Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0004065

Physical Location & Seq

Genomic Coordinates Reverse (-)

11246817 .. 11251197

Gene Structure 4381 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g08610.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 207 bp

ATGTGCTATTCCTCAACAACAACGGTTTCACTCAGCAGATCCCTGACTATCTTGGCTCCTCACCTGCCCATTACTTCACTTTTGCCAACAACAATTTCACCGGTCCGATCCCAAGAAGCATTGGTCAAGCATCCAGAACCCTTTATGAGGTTCTCTTCCTTGGGAACCAACTTTCAGGGTGTCTGCCTTATGAAATTGGGTACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

69

Amino Acids

7.39

Weight (kDa)

9.38

Isoelectric Point (pI)

58.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004065)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49750 AT3G19320
fragaria_vesca	FvH4_2g05530
malus_domestica	MD00G1014300.v1.1 MD05G1086700.v1.1
prunus_persica	Prupe.8G131400_v2.0.a1 Prupe.8G131500_v2.0.a1
pyrus_communis	pycom05g08610 pycom10g08130
rosa_chinensis	RchiOBHm_Chr4g0387761 RchiOBHm_Chr6g0255781 RchiOBHm_Chr6g0255841
rosa_laevigata	RLG00000014812 RLG00000014813
rosa_multiflora	Rmu_sc0001163.1_g000027 Rmu_sc0001163.1_g000029 Rmu_sc0004935.1_g000023
rosa_roxburghii	Rroxscaffold_7G00209620 Rroxscaffold_7G00209650
rosa_rugosa	Rorug05G0561500 Rorug05G0561700
rosa_samantha	Rh1AG424200 Rh4BG013200 Rh6AG079500 Rh6AG079800 Rh6BG072600 Rh6BG072700 Rh6CG070700 Rh6CG070800 Rh6DG068000 Rh6DG068100
rosa_wichuraiana	Rw6G006850 Rw6G006880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	72
Acc36I	ACCTGC	1 cut(s)	72
Acc65I	GGTACC	1 cut(s)	200
AccB1I	GGYRCC	1 cut(s)	200
AclWI	GGATC	2 cut(s)	33, 102
AfaI	GTAC	1 cut(s)	202
AfiI	CCNNNNNNNGG	1 cut(s)	147
AgeI	ACCGGT	1 cut(s)	100
AjuI	GAANNNNNNNTTGG	2 cut(s)	79, 111
AlwI	GGATC	2 cut(s)	33, 102
AsiGI	ACCGGT	1 cut(s)	100
Asp718I	GGTACC	1 cut(s)	200
AspS9I	GGNCC	1 cut(s)	103
AsuHPI	GGTGA	2 cut(s)	53, 90
AvaII	GGWCC	1 cut(s)	103
BanI	GGYRCC	1 cut(s)	200
BfuAI	ACCTGC	1 cut(s)	72
Bme18I	GGWCC	1 cut(s)	103
BmgT120I	GGNCC	1 cut(s)	103
BmiI	GGNNCC	3 cut(s)	57, 166, 202
BmsI	GCATC	1 cut(s)	139
BsaJI	CCNNGG	1 cut(s)	159
BsaWI	WCCGGW	1 cut(s)	100
Bsc4I	CCNNNNNNNGG	1 cut(s)	147
Bse118I	RCCGGY	1 cut(s)	100
BseDI	CCNNGG	1 cut(s)	159
BseGI	GGATG	1 cut(s)	130
BseLI	CCNNNNNNNGG	1 cut(s)	147
BseMII	CTCAG	1 cut(s)	46
BseRI	GAGGAG	1 cut(s)	48
BshNI	GGYRCC	1 cut(s)	200
BshTI	ACCGGT	1 cut(s)	100
BsiSI	CCGG	1 cut(s)	101
BslI	CCNNNNNNNGG	1 cut(s)	147
Bsp143I	GATC	2 cut(s)	38, 107
BspCNI	CTCAG	1 cut(s)	45
BspLI	GGNNCC	3 cut(s)	57, 166, 202
BspMI	ACCTGC	1 cut(s)	72
BspPI	GGATC	2 cut(s)	33, 102
BspT107I	GGYRCC	1 cut(s)	200
BsrFI	RCCGGY	1 cut(s)	100
BssAI	RCCGGY	1 cut(s)	100
BssECI	CCNNGG	1 cut(s)	159
BssMI	GATC	2 cut(s)	38, 107
BssT1I	CCWWGG	1 cut(s)	159
Bst4CI	ACNGT	1 cut(s)	25
Bst6I	CTCTTC	1 cut(s)	160
BstDEI	CTNAG	1 cut(s)	32
BstENI	CCTNNNNNAGG	1 cut(s)	145
BstF5I	GGATG	1 cut(s)	130
BstKTI	GATC	2 cut(s)	41, 110
BstMBI	GATC	2 cut(s)	38, 107
BstX2I	RGATCY	1 cut(s)	38
BstYI	RGATCY	1 cut(s)	38
BtsCI	GGATG	1 cut(s)	130
BveI	ACCTGC	1 cut(s)	72
Cfr10I	RCCGGY	1 cut(s)	100
Cfr13I	GGNCC	1 cut(s)	103
CpoI	CGGWCCG	1 cut(s)	103
Csp6I	GTAC	1 cut(s)	201
CspAI	ACCGGT	1 cut(s)	100
CspI	CGGWCCG	1 cut(s)	103
CviJI	RGCY	1 cut(s)	56
CviKI_1	RGCY	1 cut(s)	56
CviQI	GTAC	1 cut(s)	201
DdeI	CTNAG	1 cut(s)	32
DpnI	GATC	2 cut(s)	40, 109
DpnII	GATC	2 cut(s)	38, 107
Eam1104I	CTCTTC	1 cut(s)	160
EarI	CTCTTC	1 cut(s)	160
Eco130I	CCWWGG	1 cut(s)	159
Eco47I	GGWCC	1 cut(s)	103
EcoNI	CCTNNNNNAGG	1 cut(s)	145
EcoT14I	CCWWGG	1 cut(s)	159
ErhI	CCWWGG	1 cut(s)	159
FaiI	YATR	2 cut(s)	146, 191
FokI	GGATG	1 cut(s)	117
HapII	CCGG	1 cut(s)	101
HpaII	CCGG	1 cut(s)	101
HphI	GGTGA	2 cut(s)	53, 90
Hpy188I	TCNGA	1 cut(s)	107
Hpy188III	TCNNGA	1 cut(s)	134
HpyCH4III	ACNGT	1 cut(s)	25
HpyF3I	CTNAG	1 cut(s)	32
KpnI	GGTACC	1 cut(s)	204
Kzo9I	GATC	2 cut(s)	38, 107
LmnI	GCTCC	1 cut(s)	61
LpnPI	CCDG	5 cut(s)	56, 77, 114, 147, 161
LweI	GCATC	1 cut(s)	139
MalI	GATC	2 cut(s)	40, 109
MboI	GATC	2 cut(s)	38, 107
MboII	GAAGA	1 cut(s)	147
MflI	RGATCY	1 cut(s)	38
MluCI	AATT	2 cut(s)	93, 194
MnlI	CCTC	3 cut(s)	22, 69, 141
MspI	CCGG	1 cut(s)	101
NdeII	GATC	2 cut(s)	38, 107
NlaIV	GGNNCC	3 cut(s)	57, 166, 202
PaqCI	CACCTGC	1 cut(s)	72
PinAI	ACCGGT	1 cut(s)	100
PspN4I	GGNNCC	3 cut(s)	57, 166, 202
PspPI	GGNCC	1 cut(s)	103
PsuI	RGATCY	1 cut(s)	38
RsaI	GTAC	1 cut(s)	202
RsaNI	GTAC	1 cut(s)	201
Rsr2I	CGGWCCG	1 cut(s)	103
RsrII	CGGWCCG	1 cut(s)	103
Sau3AI	GATC	2 cut(s)	38, 107
Sau96I	GGNCC	1 cut(s)	103
SetI	ASST	3 cut(s)	66, 152, 206
SfaNI	GCATC	1 cut(s)	139
SgeI	CNNG	9 cut(s)	55, 64, 76, 113, 125, 139, 146, 172, 188
SinI	GGWCC	1 cut(s)	103
Sse9I	AATT	2 cut(s)	93, 194
StyI	CCWWGG	1 cut(s)	159
TaaI	ACNGT	1 cut(s)	25
TasI	AATT	2 cut(s)	93, 194
TspDTI	ATGAA	1 cut(s)	206
VpaK11BI	GGWCC	1 cut(s)	103
XagI	CCTNNNNNAGG	1 cut(s)	145

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.