Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004935.1

Orthogroup ID

OG0004065

Physical Location & Seq

Genomic Coordinates Forward (+)

121449 .. 123160

Gene Structure 1712 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004935.1_g000023.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1449 bp

atgggtaccaacaattctttctttgcttcagttttgctttcactactcgtgctacatttgtgtttgcaacatgatcaagttgaaggtgctgaaagagaagccttggaaataatcattggtggtggcggcagctacagccctcctcctgctccctcccccgaatacgaagaatgccctccccctccgcctcctccttgcccaccgcaaccattcccgccaccgccacctccatcaccaccaccgccatcacttccaacacctccatcaccgccgctaccgtctccaccaccaccaccaaaactccgtccgtctccaccaccaccacctccatcaccgccaccgcagtacggtccaccaccacgaccacgaccacgactacctccaccatcaccacgacgagcacactctccggtaccagtaccaaacgaccgacttggaattgccctcagagtaattaaaaagttcaaagacctaatcgggtatgacccaaaaaacatcacaggcacatgggtcggcacaaatccttgcaagttcacgggatttaaatgtgcaatggtccctgtctataaccaaatggcagtcaccggagttgacttcaatggcaaaggactagttggcaaaccgttcggtggcaaagatataaagctaccccttggcggtttcgtagaccagttaccagacttggtgtttttccatgccaactccaacaatttcacaggctcagtcccggaagacatatccaaacttaaatacttctacgagctcgacctcagcaacaacaagctaactgggaacatcccatatgaagttctaagtgccacaaagttgacattcttagatctcgggttcaactttttcactgagcagattcctgatgctattggctcctcaccagcacattatctcacttttgccaacaaccagttctcgggtccaatcccaaatagcattggcaaagcatcaaaaacgctttatgaggtcgtcttcctcaacaacaaactctcagggtgtttgccatgggaaatcggcaaacttagccaggcaaccttgttcgatgtgagctccaactacttaacaggcccaattcctcattcctttacttgcttggccaagatggagattctggtcttggacaataaccagttctatggaacagtgcctgagttggtatgcaagctgcccaccttgacgaacttgtcgatagcaaacaactatttcacccaagccggacccgagtgcagaaaactgatcaagaaagggtttctcaacgtcaagaacaattgtatcttggaccttaaagatcaaagatcaaagagtgattgtgcttggttcttctctaagcccagaaactgtcccaacaagcggtccatgatttacattccttgtcaaaatcactattcaacttctgccccattaagttacggtactcttaaacagcataatccgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2

Protein Analysis

482

Amino Acids

52.63

Weight (kDa)

8.89

Isoelectric Point (pI)

57.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004065)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49750 AT3G19320
fragaria_vesca	FvH4_2g05530
malus_domestica	MD00G1014300.v1.1 MD05G1086700.v1.1
prunus_persica	Prupe.8G131400_v2.0.a1 Prupe.8G131500_v2.0.a1
pyrus_communis	pycom05g08610 pycom10g08130
rosa_chinensis	RchiOBHm_Chr4g0387761 RchiOBHm_Chr6g0255781 RchiOBHm_Chr6g0255841
rosa_laevigata	RLG00000014812 RLG00000014813
rosa_multiflora	Rmu_sc0001163.1_g000027 Rmu_sc0001163.1_g000029 Rmu_sc0004935.1_g000023
rosa_roxburghii	Rroxscaffold_7G00209620 Rroxscaffold_7G00209650
rosa_rugosa	Rorug05G0561500 Rorug05G0561700
rosa_samantha	Rh1AG424200 Rh4BG013200 Rh6AG079500 Rh6AG079800 Rh6BG072600 Rh6BG072700 Rh6CG070700 Rh6CG070800 Rh6DG068000 Rh6DG068100
rosa_wichuraiana	Rw6G006850 Rw6G006880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1195
Acc65I	GGTACC	2 cut(s)	5, 412
AccB1I	GGYRCC	2 cut(s)	5, 412
AccI	GTMKAC	1 cut(s)	666
AcoI	YGGCCR	1 cut(s)	1107
AcuI	CTGAAG	1 cut(s)	12
AfaI	GTAC	5 cut(s)	7, 347, 414, 420, 1426
AfiI	CCNNNNNNNGG	5 cut(s)	347, 629, 656, 928, 1362
AgsI	TTSAA	5 cut(s)	83, 466, 598, 850, 1401
AhlI	ACTAGT	1 cut(s)	610
AjnI	CCWGG	1 cut(s)	1038
AjuI	GAANNNNNNNTTGG	7 cut(s)	34, 99, 131, 908, 940, 1075, 1107
AluBI	AGCT	6 cut(s)	132, 646, 763, 784, 1062, 1177
AluI	AGCT	6 cut(s)	132, 646, 763, 784, 1062, 1177
Alw21I	GWGCWC	3 cut(s)	403, 765, 1064
Alw26I	GTCTC	2 cut(s)	285, 315
AlwNI	CAGNNNCTG	2 cut(s)	1160, 1350
Ama87I	CYCGRG	3 cut(s)	842, 928, 1232
AoxI	GGCC	2 cut(s)	1078, 1107
ApeKI	GCWGC	2 cut(s)	129, 1177
Asp718I	GGTACC	2 cut(s)	5, 412
AspS9I	GGNCC	7 cut(s)	350, 556, 932, 1079, 1229, 1291, 1365
AsuC2I	CCSGG	1 cut(s)	728
AsuHPI	GGTGA	7 cut(s)	225, 258, 324, 381, 574, 882, 1210
AvaI	CYCGRG	3 cut(s)	842, 928, 1232
AvaII	GGWCC	6 cut(s)	350, 556, 932, 1229, 1291, 1365
BaeI	ACNNNNGTAYC	2 cut(s)	1267, 1300
BalI	TGGCCA	1 cut(s)	1109
BanI	GGYRCC	2 cut(s)	5, 412
BanII	GRGCYC	2 cut(s)	765, 1064
BauI	CACGAG	1 cut(s)	47
BbsI	GAAGAC	2 cut(s)	738, 976
Bbv12I	GWGCWC	3 cut(s)	403, 765, 1064
BbvCI	CCTCAGC	1 cut(s)	770
BbvI	GCAGC	2 cut(s)	141, 1164
BccI	CCATC	6 cut(s)	238, 253, 271, 337, 394, 1108
BcgI	CGANNNNNNTGC	4 cut(s)	493, 527, 607, 641
BciT130I	CCWGG	1 cut(s)	1040
BclI	TGATCA	2 cut(s)	73, 1248
BcnI	CCSGG	1 cut(s)	728
BcoDI	GTCTC	2 cut(s)	285, 315
BcuI	ACTAGT	1 cut(s)	610
BfaI	CTAG	1 cut(s)	611
BfmI	CTRYAG	1 cut(s)	133
BglII	AGATCT	1 cut(s)	838
BisI	GCNGC	4 cut(s)	127, 130, 272, 1178
BlsI	GCNGC	4 cut(s)	128, 131, 273, 1179
Bme1390I	CCNGG	2 cut(s)	728, 1040
Bme18I	GGWCC	6 cut(s)	350, 556, 932, 1229, 1291, 1365
BmeT110I	CYCGRG	3 cut(s)	842, 928, 1232
BmgT120I	GGNCC	7 cut(s)	350, 556, 932, 1079, 1229, 1291, 1365
BmiI	GGNNCC	6 cut(s)	7, 414, 558, 886, 933, 1231
BmrFI	CCNGG	2 cut(s)	728, 1040
BmrI	ACTGGG	1 cut(s)	798
BmsI	GCATC	2 cut(s)	865, 968
BmuI	ACTGGG	1 cut(s)	798
BpiI	GAAGAC	2 cut(s)	738, 976
Bpu10I	CCTNAGC	1 cut(s)	770
BpuMI	CCSGG	1 cut(s)	728
BsaJI	CCNNGG	3 cut(s)	102, 652, 1016
BsaWI	WCCGGW	2 cut(s)	409, 584
BsaXI	ACNNNNNCTCC	2 cut(s)	285, 315
Bsc4I	CCNNNNNNNGG	5 cut(s)	347, 629, 656, 928, 1362
Bse1I	ACTGG	5 cut(s)	416, 670, 793, 922, 1141
Bse3DI	GCAATG	1 cut(s)	558
BseBI	CCWGG	1 cut(s)	1040
BseDI	CCNNGG	3 cut(s)	102, 652, 1016
BseGI	GGATG	1 cut(s)	795
BseLI	CCNNNNNNNGG	5 cut(s)	347, 629, 656, 928, 1362
BseMI	GCAATG	1 cut(s)	558
BseMII	CTCAG	6 cut(s)	460, 735, 784, 852, 1017, 1152
BseNI	ACTGG	5 cut(s)	416, 670, 793, 922, 1141
BseRI	GAGGAG	3 cut(s)	132, 180, 877
BseXI	GCAGC	2 cut(s)	141, 1164
BsgI	GTGCAG	1 cut(s)	1258
Bsh1285I	CGRYCG	1 cut(s)	430
BshFI	GGCC	2 cut(s)	1080, 1109
BshNI	GGYRCC	2 cut(s)	5, 412
BsiEI	CGRYCG	1 cut(s)	430
BsiHKAI	GWGCWC	3 cut(s)	403, 765, 1064
BsiHKCI	CYCGRG	3 cut(s)	842, 928, 1232
BsiSI	CCGG	4 cut(s)	410, 585, 728, 1227
BslFI	GGGAC	3 cut(s)	542, 710, 1338
BslI	CCNNNNNNNGG	5 cut(s)	347, 629, 656, 928, 1362
BsmAI	GTCTC	2 cut(s)	285, 315
BsmBI	CGTCTC	2 cut(s)	285, 315
BsmFI	GGGAC	3 cut(s)	542, 710, 1338
BsmI	GAATGC	1 cut(s)	176
BsnI	GGCC	2 cut(s)	1080, 1109
BsoBI	CYCGRG	3 cut(s)	842, 928, 1232
Bsp1286I	GDGCHC	3 cut(s)	403, 765, 1064
Bsp143I	GATC	5 cut(s)	73, 838, 1248, 1300, 1307
Bsp19I	CCATGG	1 cut(s)	1016
BspANI	GGCC	2 cut(s)	1080, 1109
BspCNI	CTCAG	6 cut(s)	459, 734, 783, 853, 1016, 1153
BspLI	GGNNCC	6 cut(s)	7, 414, 558, 886, 933, 1231
BspT107I	GGYRCC	2 cut(s)	5, 412
BsrDI	GCAATG	1 cut(s)	558
BsrI	ACTGG	5 cut(s)	416, 670, 793, 922, 1141
BssECI	CCNNGG	3 cut(s)	102, 652, 1016
BssMI	GATC	5 cut(s)	73, 838, 1248, 1300, 1307
BssSI	CACGAG	1 cut(s)	47
BssT1I	CCWWGG	3 cut(s)	102, 652, 1016
Bst2BI	CACGAG	1 cut(s)	47
Bst2UI	CCWGG	1 cut(s)	1040
Bst4CI	ACNGT	6 cut(s)	279, 350, 624, 1156, 1352, 1424
BstC8I	GCNNGC	1 cut(s)	1175
BstDSI	CCRYGG	1 cut(s)	1016
BstF5I	GGATG	1 cut(s)	795
BstKTI	GATC	5 cut(s)	76, 841, 1251, 1303, 1310
BstMAI	GTCTC	2 cut(s)	285, 315
BstMBI	GATC	5 cut(s)	73, 838, 1248, 1300, 1307
BstMCI	CGRYCG	1 cut(s)	430
BstMWI	GCNNNNNNNGC	2 cut(s)	135, 1035
BstNI	CCWGG	1 cut(s)	1040
BstSCI	CCNGG	2 cut(s)	726, 1038
BstSFI	CTRYAG	1 cut(s)	133
BstV1I	GCAGC	2 cut(s)	141, 1164
BstV2I	GAAGAC	2 cut(s)	738, 976
BstX2I	RGATCY	1 cut(s)	838
BstXI	CCANNNNNNTGG	1 cut(s)	1148
BstYI	RGATCY	1 cut(s)	838
BsuRI	GGCC	2 cut(s)	1080, 1109
BtgI	CCRYGG	1 cut(s)	1016
BtsCI	GGATG	1 cut(s)	795
BtsIMutI	CAGTG	2 cut(s)	858, 1161
Cac8I	GCNNGC	1 cut(s)	1175
CaiI	CAGNNNCTG	2 cut(s)	1160, 1350
Cfr13I	GGNCC	7 cut(s)	350, 556, 932, 1079, 1229, 1291, 1365
Csp6I	GTAC	5 cut(s)	6, 346, 413, 419, 1425
CviAII	CATG	5 cut(s)	71, 507, 695, 1017, 1369
CviQI	GTAC	5 cut(s)	6, 346, 413, 419, 1425
DpnI	GATC	5 cut(s)	75, 840, 1250, 1302, 1309
DpnII	GATC	5 cut(s)	73, 838, 1248, 1300, 1307
DraI	TTTAAA	1 cut(s)	544
DrdI	GACNNNNNNGTC	1 cut(s)	1195
DseDI	GACNNNNNNGTC	1 cut(s)	1195
EaeI	YGGCCR	1 cut(s)	1107
EciI	GGCGGA	1 cut(s)	174
Ecl136II	GAGCTC	2 cut(s)	763, 1062
Eco130I	CCWWGG	3 cut(s)	102, 652, 1016
Eco24I	GRGCYC	2 cut(s)	765, 1064
Eco47I	GGWCC	6 cut(s)	350, 556, 932, 1229, 1291, 1365
Eco53kI	GAGCTC	2 cut(s)	763, 1062
Eco57I	CTGAAG	1 cut(s)	12
Eco88I	CYCGRG	3 cut(s)	842, 928, 1232
EcoICRI	GAGCTC	2 cut(s)	763, 1062
EcoRII	CCWGG	1 cut(s)	1038
EcoT14I	CCWWGG	3 cut(s)	102, 652, 1016
EcoT38I	GRGCYC	2 cut(s)	765, 1064
ErhI	CCWWGG	3 cut(s)	102, 652, 1016
Esp3I	CGTCTC	2 cut(s)	285, 315
FaeI	CATG	5 cut(s)	74, 510, 698, 1020, 1372
FaqI	GGGAC	3 cut(s)	542, 710, 1338
FatI	CATG	5 cut(s)	70, 506, 694, 1016, 1368
FauI	CCCGC	1 cut(s)	222
FauNDI	CATATG	1 cut(s)	802
FbaI	TGATCA	2 cut(s)	73, 1248
FblI	GTMKAC	1 cut(s)	666
Fnu4HI	GCNGC	4 cut(s)	127, 130, 272, 1178
FokI	GGATG	1 cut(s)	782
FriOI	GRGCYC	2 cut(s)	765, 1064
Fsp4HI	GCNGC	4 cut(s)	127, 130, 272, 1178
FspBI	CTAG	1 cut(s)	611
GluI	GCNGC	4 cut(s)	127, 130, 272, 1178
HaeIII	GGCC	2 cut(s)	1080, 1109
HapII	CCGG	4 cut(s)	410, 585, 728, 1227
Hin1II	CATG	5 cut(s)	74, 510, 698, 1020, 1372
HincII	GTYRAC	2 cut(s)	592, 828
HindII	GTYRAC	2 cut(s)	592, 828
HinfI	GANTC	2 cut(s)	868, 1120
HpaII	CCGG	4 cut(s)	410, 585, 728, 1227
HphI	GGTGA	7 cut(s)	225, 258, 324, 381, 574, 882, 1210
Hpy166II	GTNNAC	5 cut(s)	353, 534, 592, 667, 828
Hpy188I	TCNGA	1 cut(s)	449
Hpy188III	TCNNGA	3 cut(s)	872, 1252, 1273
Hpy8I	GTNNAC	5 cut(s)	353, 534, 592, 667, 828
Hpy99I	CGWCG	1 cut(s)	399
HpyAV	CCTTC	1 cut(s)	77
HpyCH4III	ACNGT	6 cut(s)	279, 350, 624, 1156, 1352, 1424
HpyCH4IV	ACGT	1 cut(s)	1269
HpyCH4V	TGCA	5 cut(s)	67, 528, 551, 1173, 1239
HpyF10VI	GCNNNNNNNGC	2 cut(s)	135, 1035
HpySE526I	ACGT	1 cut(s)	1269
Hsp92II	CATG	5 cut(s)	74, 510, 698, 1020, 1372
KpnI	GGTACC	2 cut(s)	9, 416
Ksp22I	TGATCA	2 cut(s)	73, 1248
Kzo9I	GATC	5 cut(s)	73, 838, 1248, 1300, 1307
LmnI	GCTCC	3 cut(s)	154, 890, 1067
Lsp1109I	GCAGC	2 cut(s)	141, 1164
LweI	GCATC	2 cut(s)	865, 968
MaeI	CTAG	1 cut(s)	611
MaeII	ACGT	1 cut(s)	1269
MaeIII	GTNAC	3 cut(s)	580, 672, 1418
MalI	GATC	5 cut(s)	75, 840, 1250, 1302, 1309
MboI	GATC	5 cut(s)	73, 838, 1248, 1300, 1307
MboII	GAAGA	4 cut(s)	179, 743, 976, 1324
MfeI	CAATTG	1 cut(s)	1279
MflI	RGATCY	1 cut(s)	838
MhlI	GDGCHC	3 cut(s)	403, 765, 1064
MlsI	TGGCCA	1 cut(s)	1109
MluCI	AATT	6 cut(s)	13, 438, 453, 709, 1083, 1279
MluNI	TGGCCA	1 cut(s)	1109
MmeI	TCCRAC	3 cut(s)	278, 729, 1089
Mox20I	TGGCCA	1 cut(s)	1109
MscI	TGGCCA	1 cut(s)	1109
MseI	TTAA	7 cut(s)	456, 543, 747, 1073, 1296, 1415, 1431
Msp20I	TGGCCA	1 cut(s)	1109
MspI	CCGG	4 cut(s)	410, 585, 728, 1227
MspR9I	CCNGG	2 cut(s)	728, 1040
MunI	CAATTG	1 cut(s)	1279
Mva1269I	GAATGC	1 cut(s)	176
MvaI	CCWGG	1 cut(s)	1040
MwoI	GCNNNNNNNGC	2 cut(s)	135, 1035
NciI	CCSGG	1 cut(s)	728
NcoI	CCATGG	1 cut(s)	1016
NdeI	CATATG	1 cut(s)	802
NdeII	GATC	5 cut(s)	73, 838, 1248, 1300, 1307
NlaIII	CATG	5 cut(s)	74, 510, 698, 1020, 1372
NlaIV	GGNNCC	6 cut(s)	7, 414, 558, 886, 933, 1231
NmuCI	GTSAC	1 cut(s)	580
PcsI	WCGNNNNNNNCGW	1 cut(s)	1196
PctI	GAATGC	1 cut(s)	176
PfeI	GAWTC	2 cut(s)	868, 1120
PfoI	TCCNGGA	1 cut(s)	726
PkrI	GCNGC	4 cut(s)	128, 131, 273, 1179
Psp124BI	GAGCTC	2 cut(s)	765, 1064
Psp6I	CCWGG	1 cut(s)	1038
PspGI	CCWGG	1 cut(s)	1038
PspN4I	GGNNCC	6 cut(s)	7, 414, 558, 886, 933, 1231
PspPI	GGNCC	7 cut(s)	350, 556, 932, 1079, 1229, 1291, 1365
PstNI	CAGNNNCTG	2 cut(s)	1160, 1350
PsuI	RGATCY	1 cut(s)	838
RsaI	GTAC	5 cut(s)	7, 347, 414, 420, 1426
RsaNI	GTAC	5 cut(s)	6, 346, 413, 419, 1425
SacI	GAGCTC	2 cut(s)	765, 1064
SaqAI	TTAA	7 cut(s)	456, 543, 747, 1073, 1296, 1415, 1431
SatI	GCNGC	4 cut(s)	127, 130, 272, 1178
Sau3AI	GATC	5 cut(s)	73, 838, 1248, 1300, 1307
Sau96I	GGNCC	7 cut(s)	350, 556, 932, 1079, 1229, 1291, 1365
ScrFI	CCNGG	2 cut(s)	728, 1040
SduI	GDGCHC	3 cut(s)	403, 765, 1064
SfaNI	GCATC	2 cut(s)	865, 968
SfcI	CTRYAG	1 cut(s)	133
SinI	GGWCC	6 cut(s)	350, 556, 932, 1229, 1291, 1365
SmiI	ATTTAAAT	1 cut(s)	544
SpeI	ACTAGT	1 cut(s)	610
Sse9I	AATT	6 cut(s)	13, 438, 453, 709, 1083, 1279
SspMI	CTAG	1 cut(s)	611
SstI	GAGCTC	2 cut(s)	765, 1064
StyD4I	CCNGG	2 cut(s)	726, 1038
StyI	CCWWGG	3 cut(s)	102, 652, 1016
SwaI	ATTTAAAT	1 cut(s)	544
TaaI	ACNGT	6 cut(s)	279, 350, 624, 1156, 1352, 1424
TaiI	ACGT	1 cut(s)	1272
TaqI	TCGA	3 cut(s)	765, 1053, 1199
TaqII	GACCGA	1 cut(s)	444
TasI	AATT	6 cut(s)	13, 438, 453, 709, 1083, 1279
TauI	GCSGC	2 cut(s)	129, 274
TfiI	GAWTC	2 cut(s)	868, 1120
Tru1I	TTAA	7 cut(s)	456, 543, 747, 1073, 1296, 1415, 1431
Tru9I	TTAA	7 cut(s)	456, 543, 747, 1073, 1296, 1415, 1431
TscAI	CASTG	2 cut(s)	865, 1161
TseFI	GTSAC	1 cut(s)	580
TseI	GCWGC	2 cut(s)	129, 1177
Tsp45I	GTSAC	1 cut(s)	580
TspDTI	ATGAA	1 cut(s)	819
TspGWI	ACGGA	3 cut(s)	293, 297, 1434
TspRI	CASTG	2 cut(s)	865, 1161
VpaK11BI	GGWCC	6 cut(s)	350, 556, 932, 1229, 1291, 1365
XmiI	GTMKAC	1 cut(s)	666
XspI	CTAG	1 cut(s)	611

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.