Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0004065

Physical Location & Seq

Genomic Coordinates Forward (+)

10961379 .. 10963812

Gene Structure 2434 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G006850.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGATGAGTTCCAACACATCTTTCTGTGCTTCAATTCTGTTTTCTATCTGTTTCCTCCATTTATGTTTGCAACATGATCAAGTTGAAGCTCAAAAGGGCGGCTTTGCAAGCCCCCGACTTCGAAATGCCTTCAATGTGATTCAAAACTTCAAGTCCAAAATCCAGAGTGACCCTAAAAGAGTCACAGCAACATGGGTTGGCAATAATGTATGCAACTACACGGGCTTTACCTGTGCAGTTGTTCCGGACTTCAAGCAGAGATCGGTTATTGGAGTCGACTTCAATGGTTTCTTGTTTGGCGGCAAAGGTTCCAGGCTCCCCCTCGGTGGCTTCATCGACAAGTTAGACGACTTGGTCTTCTTCCATGCAAACTCCAATAACTTCACAGGCACAGTCCCGCCTGGCACAGCTAAACATCGATTCTTCTATGAGCTCGACCTCAGCAACATAACAAGCTCTCAGGAGCGTTCCCAACAGAAGTTCTTGCTGCCTCGAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2

Protein Analysis

166

Amino Acids

18.51

Weight (kDa)

9.27

Isoelectric Point (pI)

35.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004065)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49750 AT3G19320
fragaria_vesca	FvH4_2g05530
malus_domestica	MD00G1014300.v1.1 MD05G1086700.v1.1
prunus_persica	Prupe.8G131400_v2.0.a1 Prupe.8G131500_v2.0.a1
pyrus_communis	pycom05g08610 pycom10g08130
rosa_chinensis	RchiOBHm_Chr4g0387761 RchiOBHm_Chr6g0255781 RchiOBHm_Chr6g0255841
rosa_laevigata	RLG00000014812 RLG00000014813
rosa_multiflora	Rmu_sc0001163.1_g000027 Rmu_sc0001163.1_g000029 Rmu_sc0004935.1_g000023
rosa_roxburghii	Rroxscaffold_7G00209620 Rroxscaffold_7G00209650
rosa_rugosa	Rorug05G0561500 Rorug05G0561700
rosa_samantha	Rh1AG424200 Rh4BG013200 Rh6AG079500 Rh6AG079800 Rh6BG072600 Rh6BG072700 Rh6CG070700 Rh6CG070800 Rh6DG068000 Rh6DG068100
rosa_wichuraiana	Rw6G006850 Rw6G006880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	353
AccI	GTMKAC	1 cut(s)	276
AccIII	TCCGGA	1 cut(s)	244
AciI	CCGC	3 cut(s)	99, 300, 398
AfiI	CCNNNNNNNGG	1 cut(s)	326
AgsI	TTSAA	7 cut(s)	33, 86, 133, 143, 151, 253, 283
AjnI	CCWGG	2 cut(s)	311, 400
AjuI	GAANNNNNNNTTGG	1 cut(s)	37
AluBI	AGCT	4 cut(s)	89, 410, 433, 456
AluI	AGCT	4 cut(s)	89, 410, 433, 456
Alw21I	GWGCWC	1 cut(s)	435
Aor13HI	TCCGGA	1 cut(s)	244
ApeKI	GCWGC	1 cut(s)	487
AsuII	TTCGAA	1 cut(s)	121
BanII	GRGCYC	1 cut(s)	435
BbsI	GAAGAC	1 cut(s)	349
Bbv12I	GWGCWC	1 cut(s)	435
BbvCI	CCTCAGC	1 cut(s)	440
BbvI	GCAGC	1 cut(s)	474
BciT130I	CCWGG	2 cut(s)	313, 402
BclI	TGATCA	1 cut(s)	76
BisI	GCNGC	3 cut(s)	100, 301, 488
BlsI	GCNGC	3 cut(s)	101, 302, 489
Bme1390I	CCNGG	2 cut(s)	313, 402
BmiI	GGNNCC	2 cut(s)	310, 317
BmrFI	CCNGG	2 cut(s)	313, 402
BpiI	GAAGAC	1 cut(s)	349
Bpu10I	CCTNAGC	1 cut(s)	440
Bpu14I	TTCGAA	1 cut(s)	121
Bsa29I	ATCGAT	1 cut(s)	418
BsaJI	CCNNGG	1 cut(s)	322
BsaWI	WCCGGW	1 cut(s)	244
Bsc4I	CCNNNNNNNGG	1 cut(s)	326
BseAI	TCCGGA	1 cut(s)	244
BseBI	CCWGG	2 cut(s)	313, 402
BseCI	ATCGAT	1 cut(s)	418
BseDI	CCNNGG	1 cut(s)	322
BseLI	CCNNNNNNNGG	1 cut(s)	326
BseMII	CTCAG	2 cut(s)	454, 473
BseXI	GCAGC	1 cut(s)	474
BsgI	GTGCAG	1 cut(s)	255
BshVI	ATCGAT	1 cut(s)	418
BsiHKAI	GWGCWC	1 cut(s)	435
BsiSI	CCGG	1 cut(s)	245
BslFI	GGGAC	1 cut(s)	380
BslI	CCNNNNNNNGG	1 cut(s)	326
BsmFI	GGGAC	1 cut(s)	380
Bsp119I	TTCGAA	1 cut(s)	121
Bsp1286I	GDGCHC	1 cut(s)	435
Bsp13I	TCCGGA	1 cut(s)	244
Bsp143I	GATC	2 cut(s)	76, 260
BspACI	CCGC	3 cut(s)	99, 300, 398
BspCNI	CTCAG	2 cut(s)	453, 472
BspDI	ATCGAT	1 cut(s)	418
BspEI	TCCGGA	1 cut(s)	244
BspLI	GGNNCC	2 cut(s)	310, 317
BspT104I	TTCGAA	1 cut(s)	121
BssECI	CCNNGG	1 cut(s)	322
BssMI	GATC	2 cut(s)	76, 260
Bst2UI	CCWGG	2 cut(s)	313, 402
Bst4CI	ACNGT	1 cut(s)	394
BstBI	TTCGAA	1 cut(s)	121
BstC8I	GCNNGC	1 cut(s)	109
BstDEI	CTNAG	2 cut(s)	440, 459
BstKTI	GATC	2 cut(s)	79, 263
BstMBI	GATC	2 cut(s)	76, 260
BstMWI	GCNNNNNNNGC	1 cut(s)	108
BstNI	CCWGG	2 cut(s)	313, 402
BstSCI	CCNGG	2 cut(s)	311, 400
BstV1I	GCAGC	1 cut(s)	474
BstV2I	GAAGAC	1 cut(s)	349
Bsu15I	ATCGAT	1 cut(s)	418
BsuTUI	ATCGAT	1 cut(s)	418
Cac8I	GCNNGC	1 cut(s)	109
ClaI	ATCGAT	1 cut(s)	418
CviAII	CATG	3 cut(s)	74, 192, 365
CviJI	RGCY	9 cut(s)	89, 102, 111, 225, 316, 330, 410, 433, 456
CviKI_1	RGCY	9 cut(s)	89, 102, 111, 225, 316, 330, 410, 433, 456
DdeI	CTNAG	2 cut(s)	440, 459
DpnI	GATC	2 cut(s)	78, 262
DpnII	GATC	2 cut(s)	76, 260
DrdI	GACNNNNNNGTC	1 cut(s)	353
DseDI	GACNNNNNNGTC	1 cut(s)	353
Ecl136II	GAGCTC	1 cut(s)	433
Eco24I	GRGCYC	1 cut(s)	435
Eco53kI	GAGCTC	1 cut(s)	433
EcoICRI	GAGCTC	1 cut(s)	433
EcoRII	CCWGG	2 cut(s)	311, 400
EcoT38I	GRGCYC	1 cut(s)	435
FaeI	CATG	3 cut(s)	77, 195, 368
FaiI	YATR	7 cut(s)	64, 75, 193, 211, 366, 429, 449
FalI	AAGNNNNNCTT	2 cut(s)	86, 118
FaqI	GGGAC	1 cut(s)	380
FatI	CATG	3 cut(s)	73, 191, 364
FauI	CCCGC	1 cut(s)	405
FbaI	TGATCA	1 cut(s)	76
FblI	GTMKAC	1 cut(s)	276
Fnu4HI	GCNGC	3 cut(s)	100, 301, 488
FriOI	GRGCYC	1 cut(s)	435
Fsp4HI	GCNGC	3 cut(s)	100, 301, 488
GluI	GCNGC	3 cut(s)	100, 301, 488
HapII	CCGG	1 cut(s)	245
Hin1II	CATG	3 cut(s)	77, 195, 368
HincII	GTYRAC	1 cut(s)	277
HindII	GTYRAC	1 cut(s)	277
HinfI	GANTC	4 cut(s)	139, 180, 273, 420
HpaII	CCGG	1 cut(s)	245
Hpy166II	GTNNAC	1 cut(s)	277
Hpy188III	TCNNGA	3 cut(s)	163, 245, 461
Hpy8I	GTNNAC	1 cut(s)	277
HpyAV	CCTTC	1 cut(s)	139
HpyCH4III	ACNGT	1 cut(s)	394
HpyCH4V	TGCA	5 cut(s)	70, 107, 213, 236, 368
HpyF10VI	GCNNNNNNNGC	1 cut(s)	108
HpyF3I	CTNAG	2 cut(s)	440, 459
Hsp92II	CATG	3 cut(s)	77, 195, 368
Kpn2I	TCCGGA	1 cut(s)	244
Ksp22I	TGATCA	1 cut(s)	76
Kzo9I	GATC	2 cut(s)	76, 260
LmnI	GCTCC	2 cut(s)	321, 463
LpnPI	CCDG	9 cut(s)	176, 244, 258, 298, 325, 372, 387, 414, 446
Lsp1109I	GCAGC	1 cut(s)	474
MaeIII	GTNAC	2 cut(s)	167, 181
MalI	GATC	2 cut(s)	78, 262
MboI	GATC	2 cut(s)	76, 260
MboII	GAAGA	3 cut(s)	349, 352, 415
MhlI	GDGCHC	1 cut(s)	435
MluCI	AATT	1 cut(s)	33
MlyI	GAGTC	2 cut(s)	189, 282
MmeI	TCCRAC	1 cut(s)	36
MnlI	CCTC	4 cut(s)	65, 332, 449, 501
MroI	TCCGGA	1 cut(s)	244
MspI	CCGG	1 cut(s)	245
MspR9I	CCNGG	2 cut(s)	313, 402
MvaI	CCWGG	2 cut(s)	313, 402
MwoI	GCNNNNNNNGC	1 cut(s)	108
NdeII	GATC	2 cut(s)	76, 260
NlaIII	CATG	3 cut(s)	77, 195, 368
NlaIV	GGNNCC	2 cut(s)	310, 317
NmuCI	GTSAC	2 cut(s)	167, 181
NspV	TTCGAA	1 cut(s)	121
PfeI	GAWTC	2 cut(s)	139, 420
PflFI	GACNNNGTC	1 cut(s)	353
PkrI	GCNGC	3 cut(s)	101, 302, 489
PleI	GAGTC	2 cut(s)	188, 281
PpsI	GAGTC	2 cut(s)	188, 281
Psp124BI	GAGCTC	1 cut(s)	435
Psp6I	CCWGG	2 cut(s)	311, 400
PspGI	CCWGG	2 cut(s)	311, 400
PspN4I	GGNNCC	2 cut(s)	310, 317
PsyI	GACNNNGTC	1 cut(s)	353
SacI	GAGCTC	1 cut(s)	435
SalI	GTCGAC	1 cut(s)	275
SatI	GCNGC	3 cut(s)	100, 301, 488
Sau3AI	GATC	2 cut(s)	76, 260
SchI	GAGTC	2 cut(s)	189, 282
ScrFI	CCNGG	2 cut(s)	313, 402
SduI	GDGCHC	1 cut(s)	435
SetI	ASST	7 cut(s)	91, 233, 310, 412, 435, 441, 458
SfuI	TTCGAA	1 cut(s)	121
Sse9I	AATT	1 cut(s)	33
SsiI	CCGC	3 cut(s)	99, 300, 398
SstI	GAGCTC	1 cut(s)	435
StyD4I	CCNGG	2 cut(s)	311, 400
TaaI	ACNGT	1 cut(s)	394
TaqI	TCGA	6 cut(s)	121, 276, 336, 418, 435, 493
TasI	AATT	1 cut(s)	33
TauI	GCSGC	2 cut(s)	102, 303
TfiI	GAWTC	2 cut(s)	139, 420
TseFI	GTSAC	2 cut(s)	167, 181
TseI	GCWGC	1 cut(s)	487
Tsp45I	GTSAC	2 cut(s)	167, 181
TspDTI	ATGAA	1 cut(s)	322
Tth111I	GACNNNGTC	1 cut(s)	353
XmiI	GTMKAC	1 cut(s)	276

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.