2 cut(s)	44, 685
RsaNI	GTAC	2 cut(s)	43, 684
Rsr2I	CGGWCCG	1 cut(s)	458
RsrII	CGGWCCG	1 cut(s)	458
SaqAI	TTAA	4 cut(s)	264, 302, 674, 690
SatI	GCNGC	1 cut(s)	407
Sau3AI	GATC	3 cut(s)	477, 529, 536
Sau96I	GGNCC	6 cut(s)	142, 189, 308, 458, 520, 594
ScrFI	CCNGG	3 cut(s)	31, 269, 411
SduI	GDGCHC	1 cut(s)	293
SetI	ASST	9 cut(s)	191, 239, 278, 408, 501, 525, 664, 680, 697
SfaNI	GCATC	2 cut(s)	75, 178
SinI	GGWCC	5 cut(s)	142, 189, 458, 520, 594
SmlI	CTYRAG	1 cut(s)	415
SmoI	CTYRAG	1 cut(s)	415
Sse9I	AATT	3 cut(s)	63, 312, 508
SsiI	CCGC	1 cut(s)	592
StyD4I	CCNGG	3 cut(s)	29, 267, 409
StyI	CCWWGG	1 cut(s)	245
TaaI	ACNGT	2 cut(s)	385, 581
TaiI	ACGT	1 cut(s)	501
TaqI	TCGA	3 cut(s)	282, 495, 652
TasI	AATT	3 cut(s)	63, 312, 508
TatI	WGTACW	1 cut(s)	42
TfiI	GAWTC	3 cut(s)	78, 229, 349
Tru1I	TTAA	4 cut(s)	264, 302, 674, 690
Tru9I	TTAA	4 cut(s)	264, 302, 674, 690
TscAI	CASTG	2 cut(s)	390, 584
TseI	GCWGC	1 cut(s)	406
TspDTI	ATGAA	1 cut(s)	57
TspGWI	ACGGA	1 cut(s)	693
TspRI	CASTG	2 cut(s)	390, 584
Tth111I	GACNNNGTC	1 cut(s)	579
VpaK11BI	GGWCC	5 cut(s)	142, 189, 458, 520, 594
ZraI	GACGTC	1 cut(s)	499

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.