Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0004065

Physical Location & Seq

Genomic Coordinates Reverse (-)

15389311 .. 15391902

Gene Structure 2592 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G131500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1590 bp

ATGGCTACCTTTTCTTTCTTTGCTTCACTTTTGATCTCAATATTTTTAGTACATTTGTGTTTGTACCATGGGGTTGAAAGTGTTGATGATCAATTGATCAGCACACATAGAGAAGCCTTGGAAATCATTATAGGTGGAGGAGGTGTAAATTCTCCTCCTGCCCCTCCTCCTGAATATGAAGAGTGCCCTCCTCCTCCTCCCCCTCCATGCCCTCCATCACCGTCACCATCACCGCCAACTCCACCACCATCACTGCCACCATCACCGCCACCATCACCGCCACCATCACCGCCAACTCCACCACCATCACTGCCACCATCACCGCCACCACTGCCACCATCACCGCCACCATCACCGCCACCACTGCCACCATCACCGCCACCACTGCCACCGCCAAAACGAAAATCCCCGCCACGGCCACCGCCAAAACGAAAATCGCGGCCACCACCAACACCACCTGCCCCATACCCGTTTGAGAGCCAGCGAATTGAACTTGCCTACCATGTGTTTCAAAATTTCCGTCCCTTAATCACGTCTGACCCGAAACACATCGCAAAGTCATGGCAGGGTCCTCATGTTTGCAAGTACAAGGGCGTTGTCTGCGCTATGCATCCTACCTACAAGCAGAAAGCAGTTGCTGGTTTAGACATCAATGGCGCTCTGTTTGGCGGTGATAATGCTAAACTCCCCCTGGATGGCTTCCTTGACAAGTTAGAGGACTTGGCTTTCTTCCATGCAAACTCCAACAATTTCACAGGCTCAGTCCCAAAAGACGTTTCCAAACTAAAATTCTTCTACGAGCTTGACCTCAGCAACAACAAGCTAATCGGAGGCTTCCCTAATGAAGTTCTTGCGGCCACAAATTTGACATTTTTGGACCTCCGGTTCAACTACTTCGCCGGTTCAGTCACACCGGAAGTCTTCAAACTAGATGTTGATGTGCTCTTCCTCAACAACAACAATTTCAATCAGAAGATTCCTGACAATCTTGGTTCCTCACCAGCCCATTACTTCACTTTTGCTAACAACAAGTTCACTGGTCCAATCCCAAGAAGCATTGGCCAAGCATGCAAAACCCTTTATGAGGTTCTCTTCCTTGGGAACAAACTTACAGGGTGCCTGCCGTATGAAATTGGGTACTTAAACCAGGCCACGGTGTTCGATGTGAGCTCGAACTTATTAACAGGCCCAATACCACATTCATTCAGCTGCTTGGCCAAGATTGAGTATCTAAACTTGGCCAGCAACAGGTTCTATGGGCCAGTGCCAGAGCAGGTCTGCACCTTGTCTAATCTGGGGAACTTTTCCTTGGCCAACAACTATTTCACAGAGGTCGGCCCAGAGTGCAGGAAATTGATGAAGAAGAAGCTTCTTGATGTTAGGCAGAATTGCATTTTGGGCGAACCAAACCAGAAAACAAAGGCTCAATGTAATGCCTTCTTCTCCAAGCCTAGAAAGTGCCCCAACGAGAAGGAAATGACCTACGTGCCTTGTAAAAGATACTTGCGTTCAAATGAGAAGAAGCCTGAGCATCAGAAACAAGCTTCTGCCCCATTGTCTTATGGCAGTCTTGTGCGACACAGGCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2

Protein Analysis

530

Amino Acids

58.12

Weight (kDa)

9.01

Isoelectric Point (pI)

66.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004065)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49750 AT3G19320
fragaria_vesca	FvH4_2g05530
malus_domestica	MD00G1014300.v1.1 MD05G1086700.v1.1
prunus_persica	Prupe.8G131400_v2.0.a1 Prupe.8G131500_v2.0.a1
pyrus_communis	pycom05g08610 pycom10g08130
rosa_chinensis	RchiOBHm_Chr4g0387761 RchiOBHm_Chr6g0255781 RchiOBHm_Chr6g0255841
rosa_laevigata	RLG00000014812 RLG00000014813
rosa_multiflora	Rmu_sc0001163.1_g000027 Rmu_sc0001163.1_g000029 Rmu_sc0004935.1_g000023
rosa_roxburghii	Rroxscaffold_7G00209620 Rroxscaffold_7G00209650
rosa_rugosa	Rorug05G0561500 Rorug05G0561700
rosa_samantha	Rh1AG424200 Rh4BG013200 Rh6AG079500 Rh6AG079800 Rh6BG072600 Rh6BG072700 Rh6CG070700 Rh6CG070800 Rh6DG068000 Rh6DG068100
rosa_wichuraiana	Rw6G006850 Rw6G006880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	466
Acc36I	ACCTGC	2 cut(s)	466, 1264
AccB1I	GGYRCC	1 cut(s)	1116
AccII	CGCG	1 cut(s)	439
AcoI	YGGCCR	7 cut(s)	416, 440, 855, 1060, 1215, 1239, 1311
AcsI	RAATTY	4 cut(s)	148, 514, 788, 862
AfaI	GTAC	4 cut(s)	51, 65, 587, 1139
AfiI	CCNNNNNNNGG	5 cut(s)	414, 695, 1084, 1153, 1248
AgsI	TTSAA	7 cut(s)	77, 491, 512, 889, 925, 967, 1512
AjiI	CACGTC	1 cut(s)	534
AjnI	CCWGG	2 cut(s)	690, 1146
AloI	GAACNNNNNNTCC	2 cut(s)	869, 901
AluBI	AGCT	6 cut(s)	802, 823, 1170, 1209, 1369, 1544
AluI	AGCT	6 cut(s)	802, 823, 1170, 1209, 1369, 1544
Alw21I	GWGCWC	2 cut(s)	945, 1172
AlwNI	CAGNNNCTG	1 cut(s)	638
ApeKI	GCWGC	1 cut(s)	1209
ApoI	RAATTY	4 cut(s)	148, 514, 788, 862
ArsI	GACNNNNNNTTYG	3 cut(s)	505, 537, 1569
AspLEI	GCGC	2 cut(s)	605, 659
AspS9I	GGNCC	6 cut(s)	569, 877, 1040, 1187, 1259, 1337
AvaII	GGWCC	3 cut(s)	569, 877, 1040
BaeGI	GKGCMC	2 cut(s)	188, 1463
BaeI	ACNNNNGTAYC	2 cut(s)	1492, 1525
BalI	TGGCCA	4 cut(s)	1062, 1217, 1241, 1313
BanI	GGYRCC	1 cut(s)	1116
BanII	GRGCYC	1 cut(s)	1172
BbsI	GAAGAC	1 cut(s)	913
Bbv12I	GWGCWC	2 cut(s)	945, 1172
BbvCI	CCTCAGC	1 cut(s)	809
BbvI	GCAGC	1 cut(s)	1196
BceAI	ACGGC	2 cut(s)	431, 1108
BciT130I	CCWGG	2 cut(s)	692, 1148
BclI	TGATCA	2 cut(s)	88, 96
BfaI	CTAG	2 cut(s)	929, 1452
BfoI	RGCGCY	1 cut(s)	660
BfuAI	ACCTGC	2 cut(s)	466, 1264
BisI	GCNGC	3 cut(s)	440, 855, 1210
BlsI	GCNGC	3 cut(s)	441, 856, 1211
Bme1390I	CCNGG	2 cut(s)	692, 1148
Bme18I	GGWCC	3 cut(s)	569, 877, 1040
BmgBI	CACGTC	1 cut(s)	534
BmgT120I	GGNCC	6 cut(s)	569, 877, 1040, 1187, 1259, 1337
BmiI	GGNNCC	3 cut(s)	570, 994, 1118
BmrFI	CCNGG	2 cut(s)	692, 1148
BmsI	GCATC	2 cut(s)	619, 1540
BpiI	GAAGAC	1 cut(s)	913
Bpu10I	CCTNAGC	2 cut(s)	809, 1527
BsaAI	YACGTR	1 cut(s)	1486
BsaJI	CCNNGG	7 cut(s)	67, 117, 413, 690, 1096, 1152, 1308
BsaWI	WCCGGW	2 cut(s)	882, 913
BsaXI	ACNNNNNCTCC	2 cut(s)	129, 159
Bsc4I	CCNNNNNNNGG	5 cut(s)	414, 695, 1084, 1153, 1248
Bse118I	RCCGGY	1 cut(s)	899
Bse1I	ACTGG	2 cut(s)	1042, 1262
BseBI	CCWGG	2 cut(s)	692, 1148
BseDI	CCNNGG	7 cut(s)	67, 117, 413, 690, 1096, 1152, 1308
BseGI	GGATG	2 cut(s)	610, 700
BseLI	CCNNNNNNNGG	5 cut(s)	414, 695, 1084, 1153, 1248
BseMII	CTCAG	3 cut(s)	774, 823, 1518
BseNI	ACTGG	2 cut(s)	1042, 1262
BseRI	GAGGAG	6 cut(s)	144, 153, 156, 180, 183, 186
BseSI	GKGCMC	2 cut(s)	188, 1463
BseXI	GCAGC	1 cut(s)	1196
BsgI	GTGCAG	2 cut(s)	1264, 1366
Bsh1236I	CGCG	1 cut(s)	439
BshNI	GGYRCC	1 cut(s)	1116
BsiHKAI	GWGCWC	2 cut(s)	945, 1172
BsiSI	CCGG	3 cut(s)	883, 900, 914
BslFI	GGGAC	2 cut(s)	507, 749
BslI	CCNNNNNNNGG	5 cut(s)	414, 695, 1084, 1153, 1248
BsmFI	GGGAC	2 cut(s)	507, 749
Bsp1286I	GDGCHC	4 cut(s)	188, 945, 1172, 1463
Bsp143I	GATC	3 cut(s)	33, 88, 96
Bsp19I	CCATGG	1 cut(s)	67
BspCNI	CTCAG	3 cut(s)	773, 822, 1519
BspFNI	CGCG	1 cut(s)	439
BspLI	GGNNCC	3 cut(s)	570, 994, 1118
BspMI	ACCTGC	2 cut(s)	466, 1264
BspQI	GCTCTTC	1 cut(s)	950
BspT107I	GGYRCC	1 cut(s)	1116
BsrFI	RCCGGY	1 cut(s)	899
BsrI	ACTGG	2 cut(s)	1042, 1262
BssAI	RCCGGY	1 cut(s)	899
BssECI	CCNNGG	7 cut(s)	67, 117, 413, 690, 1096, 1152, 1308
BssMI	GATC	3 cut(s)	33, 88, 96
BssT1I	CCWWGG	4 cut(s)	67, 117, 1096, 1308
Bst2UI	CCWGG	2 cut(s)	692, 1148
Bst4CI	ACNGT	2 cut(s)	222, 1156
Bst6I	CTCTTC	3 cut(s)	174, 950, 1097
BstBAI	YACGTR	1 cut(s)	1486
BstC8I	GCNNGC	4 cut(s)	482, 1069, 1121, 1243
BstDEI	CTNAG	3 cut(s)	760, 809, 1527
BstDSI	CCRYGG	3 cut(s)	67, 413, 1152
BstENI	CCTNNNNNAGG	1 cut(s)	1082
BstF5I	GGATG	2 cut(s)	610, 700
BstFNI	CGCG	1 cut(s)	439
BstH2I	RGCGCY	1 cut(s)	660
BstHHI	GCGC	2 cut(s)	605, 659
BstKTI	GATC	3 cut(s)	36, 91, 99
BstMBI	GATC	3 cut(s)	33, 88, 96
BstMWI	GCNNNNNNNGC	8 cut(s)	331, 364, 385, 600, 1068, 1344, 1398, 1582
BstNI	CCWGG	2 cut(s)	692, 1148
BstNSI	RCATGY	1 cut(s)	1071
BstSCI	CCNGG	2 cut(s)	690, 1146
BstSLI	GKGCMC	2 cut(s)	188, 1463
BstUI	CGCG	1 cut(s)	439
BstV1I	GCAGC	1 cut(s)	1196
BstV2I	GAAGAC	1 cut(s)	913
BtgI	CCRYGG	3 cut(s)	67, 413, 1152
BtgZI	GCGATG	1 cut(s)	535
BtrI	CACGTC	1 cut(s)	534
BtsCI	GGATG	2 cut(s)	610, 700
BtsI	GCAGTG	5 cut(s)	251, 308, 329, 362, 383
BtsIMutI	CAGTG	7 cut(s)	251, 308, 329, 362, 383, 1035, 1269
BveI	ACCTGC	2 cut(s)	466, 1264
Cac8I	GCNNGC	4 cut(s)	482, 1069, 1121, 1243
CaiI	CAGNNNCTG	1 cut(s)	638
CfoI	GCGC	2 cut(s)	605, 659
Cfr10I	RCCGGY	1 cut(s)	899
Cfr13I	GGNCC	6 cut(s)	569, 877, 1040, 1187, 1259, 1337
Csp6I	GTAC	4 cut(s)	50, 64, 586, 1138
CviAII	CATG	7 cut(s)	68, 207, 503, 561, 575, 734, 1068
CviQI	GTAC	4 cut(s)	50, 64, 586, 1138
DdeI	CTNAG	3 cut(s)	760, 809, 1527
DpnI	GATC	3 cut(s)	35, 90, 98
DpnII	GATC	3 cut(s)	33, 88, 96
EaeI	YGGCCR	7 cut(s)	416, 440, 855, 1060, 1215, 1239, 1311
Eam1104I	CTCTTC	3 cut(s)	174, 950, 1097
EarI	CTCTTC	3 cut(s)	174, 950, 1097
Ecl136II	GAGCTC	1 cut(s)	1170
Eco130I	CCWWGG	4 cut(s)	67, 117, 1096, 1308
Eco24I	GRGCYC	1 cut(s)	1172
Eco47I	GGWCC	3 cut(s)	569, 877, 1040
Eco53kI	GAGCTC	1 cut(s)	1170
EcoICRI	GAGCTC	1 cut(s)	1170
EcoNI	CCTNNNNNAGG	1 cut(s)	1082
EcoO109I	RGGNCCY	1 cut(s)	569
EcoRII	CCWGG	2 cut(s)	690, 1146
EcoT14I	CCWWGG	4 cut(s)	67, 117, 1096, 1308
EcoT22I	ATGCAT	1 cut(s)	612
EcoT38I	GRGCYC	1 cut(s)	1172
ErhI	CCWWGG	4 cut(s)	67, 117, 1096, 1308
FaeI	CATG	7 cut(s)	71, 210, 506, 564, 578, 737, 1071
FaqI	GGGAC	2 cut(s)	507, 749
FatI	CATG	7 cut(s)	67, 206, 502, 560, 574, 733, 1067
FauI	CCCGC	1 cut(s)	417
FbaI	TGATCA	2 cut(s)	88, 96
Fnu4HI	GCNGC	3 cut(s)	440, 855, 1210
FokI	GGATG	2 cut(s)	597, 707
FriOI	GRGCYC	1 cut(s)	1172
Fsp4HI	GCNGC	3 cut(s)	440, 855, 1210
FspBI	CTAG	2 cut(s)	929, 1452
GlaI	GCGC	2 cut(s)	604, 658
GluI	GCNGC	3 cut(s)	440, 855, 1210
HaeII	RGCGCY	1 cut(s)	660
HapII	CCGG	3 cut(s)	883, 900, 914
HhaI	GCGC	2 cut(s)	605, 659
Hin1II	CATG	7 cut(s)	71, 210, 506, 564, 578, 737, 1071
Hin6I	GCGC	2 cut(s)	603, 657
HinP1I	GCGC	2 cut(s)	603, 657
HindIII	AAGCTT	2 cut(s)	1367, 1542
HinfI	GANTC	1 cut(s)	976
HpaII	CCGG	3 cut(s)	883, 900, 914
Hpy166II	GTNNAC	1 cut(s)	1035
Hpy188I	TCNGA	4 cut(s)	538, 830, 972, 1536
Hpy188III	TCNNGA	3 cut(s)	170, 980, 1373
Hpy8I	GTNNAC	1 cut(s)	1035
HpyAV	CCTTC	2 cut(s)	1447, 1465
HpyCH4III	ACNGT	2 cut(s)	222, 1156
HpyCH4IV	ACGT	3 cut(s)	533, 774, 1485
HpyCH4V	TGCA	7 cut(s)	582, 610, 737, 1071, 1281, 1347, 1392
HpyF10VI	GCNNNNNNNGC	8 cut(s)	331, 364, 385, 600, 1068, 1344, 1398, 1582
HpyF3I	CTNAG	3 cut(s)	760, 809, 1527
HpySE526I	ACGT	3 cut(s)	533, 774, 1485
Hsp92II	CATG	7 cut(s)	71, 210, 506, 564, 578, 737, 1071
HspAI	GCGC	2 cut(s)	603, 657
Ksp22I	TGATCA	2 cut(s)	88, 96
Kzo9I	GATC	3 cut(s)	33, 88, 96
LguI	GCTCTTC	1 cut(s)	950
Lsp1109I	GCAGC	1 cut(s)	1196
LweI	GCATC	2 cut(s)	619, 1540
MaeI	CTAG	2 cut(s)	929, 1452
MaeII	ACGT	3 cut(s)	533, 774, 1485
MaeIII	GTNAC	2 cut(s)	222, 907
MalI	GATC	3 cut(s)	35, 90, 98
MboI	GATC	3 cut(s)	33, 88, 96
MfeI	CAATTG	1 cut(s)	92
MhlI	GDGCHC	4 cut(s)	188, 945, 1172, 1463
MlsI	TGGCCA	4 cut(s)	1062, 1217, 1241, 1313
MluNI	TGGCCA	4 cut(s)	1062, 1217, 1241, 1313
MmeI	TCCRAC	1 cut(s)	768
Mox20I	TGGCCA	4 cut(s)	1062, 1217, 1241, 1313
Mph1103I	ATGCAT	1 cut(s)	612
MscI	TGGCCA	4 cut(s)	1062, 1217, 1241, 1313
MseI	TTAA	3 cut(s)	527, 1142, 1181
Msp20I	TGGCCA	4 cut(s)	1062, 1217, 1241, 1313
MspA1I	CMGCKG	1 cut(s)	1209
MspI	CCGG	3 cut(s)	883, 900, 914
MspR9I	CCNGG	2 cut(s)	692, 1148
MunI	CAATTG	1 cut(s)	92
MvaI	CCWGG	2 cut(s)	692, 1148
MvnI	CGCG	1 cut(s)	439
MwoI	GCNNNNNNNGC	8 cut(s)	331, 364, 385, 600, 1068, 1344, 1398, 1582
NcoI	CCATGG	1 cut(s)	67
NdeII	GATC	3 cut(s)	33, 88, 96
NlaIII	CATG	7 cut(s)	71, 210, 506, 564, 578, 737, 1071
NlaIV	GGNNCC	3 cut(s)	570, 994, 1118
NmuCI	GTSAC	2 cut(s)	222, 907
NsiI	ATGCAT	1 cut(s)	612
NspI	RCATGY	1 cut(s)	1071
PaeI	GCATGC	1 cut(s)	1071
PaqCI	CACCTGC	1 cut(s)	466
PciSI	GCTCTTC	1 cut(s)	950
PcsI	WCGNNNNNNNCGW	1 cut(s)	539
PfeI	GAWTC	1 cut(s)	976
PkrI	GCNGC	3 cut(s)	441, 856, 1211
Ppu21I	YACGTR	1 cut(s)	1486
PpuMI	RGGWCCY	1 cut(s)	569
Psp124BI	GAGCTC	1 cut(s)	1172
Psp5II	RGGWCCY	1 cut(s)	569
Psp6I	CCWGG	2 cut(s)	690, 1146
PspGI	CCWGG	2 cut(s)	690, 1146
PspN4I	GGNNCC	3 cut(s)	570, 994, 1118
PspPI	GGNCC	6 cut(s)	569, 877, 1040, 1187, 1259, 1337
PspPPI	RGGWCCY	1 cut(s)	569
PstNI	CAGNNNCTG	1 cut(s)	638
PvuII	CAGCTG	1 cut(s)	1209
RsaI	GTAC	4 cut(s)	51, 65, 587, 1139
RsaNI	GTAC	4 cut(s)	50, 64, 586, 1138
SacI	GAGCTC	1 cut(s)	1172
SapI	GCTCTTC	1 cut(s)	950
SaqAI	TTAA	3 cut(s)	527, 1142, 1181
SatI	GCNGC	3 cut(s)	440, 855, 1210
Sau3AI	GATC	3 cut(s)	33, 88, 96
Sau96I	GGNCC	6 cut(s)	569, 877, 1040, 1187, 1259, 1337
ScrFI	CCNGG	2 cut(s)	692, 1148
SduI	GDGCHC	4 cut(s)	188, 945, 1172, 1463
SfaNI	GCATC	2 cut(s)	619, 1540
SinI	GGWCC	3 cut(s)	569, 877, 1040
SphI	GCATGC	1 cut(s)	1071
SspI	AATATT	1 cut(s)	42
SspMI	CTAG	2 cut(s)	929, 1452
SstI	GAGCTC	1 cut(s)	1172
StyD4I	CCNGG	2 cut(s)	690, 1146
StyI	CCWWGG	4 cut(s)	67, 117, 1096, 1308
TaaI	ACNGT	2 cut(s)	222, 1156
TaiI	ACGT	3 cut(s)	536, 777, 1488
TaqI	TCGA	2 cut(s)	1161, 1172
TatI	WGTACW	2 cut(s)	49, 585
TauI	GCSGC	2 cut(s)	442, 857
TfiI	GAWTC	1 cut(s)	976
Tru1I	TTAA	3 cut(s)	527, 1142, 1181
Tru9I	TTAA	3 cut(s)	527, 1142, 1181
TscAI	CASTG	7 cut(s)	258, 315, 336, 369, 390, 1042, 1269
TseFI	GTSAC	2 cut(s)	222, 907
TseI	GCWGC	1 cut(s)	1209
Tsp45I	GTSAC	2 cut(s)	222, 907
TspDTI	ATGAA	5 cut(s)	192, 858, 1143, 1191, 1373
TspGWI	ACGGA	1 cut(s)	509
TspRI	CASTG	7 cut(s)	258, 315, 336, 369, 390, 1042, 1269
VpaK11BI	GGWCC	3 cut(s)	569, 877, 1040
XagI	CCTNNNNNAGG	1 cut(s)	1082
XapI	RAATTY	4 cut(s)	148, 514, 788, 862
XceI	RCATGY	1 cut(s)	1071
XspI	CTAG	2 cut(s)	929, 1452
Zsp2I	ATGCAT	1 cut(s)	612

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.