RchiOBHm_Chr6g0255781

At4g06744-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0004065
Physical Location & Seq
Forward (+)
11222347 .. 11224644
2298 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ22940

Sequence Viewer

Length: 1233 bp
ATGATGAGTTCCAACATATCTTTCTGTGCTTCAATTCTGTTTTCTATCTGTTTCCTCCATTTATGTTTGCAACATGATCAAGTTGAAGCTCAACCGGGCGGCTTTGCAAGCCCCCGACTTCGAAATGCCTTCAATGTGATTCAAAACTTCAAGTCCAAAATCCAGAGTGACCCTAAAAGAGTCACAGCAACATGGGTTGGCAATAATGTATGCAACTACACGGGCTTTACCTGTGCAGTTGTTCCGGACTTCAAGCAGAGATCGGTTATTGGAGTCGACTTCAATGGTTTCTTGTTTGGCGGCAAAGGTTCCAGGCTCCCCCTCGGTGGCTTCATCGACAAGTTAGACGACTTGGTCTTCTTCCATGCAAACTCCAATAACTTCACAGGCACAGTCCCGCCTGGCACAGCTAAACATCGATTCTTCTATGAGCTCGACCTCAGCAACAACAAGCTCTCTGGAGCGTTCCCAACAGAAGTTCTTGCTGCCTCGAACTTGACTTTCTTGGATCTCCGGTTCAACTCGTTTAACAACTCTGTTCCTTCCACGGTGTTTAACCTAGACGTTGATGTACTCTTCCTCAACAACAATAATCTCTTTCAGCAGATTCCAAGAACTCTTGGCTCGACTCCAGCCCATTATATCACTTTCGCTAACAACAAATTCTCCGGTACAATCCCAAGAAGCATTGGCCAAGCATCAAACACTCTTTATGAGGTTCTCTTCCTGAAGAACGGCCTTTCAGGGTGTTTACCAATGGAAATAGGGAACTTGAAGCAGTCCACCGTGTTTGATGTGAGCTTCAACCAGTTAACGGGGCCGATACCGCTATCGTTTGGTTGCTTGTCCAATGTACAGCTTCTGAACTTGGCCAACAACAAGTTCTATGGGGCAGTGCCCGAGTCGGTTTGCCAGTTGCCTAAGCTAGCGAAATTGACACTGGCTAAAAACTGGTTCACCCAGGTCGGACCACAATGTAGGAAGTTGATCAGGAAAGGGGTTCTTGATATCAAGTTGAACTGCATTTTGGACCTTCCGAATCAGAGGTCAGCGGCTGATTGTGCTAATTTCTTCTCCAAGCCCAGACAGTGTCCCAATGAGAGGTCCTTGACTATCATTCCTTGTAGAAGAAGGTCCTCTTCAAGTACTTTAAGTGAGGAGAAGTCTGATGGTCCTCAAGCACTGGCTCCTGCCCCGCTATCTTATCGTACTCTCGTACCGCATAGGTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2

Protein Analysis

410

Amino Acids

45.21

Weight (kDa)

9.3

Isoelectric Point (pI)

36.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 353
AccI GTMKAC 1 cut(s) 276
AccIII TCCGGA 1 cut(s) 244
AciI CCGC 7 cut(s) 99, 300, 398, 827, 1052, 1196, 1220
AclWI GGATC 1 cut(s) 516
AcoI YGGCCR 2 cut(s) 691, 870
AcsI RAATTY 1 cut(s) 662
AcuI CTGAAG 1 cut(s) 749
AfaI GTAC 6 cut(s) 573, 673, 855, 1147, 1210, 1218
AfiI CCNNNNNNNGG 3 cut(s) 326, 814, 1101
AjnI CCWGG 3 cut(s) 311, 400, 960
AjuI GAANNNNNNNTTGG 5 cut(s) 37, 866, 898, 1010, 1042
AloI GAACNNNNNNTCC 2 cut(s) 500, 532
AluBI AGCT 7 cut(s) 89, 410, 433, 454, 801, 859, 925
AluI AGCT 7 cut(s) 89, 410, 433, 454, 801, 859, 925
Alw21I GWGCWC 1 cut(s) 435
AlwI GGATC 1 cut(s) 516
AlwNI CAGNNNCTG 2 cut(s) 862, 1055
Ama87I CYCGRG 1 cut(s) 899
Aor13HI TCCGGA 1 cut(s) 244
AoxI GGCC 4 cut(s) 691, 736, 818, 870
ApeKI GCWGC 1 cut(s) 485
ApoI RAATTY 1 cut(s) 662
ArsI GACNNNNNNTTYG 2 cut(s) 1031, 1063
AspS9I GGNCC 6 cut(s) 818, 968, 1030, 1104, 1134, 1172
AsuC2I CCSGG 1 cut(s) 96
AsuHPI GGTGA 1 cut(s) 949
AsuII TTCGAA 1 cut(s) 121
AsuNHI GCTAGC 1 cut(s) 925
AvaI CYCGRG 1 cut(s) 899
AvaII GGWCC 5 cut(s) 968, 1030, 1104, 1134, 1172
BaeGI GKGCMC 1 cut(s) 900
BaeI ACNNNNGTAYC 2 cut(s) 1200, 1233
BalI TGGCCA 2 cut(s) 693, 872
BanII GRGCYC 1 cut(s) 435
BbsI GAAGAC 1 cut(s) 349
Bbv12I GWGCWC 1 cut(s) 435
BbvCI CCTCAGC 1 cut(s) 440
BbvI GCAGC 1 cut(s) 472
BccI CCATC 1 cut(s) 1163
BceAI ACGGC 1 cut(s) 751
BciT130I CCWGG 3 cut(s) 313, 402, 962
BclI TGATCA 2 cut(s) 76, 987
BcnI CCSGG 1 cut(s) 96
BfaI CTAG 2 cut(s) 560, 926
BisI GCNGC 4 cut(s) 100, 301, 486, 1053
BlsI GCNGC 4 cut(s) 101, 302, 487, 1054
BmcAI AGTACT 1 cut(s) 1147
Bme1390I CCNGG 4 cut(s) 96, 313, 402, 962
Bme18I GGWCC 5 cut(s) 968, 1030, 1104, 1134, 1172
BmeT110I CYCGRG 1 cut(s) 899
BmgT120I GGNCC 6 cut(s) 818, 968, 1030, 1104, 1134, 1172
BmiI GGNNCC 4 cut(s) 310, 317, 819, 1188
BmrFI CCNGG 4 cut(s) 96, 313, 402, 962
BmsI GCATC 1 cut(s) 707
BmtI GCTAGC 1 cut(s) 929
BpiI GAAGAC 1 cut(s) 349
BpmI CTGGAG 2 cut(s) 480, 615
Bpu10I CCTNAGC 2 cut(s) 440, 921
Bpu14I TTCGAA 1 cut(s) 121
BpuEI CTTGAG 1 cut(s) 1161
BpuMI CCSGG 1 cut(s) 96
Bsa29I ATCGAT 1 cut(s) 418
BsaJI CCNNGG 3 cut(s) 322, 546, 960
BsaWI WCCGGW 3 cut(s) 244, 513, 668
BsaXI ACNNNNNCTCC 2 cut(s) 650, 680
Bsc4I CCNNNNNNNGG 3 cut(s) 326, 814, 1101
Bse1I ACTGG 5 cut(s) 808, 913, 945, 956, 1188
BseAI TCCGGA 1 cut(s) 244
BseBI CCWGG 3 cut(s) 313, 402, 962
BseCI ATCGAT 1 cut(s) 418
BseDI CCNNGG 3 cut(s) 322, 546, 960
BseLI CCNNNNNNNGG 3 cut(s) 326, 814, 1101
BseMII CTCAG 1 cut(s) 454
BseNI ACTGG 5 cut(s) 808, 913, 945, 956, 1188
BseRI GAGGAG 1 cut(s) 1172
BseSI GKGCMC 1 cut(s) 900
BseXI GCAGC 1 cut(s) 472
BsgI GTGCAG 1 cut(s) 255
BshFI GGCC 4 cut(s) 693, 738, 820, 872
BshVI ATCGAT 1 cut(s) 418
BsiHKAI GWGCWC 1 cut(s) 435
BsiHKCI CYCGRG 1 cut(s) 899
BsiSI CCGG 4 cut(s) 95, 245, 514, 669
BslFI GGGAC 2 cut(s) 380, 1077
BslI CCNNNNNNNGG 3 cut(s) 326, 814, 1101
BsmFI GGGAC 2 cut(s) 380, 1077
BsnI GGCC 4 cut(s) 693, 738, 820, 872
BsoBI CYCGRG 1 cut(s) 899
Bsp119I TTCGAA 1 cut(s) 121
Bsp1286I GDGCHC 2 cut(s) 435, 900
Bsp13I TCCGGA 1 cut(s) 244
Bsp1407I TGTACA 1 cut(s) 853
Bsp143I GATC 4 cut(s) 76, 260, 508, 987
BspACI CCGC 7 cut(s) 99, 300, 398, 827, 1052, 1196, 1220
BspANI GGCC 4 cut(s) 693, 738, 820, 872
BspCNI CTCAG 1 cut(s) 453
BspDI ATCGAT 1 cut(s) 418
BspEI TCCGGA 1 cut(s) 244
BspLI GGNNCC 4 cut(s) 310, 317, 819, 1188
BspOI GCTAGC 1 cut(s) 929
BspPI GGATC 1 cut(s) 516
BspT104I TTCGAA 1 cut(s) 121
BsrGI TGTACA 1 cut(s) 853
BsrI ACTGG 5 cut(s) 808, 913, 945, 956, 1188
BssECI CCNNGG 3 cut(s) 322, 546, 960
BssMI GATC 4 cut(s) 76, 260, 508, 987
Bst2UI CCWGG 3 cut(s) 313, 402, 962
Bst4CI ACNGT 4 cut(s) 394, 550, 787, 1089
Bst6I CTCTTC 3 cut(s) 581, 728, 1144
BstAUI TGTACA 1 cut(s) 853
BstBI TTCGAA 1 cut(s) 121
BstC8I GCNNGC 2 cut(s) 109, 927
BstDEI CTNAG 2 cut(s) 440, 921
BstDSI CCRYGG 1 cut(s) 546
BstKTI GATC 4 cut(s) 79, 263, 511, 990
BstMBI GATC 4 cut(s) 76, 260, 508, 987
BstMWI GCNNNNNNNGC 3 cut(s) 108, 826, 1061
BstNI CCWGG 3 cut(s) 313, 402, 962
BstSCI CCNGG 4 cut(s) 94, 311, 400, 960
BstSLI GKGCMC 1 cut(s) 900
BstV1I GCAGC 1 cut(s) 472
BstV2I GAAGAC 1 cut(s) 349
BstX2I RGATCY 1 cut(s) 508
BstYI RGATCY 1 cut(s) 508
Bsu15I ATCGAT 1 cut(s) 418
BsuRI GGCC 4 cut(s) 693, 738, 820, 872
BsuTUI ATCGAT 1 cut(s) 418
BtgI CCRYGG 1 cut(s) 546
BtsI GCAGTG 1 cut(s) 900
BtsIMutI CAGTG 4 cut(s) 900, 938, 1094, 1181
Cac8I GCNNGC 2 cut(s) 109, 927
CaiI CAGNNNCTG 2 cut(s) 862, 1055
Cfr13I GGNCC 6 cut(s) 818, 968, 1030, 1104, 1134, 1172
ClaI ATCGAT 1 cut(s) 418
Csp6I GTAC 6 cut(s) 572, 672, 854, 1146, 1209, 1217
CspCI CAANNNNNGTGG 2 cut(s) 772, 807
CviAII CATG 3 cut(s) 74, 192, 365
CviQI GTAC 6 cut(s) 572, 672, 854, 1146, 1209, 1217
DdeI CTNAG 2 cut(s) 440, 921
DpnI GATC 4 cut(s) 78, 262, 510, 989
DpnII GATC 4 cut(s) 76, 260, 508, 987
DrdI GACNNNNNNGTC 1 cut(s) 353
DseDI GACNNNNNNGTC 1 cut(s) 353
EaeI YGGCCR 2 cut(s) 691, 870
Eam1104I CTCTTC 3 cut(s) 581, 728, 1144
EarI CTCTTC 3 cut(s) 581, 728, 1144
Ecl136II GAGCTC 1 cut(s) 433
Eco24I GRGCYC 1 cut(s) 435
Eco32I GATATC 1 cut(s) 1009
Eco47I GGWCC 5 cut(s) 968, 1030, 1104, 1134, 1172
Eco53kI GAGCTC 1 cut(s) 433
Eco57I CTGAAG 1 cut(s) 749
Eco88I CYCGRG 1 cut(s) 899
EcoICRI GAGCTC 1 cut(s) 433
EcoO109I RGGNCCY 2 cut(s) 1104, 1134
EcoRII CCWGG 3 cut(s) 311, 400, 960
EcoRV GATATC 1 cut(s) 1009
EcoT38I GRGCYC 1 cut(s) 435
FaeI CATG 3 cut(s) 77, 195, 368
FalI AAGNNNNNCTT 4 cut(s) 987, 1019, 1123, 1155
FaqI GGGAC 2 cut(s) 380, 1077
FatI CATG 3 cut(s) 73, 191, 364
FauI CCCGC 2 cut(s) 405, 1203
FbaI TGATCA 2 cut(s) 76, 987
FblI GTMKAC 1 cut(s) 276
Fnu4HI GCNGC 4 cut(s) 100, 301, 486, 1053
FriOI GRGCYC 1 cut(s) 435
Fsp4HI GCNGC 4 cut(s) 100, 301, 486, 1053
FspBI CTAG 2 cut(s) 560, 926
GluI GCNGC 4 cut(s) 100, 301, 486, 1053
GsuI CTGGAG 2 cut(s) 480, 615
HaeIII GGCC 4 cut(s) 693, 738, 820, 872
HapII CCGG 4 cut(s) 95, 245, 514, 669
Hin1II CATG 3 cut(s) 77, 195, 368
HincII GTYRAC 2 cut(s) 277, 813
HindII GTYRAC 2 cut(s) 277, 813
HinfI GANTC 8 cut(s) 139, 180, 273, 420, 607, 628, 902, 1039
HpaI GTTAAC 1 cut(s) 813
HpaII CCGG 4 cut(s) 95, 245, 514, 669
HphI GGTGA 1 cut(s) 949
Hpy166II GTNNAC 5 cut(s) 277, 752, 783, 813, 957
Hpy188I TCNGA 5 cut(s) 864, 968, 1038, 1044, 1168
Hpy188III TCNNGA 6 cut(s) 163, 245, 459, 727, 991, 1004
Hpy8I GTNNAC 5 cut(s) 277, 752, 783, 813, 957
HpyAV CCTTC 4 cut(s) 139, 552, 1043, 1125
HpyCH4III ACNGT 4 cut(s) 394, 550, 787, 1089
HpyCH4IV ACGT 1 cut(s) 564
HpyCH4V TGCA 6 cut(s) 70, 107, 213, 236, 368, 1023
HpyF10VI GCNNNNNNNGC 3 cut(s) 108, 826, 1061
HpyF3I CTNAG 2 cut(s) 440, 921
HpySE526I ACGT 1 cut(s) 564
Hsp92II CATG 3 cut(s) 77, 195, 368
Kpn2I TCCGGA 1 cut(s) 244
Ksp22I TGATCA 2 cut(s) 76, 987
KspAI GTTAAC 1 cut(s) 813
Kzo9I GATC 4 cut(s) 76, 260, 508, 987
LmnI GCTCC 3 cut(s) 321, 461, 1192
Lsp1109I GCAGC 1 cut(s) 472
LweI GCATC 1 cut(s) 707
MaeI CTAG 2 cut(s) 560, 926
MaeII ACGT 1 cut(s) 564
MaeIII GTNAC 2 cut(s) 167, 181
MalI GATC 4 cut(s) 78, 262, 510, 989
MboI GATC 4 cut(s) 76, 260, 508, 987
MboII GAAGA 9 cut(s) 349, 352, 415, 568, 715, 742, 1063, 1131, 1140
MflI RGATCY 1 cut(s) 508
MhlI GDGCHC 2 cut(s) 435, 900
MlsI TGGCCA 2 cut(s) 693, 872
MluCI AATT 4 cut(s) 33, 662, 932, 1066
MluNI TGGCCA 2 cut(s) 693, 872
MlyI GAGTC 4 cut(s) 189, 282, 622, 911
MmeI TCCRAC 2 cut(s) 36, 946
Mox20I TGGCCA 2 cut(s) 693, 872
MroI TCCGGA 1 cut(s) 244
MscI TGGCCA 2 cut(s) 693, 872
MseI TTAA 4 cut(s) 528, 555, 812, 1151
Msp20I TGGCCA 2 cut(s) 693, 872
MspA1I CMGCKG 1 cut(s) 1052
MspI CCGG 4 cut(s) 95, 245, 514, 669
MspR9I CCNGG 4 cut(s) 96, 313, 402, 962
MvaI CCWGG 3 cut(s) 313, 402, 962
MwoI GCNNNNNNNGC 3 cut(s) 108, 826, 1061
NciI CCSGG 1 cut(s) 96
NdeII GATC 4 cut(s) 76, 260, 508, 987
NheI GCTAGC 1 cut(s) 925
NlaIII CATG 3 cut(s) 77, 195, 368
NlaIV GGNNCC 4 cut(s) 310, 317, 819, 1188
NmuCI GTSAC 2 cut(s) 167, 181
NspV TTCGAA 1 cut(s) 121
PfeI GAWTC 4 cut(s) 139, 420, 607, 1039
PflFI GACNNNGTC 2 cut(s) 353, 1089
PkrI GCNGC 4 cut(s) 101, 302, 487, 1054
PleI GAGTC 4 cut(s) 188, 281, 622, 910
PpsI GAGTC 4 cut(s) 188, 281, 622, 910
PpuMI RGGWCCY 2 cut(s) 1104, 1134
Psp124BI GAGCTC 1 cut(s) 435
Psp5II RGGWCCY 2 cut(s) 1104, 1134
Psp6I CCWGG 3 cut(s) 311, 400, 960
PspGI CCWGG 3 cut(s) 311, 400, 960
PspN4I GGNNCC 4 cut(s) 310, 317, 819, 1188
PspPI GGNCC 6 cut(s) 818, 968, 1030, 1104, 1134, 1172
PspPPI RGGWCCY 2 cut(s) 1104, 1134
PstNI CAGNNNCTG 2 cut(s) 862, 1055
PsuI RGATCY 1 cut(s) 508
PsyI GACNNNGTC 2 cut(s) 353, 1089
RsaI GTAC 6 cut(s) 573, 673, 855, 1147, 1210, 1218
RsaNI GTAC 6 cut(s) 572, 672, 854, 1146, 1209, 1217
SacI GAGCTC 1 cut(s) 435
SalI GTCGAC 1 cut(s) 275
SaqAI TTAA 4 cut(s) 528, 555, 812, 1151
SatI GCNGC 4 cut(s) 100, 301, 486, 1053
Sau3AI GATC 4 cut(s) 76, 260, 508, 987
Sau96I GGNCC 6 cut(s) 818, 968, 1030, 1104, 1134, 1172
ScaI AGTACT 1 cut(s) 1147
SchI GAGTC 4 cut(s) 189, 282, 622, 911
ScrFI CCNGG 4 cut(s) 96, 313, 402, 962
SduI GDGCHC 2 cut(s) 435, 900
SfaNI GCATC 1 cut(s) 707
SfuI TTCGAA 1 cut(s) 121
SinI GGWCC 5 cut(s) 968, 1030, 1104, 1134, 1172
SmlI CTYRAG 1 cut(s) 1176
SmoI CTYRAG 1 cut(s) 1176
Sse9I AATT 4 cut(s) 33, 662, 932, 1066
SsiI CCGC 7 cut(s) 99, 300, 398, 827, 1052, 1196, 1220
SspMI CTAG 2 cut(s) 560, 926
SstI GAGCTC 1 cut(s) 435
StyD4I CCNGG 4 cut(s) 94, 311, 400, 960
TaaI ACNGT 4 cut(s) 394, 550, 787, 1089
TaiI ACGT 1 cut(s) 567
TaqI TCGA 7 cut(s) 121, 276, 336, 418, 435, 491, 626
TasI AATT 4 cut(s) 33, 662, 932, 1066
TatI WGTACW 3 cut(s) 571, 853, 1145
TauI GCSGC 3 cut(s) 102, 303, 1055
TfiI GAWTC 4 cut(s) 139, 420, 607, 1039
Tru1I TTAA 4 cut(s) 528, 555, 812, 1151
Tru9I TTAA 4 cut(s) 528, 555, 812, 1151
TscAI CASTG 4 cut(s) 900, 945, 1094, 1188
TseFI GTSAC 2 cut(s) 167, 181
TseI GCWGC 1 cut(s) 485
Tsp45I GTSAC 2 cut(s) 167, 181
TspDTI ATGAA 1 cut(s) 322
TspRI CASTG 4 cut(s) 900, 945, 1094, 1188
Tth111I GACNNNGTC 2 cut(s) 353, 1089
VpaK11BI GGWCC 5 cut(s) 968, 1030, 1104, 1134, 1172
XapI RAATTY 1 cut(s) 662
XmiI GTMKAC 1 cut(s) 276
XspI CTAG 2 cut(s) 560, 926
ZrmI AGTACT 1 cut(s) 1147
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.