Rw6G006880

At4g06744-like

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
Physical Location & Seq
Forward (+)
10993480 .. 10995769
2290 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G006880.1

Sequence Viewer

Length: 1521 bp
ATGGGTACCAACAATTCTTTCTTTGCTTCAGTTTTGCTTTCACTACTTCTGCTACATTTGTGTTTGCAACATGATGTAGTTGAAGGTGCTGAAAGAGAAGCCTTGGAAATAATCATTGGTGGTGGCGGCAGCTACAGCCCTCCTCCTGCTCCCTCCCCCGAATACGAAGAATGCCCTCCCCCTCCGCCTCCTCCTTGCCCGCCGCCACCATTCCCGCCACCGCCACCTCCATCACCACCGCCGCCGTCACCTCCTCCACCACCATCACCACCACCGCCGTCACCTCCTCCACCACCATCACCACCACCGCCGTCACCTCCTCCACCACCATCGCCGCCACCTCCACCGCCACCATCACCTCCACCACGACCGCGACCGCGACCGCGACCACCACCCCCTCCGAACACCAGACTTGCAAATGCCCTCCGAGTAATTCGTAAGTTCAAAAAGCTAATCGTCGAAGACCCATACAAAATCACAAAAACATGGAACGGCAATGATCCTTGCAAATTCAAGGGCTTCACCTGTGCAATGTTCCCTGACGATAAACAAATGGCAGTCGCCGGAGTTGACTTCAATGGCAAACGGTTGGCCGGTAATAAAACAGCTAAGCAACCCCTTCCCCTTGACGGTTTCCTAGACCAGTTACCAGAGTTGGTGTTTTTCCATGCCAACTCCAACAATTTCACAGGCTCAGTCCCGAAAGACACATCCAAAATTAAATACTTCTACGAGCTTGACCTCAGCAACAACAAGCTTGATGGGGGTTTCCCACATGAAGTTCTAAGTGCCAAAAATTTGACATTCTTAGATCTCCGGTTCAACAATTTCCATGGGTCAGTTCCACCCGAAGTGTTCATCCTGGACGTTGATGTACTCTTCCTCAACAACAACCATTTCATTGAGCAGATTCCTGATGCTCTTGGCTCCTCACCAGCACATTATCTCACTTTTGCCAACAACAAGTTCTGGGGTCCAATCCCAAATAGCATTGGCAAAGCATCAAAAACGCTTTATGAGGTCCTCTTCCTCAACAACCAACTCTCAGGGTGTTTGCCATGGGAAATCGGCAAACTTAACCAGGCAACCTTGTTCGATGTGAGCACCAACTACTTAACAGGCCCAATACCTCATTCCTTTGCTTGCTTGGCCAAGATGGAGATTCTGGTCTTGGCCAACAACCAGTTCTATGGAACAGTGCCTGAGTTGGTATGCAAGCTGCCCGTCTTGAGGAACTTGTCGTTAGCAAACAACTATTTTACCCAAGTCGGACCGGAGTGCAGAAAACTGATCAATAAAGGGTTTCTCAACGTCAAGAACAATTGTATCTTGGACCTTAAAGATCAAAGATCAAAGAGTGATTGTGCTTGGTTCTTCTCTAAGGCCAGACACTGTCCCAACGAGCGGTCCATGCTTTACATTCCTTGTCAAACGCACTATTCAAATGAGAGGAAGCCTGAACATCAAGGACAAGCTTCTGCCCCATTAAGTTATGGTACTCTTAAACCGCATAATCCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

506

Amino Acids

55.69

Weight (kDa)

8.57

Isoelectric Point (pI)

62.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 5
AccB1I GGYRCC 1 cut(s) 5
AccBSI CCGCTC 1 cut(s) 1405
AccII CGCG 3 cut(s) 373, 379, 385
AclWI GGATC 1 cut(s) 494
AcoI YGGCCR 3 cut(s) 591, 1149, 1173
AcsI RAATTY 2 cut(s) 509, 796
AcuI CTGAAG 1 cut(s) 12
AfaI GTAC 3 cut(s) 7, 876, 1498
AfiI CCNNNNNNNGG 3 cut(s) 629, 1230, 1404
AgsI TTSAA 6 cut(s) 83, 445, 514, 577, 823, 1443
AjnI CCWGG 2 cut(s) 861, 1080
AjuI GAANNNNNNNTTGG 9 cut(s) 34, 99, 131, 950, 982, 1117, 1149, 1169, 1201
AluBI AGCT 7 cut(s) 132, 451, 608, 736, 757, 1219, 1475
AluI AGCT 7 cut(s) 132, 451, 608, 736, 757, 1219, 1475
Alw21I GWGCWC 1 cut(s) 1106
AlwI GGATC 1 cut(s) 494
AlwNI CAGNNNCTG 2 cut(s) 1202, 1392
AoxI GGCC 5 cut(s) 591, 1120, 1149, 1173, 1383
ApeKI GCWGC 2 cut(s) 129, 1219
ApoI RAATTY 2 cut(s) 509, 796
Asp718I GGTACC 1 cut(s) 5
AspS9I GGNCC 6 cut(s) 974, 1021, 1121, 1271, 1333, 1407
AsuHPI GGTGA 9 cut(s) 225, 240, 258, 273, 291, 306, 348, 514, 924
AvaII GGWCC 5 cut(s) 974, 1021, 1271, 1333, 1407
BaeI ACNNNNGTAYC 2 cut(s) 1309, 1342
BalI TGGCCA 2 cut(s) 1151, 1175
BanI GGYRCC 1 cut(s) 5
BbsI GAAGAC 1 cut(s) 468
Bbv12I GWGCWC 1 cut(s) 1106
BbvCI CCTCAGC 1 cut(s) 743
BbvI GCAGC 2 cut(s) 141, 1206
BccI CCATC 7 cut(s) 238, 271, 304, 337, 361, 755, 1150
BceAI ACGGC 4 cut(s) 229, 262, 295, 508
BciT130I CCWGG 2 cut(s) 863, 1082
BclI TGATCA 1 cut(s) 1290
BfaI CTAG 1 cut(s) 638
BfmI CTRYAG 1 cut(s) 133
BglII AGATCT 1 cut(s) 811
BisI GCNGC 6 cut(s) 127, 130, 203, 242, 335, 1220
BlpI GCTNAGC 1 cut(s) 609
BlsI GCNGC 6 cut(s) 128, 131, 204, 243, 336, 1221
Bme1390I CCNGG 2 cut(s) 863, 1082
Bme18I GGWCC 5 cut(s) 974, 1021, 1271, 1333, 1407
BmgT120I GGNCC 6 cut(s) 974, 1021, 1121, 1271, 1333, 1407
BmiI GGNNCC 3 cut(s) 7, 928, 975
BmrFI CCNGG 2 cut(s) 863, 1082
BmsI GCATC 2 cut(s) 907, 1010
BpiI GAAGAC 1 cut(s) 468
Bpu10I CCTNAGC 1 cut(s) 743
Bpu1102I GCTNAGC 1 cut(s) 609
BpuEI CTTGAG 1 cut(s) 1249
BsaJI CCNNGG 3 cut(s) 102, 832, 1058
BsaWI WCCGGW 2 cut(s) 816, 1273
Bsc4I CCNNNNNNNGG 3 cut(s) 629, 1230, 1404
Bse118I RCCGGY 1 cut(s) 593
Bse1I ACTGG 2 cut(s) 643, 1183
Bse3DI GCAATG 2 cut(s) 502, 537
BseBI CCWGG 2 cut(s) 863, 1082
BseDI CCNNGG 3 cut(s) 102, 832, 1058
BseGI GGATG 2 cut(s) 710, 858
BseLI CCNNNNNNNGG 3 cut(s) 629, 1230, 1404
BseMI GCAATG 2 cut(s) 502, 537
BseMII CTCAG 4 cut(s) 708, 757, 1059, 1194
BseNI ACTGG 2 cut(s) 643, 1183
BseRI GAGGAG 6 cut(s) 132, 180, 243, 276, 309, 919
BseXI GCAGC 2 cut(s) 141, 1206
BsgI GTGCAG 1 cut(s) 1300
Bsh1236I CGCG 3 cut(s) 373, 379, 385
Bsh1285I CGRYCG 3 cut(s) 371, 377, 383
BshFI GGCC 5 cut(s) 593, 1122, 1151, 1175, 1385
BshNI GGYRCC 1 cut(s) 5
BsiEI CGRYCG 3 cut(s) 371, 377, 383
BsiHKAI GWGCWC 1 cut(s) 1106
BsiSI CCGG 4 cut(s) 564, 594, 817, 1274
BslFI GGGAC 2 cut(s) 683, 1380
BslI CCNNNNNNNGG 3 cut(s) 629, 1230, 1404
BsmFI GGGAC 2 cut(s) 683, 1380
BsmI GAATGC 1 cut(s) 176
BsnI GGCC 5 cut(s) 593, 1122, 1151, 1175, 1385
Bsp1286I GDGCHC 1 cut(s) 1106
Bsp143I GATC 5 cut(s) 499, 811, 1290, 1342, 1349
Bsp1720I GCTNAGC 1 cut(s) 609
Bsp19I CCATGG 2 cut(s) 832, 1058
BspANI GGCC 5 cut(s) 593, 1122, 1151, 1175, 1385
BspCNI CTCAG 4 cut(s) 707, 756, 1058, 1195
BspFNI CGCG 3 cut(s) 373, 379, 385
BspLI GGNNCC 3 cut(s) 7, 928, 975
BspPI GGATC 1 cut(s) 494
BspT107I GGYRCC 1 cut(s) 5
BsrBI CCGCTC 1 cut(s) 1405
BsrDI GCAATG 2 cut(s) 502, 537
BsrFI RCCGGY 1 cut(s) 593
BsrI ACTGG 2 cut(s) 643, 1183
BssAI RCCGGY 1 cut(s) 593
BssECI CCNNGG 3 cut(s) 102, 832, 1058
BssMI GATC 5 cut(s) 499, 811, 1290, 1342, 1349
BssT1I CCWWGG 3 cut(s) 102, 832, 1058
Bst2UI CCWGG 2 cut(s) 863, 1082
Bst4CI ACNGT 4 cut(s) 588, 632, 1198, 1394
Bst6I CTCTTC 2 cut(s) 884, 1031
BstC8I GCNNGC 3 cut(s) 200, 1144, 1217
BstDEI CTNAG 8 cut(s) 609, 694, 743, 785, 808, 1045, 1203, 1380
BstDSI CCRYGG 2 cut(s) 832, 1058
BstF5I GGATG 2 cut(s) 710, 858
BstFNI CGCG 3 cut(s) 373, 379, 385
BstKTI GATC 5 cut(s) 502, 814, 1293, 1345, 1352
BstMBI GATC 5 cut(s) 499, 811, 1290, 1342, 1349
BstMCI CGRYCG 3 cut(s) 371, 377, 383
BstMWI GCNNNNNNNGC 3 cut(s) 135, 1148, 1411
BstNI CCWGG 2 cut(s) 863, 1082
BstSCI CCNGG 2 cut(s) 861, 1080
BstSFI CTRYAG 1 cut(s) 133
BstUI CGCG 3 cut(s) 373, 379, 385
BstV1I GCAGC 2 cut(s) 141, 1206
BstV2I GAAGAC 1 cut(s) 468
BstX2I RGATCY 1 cut(s) 811
BstXI CCANNNNNNTGG 1 cut(s) 1190
BstYI RGATCY 1 cut(s) 811
BsuRI GGCC 5 cut(s) 593, 1122, 1151, 1175, 1385
BtgI CCRYGG 2 cut(s) 832, 1058
BtgZI GCGATG 1 cut(s) 315
BtsCI GGATG 2 cut(s) 710, 858
BtsIMutI CAGTG 2 cut(s) 1203, 1390
Cac8I GCNNGC 3 cut(s) 200, 1144, 1217
CaiI CAGNNNCTG 2 cut(s) 1202, 1392
Cfr10I RCCGGY 1 cut(s) 593
Cfr13I GGNCC 6 cut(s) 974, 1021, 1121, 1271, 1333, 1407
CpoI CGGWCCG 1 cut(s) 1271
Csp6I GTAC 3 cut(s) 6, 875, 1497
CspI CGGWCCG 1 cut(s) 1271
CviAII CATG 7 cut(s) 71, 486, 668, 776, 833, 1059, 1411
CviQI GTAC 3 cut(s) 6, 875, 1497
DdeI CTNAG 8 cut(s) 609, 694, 743, 785, 808, 1045, 1203, 1380
DpnI GATC 5 cut(s) 501, 813, 1292, 1344, 1351
DpnII GATC 5 cut(s) 499, 811, 1290, 1342, 1349
EaeI YGGCCR 3 cut(s) 591, 1149, 1173
Eam1104I CTCTTC 2 cut(s) 884, 1031
EarI CTCTTC 2 cut(s) 884, 1031
EciI GGCGGA 1 cut(s) 174
Eco130I CCWWGG 3 cut(s) 102, 832, 1058
Eco47I GGWCC 5 cut(s) 974, 1021, 1271, 1333, 1407
Eco57I CTGAAG 1 cut(s) 12
EcoO109I RGGNCCY 1 cut(s) 1021
EcoRII CCWGG 2 cut(s) 861, 1080
EcoT14I CCWWGG 3 cut(s) 102, 832, 1058
ErhI CCWWGG 3 cut(s) 102, 832, 1058
FaeI CATG 7 cut(s) 74, 489, 671, 779, 836, 1062, 1414
FaqI GGGAC 2 cut(s) 683, 1380
FatI CATG 7 cut(s) 70, 485, 667, 775, 832, 1058, 1410
FauI CCCGC 2 cut(s) 207, 222
FbaI TGATCA 1 cut(s) 1290
Fnu4HI GCNGC 6 cut(s) 127, 130, 203, 242, 335, 1220
FokI GGATG 2 cut(s) 697, 845
Fsp4HI GCNGC 6 cut(s) 127, 130, 203, 242, 335, 1220
FspBI CTAG 1 cut(s) 638
GluI GCNGC 6 cut(s) 127, 130, 203, 242, 335, 1220
HaeIII GGCC 5 cut(s) 593, 1122, 1151, 1175, 1385
HapII CCGG 4 cut(s) 564, 594, 817, 1274
Hin1II CATG 7 cut(s) 74, 489, 671, 779, 836, 1062, 1414
HincII GTYRAC 1 cut(s) 571
HindII GTYRAC 1 cut(s) 571
HindIII AAGCTT 2 cut(s) 755, 1473
HinfI GANTC 2 cut(s) 910, 1162
HpaII CCGG 4 cut(s) 564, 594, 817, 1274
HphI GGTGA 9 cut(s) 225, 240, 258, 273, 291, 306, 348, 514, 924
Hpy166II GTNNAC 1 cut(s) 571
Hpy188I TCNGA 3 cut(s) 402, 428, 1271
Hpy188III TCNNGA 4 cut(s) 700, 914, 1228, 1315
Hpy8I GTNNAC 1 cut(s) 571
Hpy99I CGWCG 1 cut(s) 461
HpyAV CCTTC 2 cut(s) 77, 629
HpyCH4III ACNGT 4 cut(s) 588, 632, 1198, 1394
HpyCH4IV ACGT 2 cut(s) 867, 1311
HpyCH4V TGCA 6 cut(s) 67, 416, 507, 530, 1215, 1281
HpyF10VI GCNNNNNNNGC 3 cut(s) 135, 1148, 1411
HpyF3I CTNAG 8 cut(s) 609, 694, 743, 785, 808, 1045, 1203, 1380
HpySE526I ACGT 2 cut(s) 867, 1311
Hsp92II CATG 7 cut(s) 74, 489, 671, 779, 836, 1062, 1414
KpnI GGTACC 1 cut(s) 9
Ksp22I TGATCA 1 cut(s) 1290
Kzo9I GATC 5 cut(s) 499, 811, 1290, 1342, 1349
LmnI GCTCC 2 cut(s) 154, 932
Lsp1109I GCAGC 2 cut(s) 141, 1206
LweI GCATC 2 cut(s) 907, 1010
MaeI CTAG 1 cut(s) 638
MaeII ACGT 2 cut(s) 867, 1311
MaeIII GTNAC 4 cut(s) 246, 279, 312, 645
MalI GATC 5 cut(s) 501, 813, 1292, 1344, 1351
MbiI CCGCTC 1 cut(s) 1405
MboI GATC 5 cut(s) 499, 811, 1290, 1342, 1349
MboII GAAGA 5 cut(s) 179, 473, 871, 1018, 1366
MfeI CAATTG 1 cut(s) 1321
MflI RGATCY 1 cut(s) 811
MhlI GDGCHC 1 cut(s) 1106
MlsI TGGCCA 2 cut(s) 1151, 1175
MluCI AATT 8 cut(s) 13, 432, 509, 682, 717, 796, 826, 1321
MluNI TGGCCA 2 cut(s) 1151, 1175
MmeI TCCRAC 2 cut(s) 702, 1249
Mox20I TGGCCA 2 cut(s) 1151, 1175
MscI TGGCCA 2 cut(s) 1151, 1175
MseI TTAA 6 cut(s) 720, 1077, 1115, 1338, 1487, 1503
Msp20I TGGCCA 2 cut(s) 1151, 1175
MspI CCGG 4 cut(s) 564, 594, 817, 1274
MspR9I CCNGG 2 cut(s) 863, 1082
MunI CAATTG 1 cut(s) 1321
Mva1269I GAATGC 1 cut(s) 176
MvaI CCWGG 2 cut(s) 863, 1082
MvnI CGCG 3 cut(s) 373, 379, 385
MwoI GCNNNNNNNGC 3 cut(s) 135, 1148, 1411
NcoI CCATGG 2 cut(s) 832, 1058
NdeII GATC 5 cut(s) 499, 811, 1290, 1342, 1349
NlaIII CATG 7 cut(s) 74, 489, 671, 779, 836, 1062, 1414
NlaIV GGNNCC 3 cut(s) 7, 928, 975
NmuCI GTSAC 3 cut(s) 246, 279, 312
PctI GAATGC 1 cut(s) 176
PfeI GAWTC 2 cut(s) 910, 1162
PflFI GACNNNGTC 1 cut(s) 1392
PfoI TCCNGGA 1 cut(s) 861
PkrI GCNGC 6 cut(s) 128, 131, 204, 243, 336, 1221
PpuMI RGGWCCY 1 cut(s) 1021
Psp5II RGGWCCY 1 cut(s) 1021
Psp6I CCWGG 2 cut(s) 861, 1080
PspGI CCWGG 2 cut(s) 861, 1080
PspN4I GGNNCC 3 cut(s) 7, 928, 975
PspPI GGNCC 6 cut(s) 974, 1021, 1121, 1271, 1333, 1407
PspPPI RGGWCCY 1 cut(s) 1021
PstNI CAGNNNCTG 2 cut(s) 1202, 1392
PsuI RGATCY 1 cut(s) 811
PsyI GACNNNGTC 1 cut(s) 1392
RsaI GTAC 3 cut(s) 7, 876, 1498
RsaNI GTAC 3 cut(s) 6, 875, 1497
Rsr2I CGGWCCG 1 cut(s) 1271
RsrII CGGWCCG 1 cut(s) 1271
SaqAI TTAA 6 cut(s) 720, 1077, 1115, 1338, 1487, 1503
SatI GCNGC 6 cut(s) 127, 130, 203, 242, 335, 1220
Sau3AI GATC 5 cut(s) 499, 811, 1290, 1342, 1349
Sau96I GGNCC 6 cut(s) 974, 1021, 1121, 1271, 1333, 1407
ScrFI CCNGG 2 cut(s) 863, 1082
SduI GDGCHC 1 cut(s) 1106
SfaNI GCATC 2 cut(s) 907, 1010
SfcI CTRYAG 1 cut(s) 133
SinI GGWCC 5 cut(s) 974, 1021, 1271, 1333, 1407
SmlI CTYRAG 1 cut(s) 1228
SmoI CTYRAG 1 cut(s) 1228
Sse9I AATT 8 cut(s) 13, 432, 509, 682, 717, 796, 826, 1321
SspMI CTAG 1 cut(s) 638
StyD4I CCNGG 2 cut(s) 861, 1080
StyI CCWWGG 3 cut(s) 102, 832, 1058
TaaI ACNGT 4 cut(s) 588, 632, 1198, 1394
TaiI ACGT 2 cut(s) 870, 1314
TaqI TCGA 2 cut(s) 459, 1095
TasI AATT 8 cut(s) 13, 432, 509, 682, 717, 796, 826, 1321
TatI WGTACW 1 cut(s) 874
TauI GCSGC 4 cut(s) 129, 205, 244, 337
TfiI GAWTC 2 cut(s) 910, 1162
Tru1I TTAA 6 cut(s) 720, 1077, 1115, 1338, 1487, 1503
Tru9I TTAA 6 cut(s) 720, 1077, 1115, 1338, 1487, 1503
TscAI CASTG 2 cut(s) 1203, 1397
TseFI GTSAC 3 cut(s) 246, 279, 312
TseI GCWGC 2 cut(s) 129, 1219
Tsp45I GTSAC 3 cut(s) 246, 279, 312
TspDTI ATGAA 3 cut(s) 792, 847, 889
TspGWI ACGGA 1 cut(s) 1506
TspRI CASTG 2 cut(s) 1203, 1397
Tth111I GACNNNGTC 1 cut(s) 1392
VpaK11BI GGWCC 5 cut(s) 974, 1021, 1271, 1333, 1407
XapI RAATTY 2 cut(s) 509, 796
XspI CTAG 1 cut(s) 638
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.