Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0004065

Physical Location & Seq

Genomic Coordinates Reverse (-)

59859471 .. 59861167

Gene Structure 1697 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00209620.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1128 bp

ATGCCCTCCCCCTCCGCCTACTCCTTGCCCGCCGCCACCATCACCGCCACCCCCACCTCCATCACCACCACCGCCGTCACCTCCTCCACCACCATCACCGCCACCACCGGCAATAATCCTTGCAAATTCACGGGCTTTAGCTGTGCAATGTACCCTGACGATAAACAAATGGCAGTCTCCGGAGTTGACTTCAATGGCAGAAAGTTGGGCGGCGCTCAAACCCTTCCACTTGGCGGTTTCATGGACCAGTTACAAGAGTTGGTCTTTTTCCATGCCAACTCCAACAATTTCACAGGCACAATCCCGAAAGTCGACACATCCAAAATTAAGTACTTCTACGAGCTTGACCTCAGCAACAACAAGCTTACTGGGGATTTCCCATATGAAGTTCTAAATGGCAAAAAATTGACATTCTTAGATCTCCGCTTCAACTCTTTCCATGGGTCAGTTCCACCCGAAGTGTTCCGCCTGGACGTTGATGTACTCTTCCTCAACAACAACTATTTCATTGAGCAGATTCCTGATGCTCTTGGCTCCTCACCAGCACATTATCTCACTTTTGCCAACAACAAGTTCTGGGGTCCAATCCCAAATAGCATTGGCAGAGCATCAAAAACGCTTTATGAGGTCCTCTTCCAAAACAACGAACTCTCAGGGTGTTTGCCATGGGAAATCGGCAAACTTAACCGGGCAACCTTGTTCGATGTGAGCACCAACTACTTAACTGGCCCAATACCTCATTCCTTTGCTTGCTTGGCCAAGATGGAGATGCTGGTCTTGGCCAACAACCAGTTCTATGGAACAGTGCCTGAGTTGGTATGCAAGCTGCCCAACTTGTCGAACTTGTCGTTAGCAAACAACTATTTTACCCAAGTCGGACCGGAGTGCAGAAAACTGATCAAGAAAGGGCGTCTCGACGTCAAGAACAATTGTATCTTGGACCTTAAAGATCAAAGATCAAAGAGTGAGTGTGCTTGGTTCTTCTCTAAGGCCAGACACTGTCCCAACGACCGGTCCATGCTTTACATTCCTTGTCAAACGCACTATTCAAATGAGAAGAAGCCCGAACATCGTGGACAAGCTTCTGCCCCATTAAGTTATGGTACTCTTAAACCTCATAATCCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2

Protein Analysis

375

Amino Acids

41.65

Weight (kDa)

8.57

Isoelectric Point (pI)

31.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004065)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49750 AT3G19320
fragaria_vesca	FvH4_2g05530
malus_domestica	MD00G1014300.v1.1 MD05G1086700.v1.1
prunus_persica	Prupe.8G131400_v2.0.a1 Prupe.8G131500_v2.0.a1
pyrus_communis	pycom05g08610 pycom10g08130
rosa_chinensis	RchiOBHm_Chr4g0387761 RchiOBHm_Chr6g0255781 RchiOBHm_Chr6g0255841
rosa_laevigata	RLG00000014812 RLG00000014813
rosa_multiflora	Rmu_sc0001163.1_g000027 Rmu_sc0001163.1_g000029 Rmu_sc0004935.1_g000023
rosa_roxburghii	Rroxscaffold_7G00209620 Rroxscaffold_7G00209650
rosa_rugosa	Rorug05G0561500 Rorug05G0561700
rosa_samantha	Rh1AG424200 Rh4BG013200 Rh6AG079500 Rh6AG079800 Rh6BG072600 Rh6BG072700 Rh6CG070700 Rh6CG070800 Rh6DG068000 Rh6DG068100
rosa_wichuraiana	Rw6G006850 Rw6G006880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	921
AccI	GTMKAC	1 cut(s)	312
AccIII	TCCGGA	1 cut(s)	179
AcoI	YGGCCR	2 cut(s)	756, 780
AcsI	RAATTY	1 cut(s)	125
AcyI	GRCGYC	2 cut(s)	910, 918
AfaI	GTAC	4 cut(s)	152, 332, 483, 1105
AfiI	CCNNNNNNNGG	2 cut(s)	233, 1011
AgeI	ACCGGT	1 cut(s)	1011
AgsI	TTSAA	3 cut(s)	193, 430, 1050
AjnI	CCWGG	1 cut(s)	468
AjuI	GAANNNNNNNTTGG	6 cut(s)	557, 589, 724, 756, 776, 808
AluBI	AGCT	5 cut(s)	141, 343, 364, 826, 1082
AluI	AGCT	5 cut(s)	141, 343, 364, 826, 1082
Alw21I	GWGCWC	1 cut(s)	713
Alw26I	GTCTC	2 cut(s)	181, 917
AlwNI	CAGNNNCTG	2 cut(s)	809, 999
Aor13HI	TCCGGA	1 cut(s)	179
AoxI	GGCC	4 cut(s)	727, 756, 780, 990
ApeKI	GCWGC	1 cut(s)	826
ApoI	RAATTY	1 cut(s)	125
AsiGI	ACCGGT	1 cut(s)	1011
AspLEI	GCGC	1 cut(s)	215
AspS9I	GGNCC	7 cut(s)	244, 581, 628, 728, 878, 940, 1014
AsuC2I	CCSGG	1 cut(s)	689
AsuHPI	GGTGA	5 cut(s)	34, 55, 70, 88, 531
AvaII	GGWCC	6 cut(s)	244, 581, 628, 878, 940, 1014
BaeI	ACNNNNGTAYC	2 cut(s)	916, 949
BalI	TGGCCA	2 cut(s)	758, 782
Bbv12I	GWGCWC	1 cut(s)	713
BbvCI	CCTCAGC	1 cut(s)	350
BbvI	GCAGC	1 cut(s)	813
BccI	CCATC	4 cut(s)	47, 68, 101, 757
BceAI	ACGGC	1 cut(s)	59
BciT130I	CCWGG	1 cut(s)	470
BclI	TGATCA	1 cut(s)	897
BcnI	CCSGG	1 cut(s)	689
BcoDI	GTCTC	2 cut(s)	181, 917
BfoI	RGCGCY	1 cut(s)	216
BglII	AGATCT	1 cut(s)	418
BisI	GCNGC	3 cut(s)	33, 211, 827
BlsI	GCNGC	3 cut(s)	34, 212, 828
BmcAI	AGTACT	1 cut(s)	332
Bme1390I	CCNGG	2 cut(s)	470, 689
Bme18I	GGWCC	6 cut(s)	244, 581, 628, 878, 940, 1014
BmgT120I	GGNCC	7 cut(s)	244, 581, 628, 728, 878, 940, 1014
BmiI	GGNNCC	2 cut(s)	535, 582
BmrFI	CCNGG	2 cut(s)	470, 689
BmrI	ACTGGG	1 cut(s)	378
BmsI	GCATC	3 cut(s)	514, 617, 759
BmuI	ACTGGG	1 cut(s)	378
Bpu10I	CCTNAGC	1 cut(s)	350
BpuMI	CCSGG	1 cut(s)	689
BsaHI	GRCGYC	2 cut(s)	910, 918
BsaJI	CCNNGG	2 cut(s)	439, 665
BsaWI	WCCGGW	3 cut(s)	179, 880, 1011
Bsc4I	CCNNNNNNNGG	2 cut(s)	233, 1011
Bse118I	RCCGGY	2 cut(s)	107, 1011
Bse1I	ACTGG	4 cut(s)	247, 373, 730, 790
Bse3DI	GCAATG	1 cut(s)	153
BseAI	TCCGGA	1 cut(s)	179
BseBI	CCWGG	1 cut(s)	470
BseDI	CCNNGG	2 cut(s)	439, 665
BseGI	GGATG	1 cut(s)	317
BseLI	CCNNNNNNNGG	2 cut(s)	233, 1011
BseMI	GCAATG	1 cut(s)	153
BseMII	CTCAG	3 cut(s)	364, 666, 801
BseNI	ACTGG	4 cut(s)	247, 373, 730, 790
BseRI	GAGGAG	2 cut(s)	73, 526
BseXI	GCAGC	1 cut(s)	813
BsgI	GTGCAG	1 cut(s)	907
Bsh1285I	CGRYCG	1 cut(s)	1012
BshFI	GGCC	4 cut(s)	729, 758, 782, 992
BshTI	ACCGGT	1 cut(s)	1011
BsiEI	CGRYCG	1 cut(s)	1012
BsiHKAI	GWGCWC	1 cut(s)	713
BsiSI	CCGG	5 cut(s)	108, 180, 688, 881, 1012
BslFI	GGGAC	1 cut(s)	987
BslI	CCNNNNNNNGG	2 cut(s)	233, 1011
BsmAI	GTCTC	2 cut(s)	181, 917
BsmBI	CGTCTC	1 cut(s)	917
BsmFI	GGGAC	1 cut(s)	987
BsnI	GGCC	4 cut(s)	729, 758, 782, 992
Bsp1286I	GDGCHC	1 cut(s)	713
Bsp13I	TCCGGA	1 cut(s)	179
Bsp143I	GATC	4 cut(s)	418, 897, 949, 956
Bsp19I	CCATGG	2 cut(s)	439, 665
BspANI	GGCC	4 cut(s)	729, 758, 782, 992
BspCNI	CTCAG	3 cut(s)	363, 665, 802
BspEI	TCCGGA	1 cut(s)	179
BspLI	GGNNCC	2 cut(s)	535, 582
BsrDI	GCAATG	1 cut(s)	153
BsrFI	RCCGGY	2 cut(s)	107, 1011
BsrI	ACTGG	4 cut(s)	247, 373, 730, 790
BssAI	RCCGGY	2 cut(s)	107, 1011
BssECI	CCNNGG	2 cut(s)	439, 665
BssMI	GATC	4 cut(s)	418, 897, 949, 956
BssNI	GRCGYC	2 cut(s)	910, 918
BssT1I	CCWWGG	2 cut(s)	439, 665
Bst2UI	CCWGG	1 cut(s)	470
Bst4CI	ACNGT	2 cut(s)	805, 1001
Bst6I	CTCTTC	2 cut(s)	491, 638
BstACI	GRCGYC	2 cut(s)	910, 918
BstC8I	GCNNGC	3 cut(s)	30, 751, 824
BstDEI	CTNAG	5 cut(s)	350, 415, 652, 810, 987
BstDSI	CCRYGG	2 cut(s)	439, 665
BstF5I	GGATG	1 cut(s)	317
BstH2I	RGCGCY	1 cut(s)	216
BstHHI	GCGC	1 cut(s)	215
BstKTI	GATC	4 cut(s)	421, 900, 952, 959
BstMAI	GTCTC	2 cut(s)	181, 917
BstMBI	GATC	4 cut(s)	418, 897, 949, 956
BstMCI	CGRYCG	1 cut(s)	1012
BstMWI	GCNNNNNNNGC	1 cut(s)	755
BstNI	CCWGG	1 cut(s)	470
BstSCI	CCNGG	2 cut(s)	468, 687
BstV1I	GCAGC	1 cut(s)	813
BstX2I	RGATCY	1 cut(s)	418
BstXI	CCANNNNNNTGG	1 cut(s)	797
BstYI	RGATCY	1 cut(s)	418
BsuRI	GGCC	4 cut(s)	729, 758, 782, 992
BtgI	CCRYGG	2 cut(s)	439, 665
BtsCI	GGATG	1 cut(s)	317
BtsIMutI	CAGTG	2 cut(s)	810, 997
Cac8I	GCNNGC	3 cut(s)	30, 751, 824
CaiI	CAGNNNCTG	2 cut(s)	809, 999
CfoI	GCGC	1 cut(s)	215
Cfr10I	RCCGGY	2 cut(s)	107, 1011
Cfr13I	GGNCC	7 cut(s)	244, 581, 628, 728, 878, 940, 1014
CpoI	CGGWCCG	1 cut(s)	878
CseI	GACGC	1 cut(s)	899
Csp6I	GTAC	4 cut(s)	151, 331, 482, 1104
CspAI	ACCGGT	1 cut(s)	1011
CspI	CGGWCCG	1 cut(s)	878
CviAII	CATG	5 cut(s)	241, 272, 440, 666, 1018
CviQI	GTAC	4 cut(s)	151, 331, 482, 1104
DdeI	CTNAG	5 cut(s)	350, 415, 652, 810, 987
DpnI	GATC	4 cut(s)	420, 899, 951, 958
DpnII	GATC	4 cut(s)	418, 897, 949, 956
EaeI	YGGCCR	2 cut(s)	756, 780
Eam1104I	CTCTTC	2 cut(s)	491, 638
EarI	CTCTTC	2 cut(s)	491, 638
EciI	GGCGGA	2 cut(s)	4, 455
Eco130I	CCWWGG	2 cut(s)	439, 665
Eco47I	GGWCC	6 cut(s)	244, 581, 628, 878, 940, 1014
EcoO109I	RGGNCCY	1 cut(s)	628
EcoRII	CCWGG	1 cut(s)	468
EcoT14I	CCWWGG	2 cut(s)	439, 665
ErhI	CCWWGG	2 cut(s)	439, 665
Esp3I	CGTCTC	1 cut(s)	917
FaeI	CATG	5 cut(s)	244, 275, 443, 669, 1021
FaqI	GGGAC	1 cut(s)	987
FatI	CATG	5 cut(s)	240, 271, 439, 665, 1017
FauI	CCCGC	1 cut(s)	37
FauNDI	CATATG	1 cut(s)	382
FbaI	TGATCA	1 cut(s)	897
FblI	GTMKAC	1 cut(s)	312
Fnu4HI	GCNGC	3 cut(s)	33, 211, 827
FokI	GGATG	1 cut(s)	304
Fsp4HI	GCNGC	3 cut(s)	33, 211, 827
GlaI	GCGC	1 cut(s)	214
GluI	GCNGC	3 cut(s)	33, 211, 827
HaeII	RGCGCY	1 cut(s)	216
HaeIII	GGCC	4 cut(s)	729, 758, 782, 992
HapII	CCGG	5 cut(s)	108, 180, 688, 881, 1012
HgaI	GACGC	1 cut(s)	899
HhaI	GCGC	1 cut(s)	215
Hin1I	GRCGYC	2 cut(s)	910, 918
Hin1II	CATG	5 cut(s)	244, 275, 443, 669, 1021
Hin6I	GCGC	1 cut(s)	213
HinP1I	GCGC	1 cut(s)	213
HincII	GTYRAC	2 cut(s)	187, 313
HindII	GTYRAC	2 cut(s)	187, 313
HindIII	AAGCTT	2 cut(s)	362, 1080
HinfI	GANTC	1 cut(s)	517
HpaII	CCGG	5 cut(s)	108, 180, 688, 881, 1012
HphI	GGTGA	5 cut(s)	34, 55, 70, 88, 531
Hpy166II	GTNNAC	3 cut(s)	187, 313, 1076
Hpy188I	TCNGA	1 cut(s)	878
Hpy188III	TCNNGA	6 cut(s)	180, 304, 521, 901, 914, 922
Hpy8I	GTNNAC	3 cut(s)	187, 313, 1076
Hpy99I	CGWCG	1 cut(s)	920
HpyAV	CCTTC	1 cut(s)	233
HpyCH4III	ACNGT	2 cut(s)	805, 1001
HpyCH4IV	ACGT	2 cut(s)	474, 918
HpyCH4V	TGCA	4 cut(s)	123, 146, 822, 888
HpyF10VI	GCNNNNNNNGC	1 cut(s)	755
HpyF3I	CTNAG	5 cut(s)	350, 415, 652, 810, 987
HpySE526I	ACGT	2 cut(s)	474, 918
Hsp92I	GRCGYC	2 cut(s)	910, 918
Hsp92II	CATG	5 cut(s)	244, 275, 443, 669, 1021
HspAI	GCGC	1 cut(s)	213
Kpn2I	TCCGGA	1 cut(s)	179
Ksp22I	TGATCA	1 cut(s)	897
Kzo9I	GATC	4 cut(s)	418, 897, 949, 956
LmnI	GCTCC	1 cut(s)	539
Lsp1109I	GCAGC	1 cut(s)	813
LweI	GCATC	3 cut(s)	514, 617, 759
MaeII	ACGT	2 cut(s)	474, 918
MaeIII	GTNAC	2 cut(s)	76, 249
MalI	GATC	4 cut(s)	420, 899, 951, 958
MboI	GATC	4 cut(s)	418, 897, 949, 956
MboII	GAAGA	4 cut(s)	478, 625, 973, 1069
MfeI	CAATTG	1 cut(s)	928
MflI	RGATCY	1 cut(s)	418
MhlI	GDGCHC	1 cut(s)	713
MlsI	TGGCCA	2 cut(s)	758, 782
MluCI	AATT	5 cut(s)	125, 286, 324, 404, 928
MluNI	TGGCCA	2 cut(s)	758, 782
MmeI	TCCRAC	2 cut(s)	306, 856
Mox20I	TGGCCA	2 cut(s)	758, 782
MroI	TCCGGA	1 cut(s)	179
MscI	TGGCCA	2 cut(s)	758, 782
MseI	TTAA	6 cut(s)	327, 684, 722, 945, 1094, 1110
Msp20I	TGGCCA	2 cut(s)	758, 782
MspI	CCGG	5 cut(s)	108, 180, 688, 881, 1012
MspR9I	CCNGG	2 cut(s)	470, 689
MunI	CAATTG	1 cut(s)	928
MvaI	CCWGG	1 cut(s)	470
MwoI	GCNNNNNNNGC	1 cut(s)	755
NciI	CCSGG	1 cut(s)	689
NcoI	CCATGG	2 cut(s)	439, 665
NdeI	CATATG	1 cut(s)	382
NdeII	GATC	4 cut(s)	418, 897, 949, 956
NlaIII	CATG	5 cut(s)	244, 275, 443, 669, 1021
NlaIV	GGNNCC	2 cut(s)	535, 582
NmuCI	GTSAC	1 cut(s)	76
PcsI	WCGNNNNNNNCGW	1 cut(s)	845
PfeI	GAWTC	1 cut(s)	517
PflFI	GACNNNGTC	1 cut(s)	999
PinAI	ACCGGT	1 cut(s)	1011
PkrI	GCNGC	3 cut(s)	34, 212, 828
PpuMI	RGGWCCY	1 cut(s)	628
Psp5II	RGGWCCY	1 cut(s)	628
Psp6I	CCWGG	1 cut(s)	468
PspGI	CCWGG	1 cut(s)	468
PspN4I	GGNNCC	2 cut(s)	535, 582
PspPI	GGNCC	7 cut(s)	244, 581, 628, 728, 878, 940, 1014
PspPPI	RGGWCCY	1 cut(s)	628
PstNI	CAGNNNCTG	2 cut(s)	809, 999
PsuI	RGATCY	1 cut(s)	418
PsyI	GACNNNGTC	1 cut(s)	999
RsaI	GTAC	4 cut(s)	152, 332, 483, 1105
RsaNI	GTAC	4 cut(s)	151, 331, 482, 1104
Rsr2I	CGGWCCG	1 cut(s)	878
RsrII	CGGWCCG	1 cut(s)	878
SalI	GTCGAC	1 cut(s)	311
SaqAI	TTAA	6 cut(s)	327, 684, 722, 945, 1094, 1110
SatI	GCNGC	3 cut(s)	33, 211, 827
Sau3AI	GATC	4 cut(s)	418, 897, 949, 956
Sau96I	GGNCC	7 cut(s)	244, 581, 628, 728, 878, 940, 1014
ScaI	AGTACT	1 cut(s)	332
ScrFI	CCNGG	2 cut(s)	470, 689
SduI	GDGCHC	1 cut(s)	713
SfaNI	GCATC	3 cut(s)	514, 617, 759
SinI	GGWCC	6 cut(s)	244, 581, 628, 878, 940, 1014
Sse9I	AATT	5 cut(s)	125, 286, 324, 404, 928
StyD4I	CCNGG	2 cut(s)	468, 687
StyI	CCWWGG	2 cut(s)	439, 665
TaaI	ACNGT	2 cut(s)	805, 1001
TaiI	ACGT	2 cut(s)	477, 921
TaqI	TCGA	4 cut(s)	312, 702, 839, 915
TasI	AATT	5 cut(s)	125, 286, 324, 404, 928
TatI	WGTACW	2 cut(s)	330, 481
TauI	GCSGC	2 cut(s)	35, 213
TfiI	GAWTC	1 cut(s)	517
Tru1I	TTAA	6 cut(s)	327, 684, 722, 945, 1094, 1110
Tru9I	TTAA	6 cut(s)	327, 684, 722, 945, 1094, 1110
TscAI	CASTG	2 cut(s)	810, 1004
TseFI	GTSAC	1 cut(s)	76
TseI	GCWGC	1 cut(s)	826
Tsp45I	GTSAC	1 cut(s)	76
TspDTI	ATGAA	3 cut(s)	229, 399, 496
TspGWI	ACGGA	1 cut(s)	1113
TspRI	CASTG	2 cut(s)	810, 1004
Tth111I	GACNNNGTC	1 cut(s)	999
VpaK11BI	GGWCC	6 cut(s)	244, 581, 628, 878, 940, 1014
XapI	RAATTY	1 cut(s)	125
XmiI	GTMKAC	1 cut(s)	312
ZraI	GACGTC	1 cut(s)	919
ZrmI	AGTACT	1 cut(s)	332

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.