MD05G1086700.v1.1

At4g06744-like

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
Physical Location & Seq
Reverse (-)
18481133 .. 18484931
3799 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1086700.v1.1.491

Sequence Viewer

Length: 1419 bp
ATGGCTACCTTCTCTTTCTTTTCTTCACTTTTGATCTCAACATTTTTGGTGCATTTATGTTTGTACCATTATAAGGTTGAAGCCTTGGAGATAATCATAGGTGGAGGAGGAGGTGAGGCCAGCCCTCCTGCTCCCTCCCCCGAATACGAAGATTGTCCTCCCCCTCCTCCCCCTCCATGCCCGCCTCCACCATCACTGCCACCACCTCCTCCTCCATCACTGCCATTGCCTCCACCTCCAAAACTACAGTCTCCACCACCGCCACTGCCACCAAAATTACCGCCACCACCTTCCTCCGGCCCCTTTGAAAGCGAGCGACTTGAAGTTGCCTTCAATGTGGTTAAAAGGTTCGTGGCAAAAATCAAGTCCGACCCAAAGGGCTTCGCAAAGACATGGCAAGGTCCAAATGTTTGCAGATACAAGGGCTTTGTCTGCGCCGTTCATCCTGTCTACAAGCAGAAAACAGTGTCTGGTATAGACATCAACGGGGCTATGTTGGGTGGTGACAACAATAAACTTCCACTCGATGGCTTCCTTGACAAGTTAGAAGACTTGGTGTTCTTCCATGCAAACTCCAACAACTTCACAGGCTCAGTCCCGATTGGCACTGCCATGCTTCGATACTTCTACGAGCTCGATCTCAGCAACAACAAGCTATCCGGAGGGTTTCCGTACGAGGTTTTAACAGCAACAAATTTGACATTTTTGGACCTCCGGTTCAACTTCTTTGCCGGTCCAGTCCCAGCCCGAGTCATCAAACTAGACGTTGATGTGCTATTCCTCAACAACAACTGTTTCACTCAGCAGATCCCCGACGATCTTGGCTCCTCACCTGCCCATTACTTCACTTTTGCCAACAACAATTTCACCGGTCCGATCCCAAGAAGCATTGGTCAAGCATCCAGAACCCTTTATGAGGTTCTCTTCCTTGGGAACAAACTTTCAGGGTGTCTGCCTTATGAAATTGGGTACCTAAATCAGGCCACCGTATTCGACGCGAGTTCCAACTGCTTAACAGGCCCAATCCCAGCGTCATTTGCTTGCTTGGCCAAGATTGAGTTTCTAAATTTGGCCAAGAACCAGCTCTATGGACCAGTGCCTGAGATGGTGTGCATGTTGTCTAACCTGGAGAACTTGTCTTTGGCAGACAACTATTTCACAGAGGTCGGTCCAGAGTGCCAGAAATTGATTGACAGAAAGAAACTTGATGTTAGTAGGAACTGCATTTTGGACCAACCAAATCAGAGAATAAACGAGGAATGTGCTACTTTCTTCTCCATGCCTATAAAGTGTCCCAACGAGAAGGAAATGATTAACATTCCTTGTAAAAGACCGTATTCCGGATCAAACGAGAAGAAGTCCGATCATCTGCCACGAGCTCCACTGTCTTACGGTACTCTTGTACCACATAGGCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

473

Amino Acids

51.85

Weight (kDa)

6.4

Isoelectric Point (pI)

54.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 72
AarI CACCTGC 1 cut(s) 841
Acc36I ACCTGC 1 cut(s) 841
Acc65I GGTACC 1 cut(s) 969
AccB1I GGYRCC 1 cut(s) 969
AccB7I CCANNNNNTGG 1 cut(s) 527
AccI GTMKAC 1 cut(s) 450
AccII CGCG 1 cut(s) 998
AccIII TCCGGA 2 cut(s) 659, 1340
AciI CCGC 3 cut(s) 182, 260, 281
AclWI GGATC 3 cut(s) 802, 871, 1351
AcoI YGGCCR 2 cut(s) 1047, 1071
AcsI RAATTY 2 cut(s) 694, 1066
AfaI GTAC 5 cut(s) 65, 674, 971, 1396, 1404
AfiI CCNNNNNNNGG 6 cut(s) 73, 296, 527, 916, 979, 1340
AgeI ACCGGT 1 cut(s) 869
AgsI TTSAA 5 cut(s) 80, 308, 323, 334, 721
AjnI CCWGG 1 cut(s) 1125
AjuI GAANNNNNNNTTGG 6 cut(s) 848, 880, 1124, 1156, 1211, 1243
AloI GAACNNNNNNTCC 2 cut(s) 701, 733
AluBI AGCT 4 cut(s) 634, 655, 1084, 1379
AluI AGCT 4 cut(s) 634, 655, 1084, 1379
Alw21I GWGCWC 2 cut(s) 636, 1381
Alw26I GTCTC 1 cut(s) 255
AlwI GGATC 3 cut(s) 802, 871, 1351
AlwNI CAGNNNCTG 2 cut(s) 470, 1100
Ama87I CYCGRG 1 cut(s) 747
Aor13HI TCCGGA 2 cut(s) 659, 1340
AoxI GGCC 6 cut(s) 117, 298, 981, 1018, 1047, 1071
ApoI RAATTY 2 cut(s) 694, 1066
ArsI GACNNNNNNTTYG 4 cut(s) 233, 265, 350, 382
AsiGI ACCGGT 1 cut(s) 869
Asp718I GGTACC 1 cut(s) 969
AspLEI GCGC 1 cut(s) 437
AspS9I GGNCC 9 cut(s) 299, 401, 709, 734, 872, 1019, 1091, 1169, 1231
AsuHPI GGTGA 4 cut(s) 125, 515, 822, 859
AvaI CYCGRG 1 cut(s) 747
AvaII GGWCC 7 cut(s) 401, 709, 734, 872, 1091, 1169, 1231
BaeI ACNNNNGTAYC 4 cut(s) 1386, 1386, 1419, 1419
BalI TGGCCA 2 cut(s) 1049, 1073
BanI GGYRCC 1 cut(s) 969
BanII GRGCYC 2 cut(s) 636, 1381
BauI CACGAG 1 cut(s) 1374
BbsI GAAGAC 1 cut(s) 555
Bbv12I GWGCWC 2 cut(s) 636, 1381
BccI CCATC 4 cut(s) 199, 223, 521, 1099
BceAI ACGGC 1 cut(s) 422
BcgI CGANNNNNNTGC 2 cut(s) 1244, 1278
BciT130I CCWGG 1 cut(s) 1127
BcoDI GTCTC 1 cut(s) 255
BfaI CTAG 1 cut(s) 761
BfmI CTRYAG 1 cut(s) 245
BfuAI ACCTGC 1 cut(s) 841
Bme1390I CCNGG 1 cut(s) 1127
Bme18I GGWCC 7 cut(s) 401, 709, 734, 872, 1091, 1169, 1231
BmeT110I CYCGRG 1 cut(s) 747
BmgT120I GGNCC 9 cut(s) 299, 401, 709, 734, 872, 1019, 1091, 1169, 1231
BmiI GGNNCC 3 cut(s) 301, 826, 971
BmrFI CCNGG 1 cut(s) 1127
BmsI GCATC 1 cut(s) 908
BpiI GAAGAC 1 cut(s) 555
BpmI CTGGAG 1 cut(s) 1148
BsaJI CCNNGG 2 cut(s) 84, 928
BsaWI WCCGGW 4 cut(s) 659, 714, 869, 1340
BsaXI ACNNNNNCTCC 2 cut(s) 1121, 1151
Bsc4I CCNNNNNNNGG 6 cut(s) 73, 296, 527, 916, 979, 1340
Bse118I RCCGGY 2 cut(s) 731, 869
Bse1I ACTGG 2 cut(s) 737, 1094
Bse3DI GCAATG 1 cut(s) 224
BseAI TCCGGA 2 cut(s) 659, 1340
BseBI CCWGG 1 cut(s) 1127
BseDI CCNNGG 2 cut(s) 84, 928
BseGI GGATG 2 cut(s) 442, 899
BseLI CCNNNNNNNGG 6 cut(s) 73, 296, 527, 916, 979, 1340
BseMI GCAATG 1 cut(s) 224
BseMII CTCAG 4 cut(s) 606, 655, 815, 1092
BseNI ACTGG 2 cut(s) 737, 1094
BseRI GAGGAG 6 cut(s) 120, 123, 156, 198, 201, 817
BseYI CCCAGC 2 cut(s) 742, 1027
Bsh1236I CGCG 1 cut(s) 998
BshFI GGCC 6 cut(s) 119, 300, 983, 1020, 1049, 1073
BshNI GGYRCC 1 cut(s) 969
BshTI ACCGGT 1 cut(s) 869
BsiHKAI GWGCWC 2 cut(s) 636, 1381
BsiHKCI CYCGRG 1 cut(s) 747
BsiSI CCGG 6 cut(s) 297, 660, 715, 732, 870, 1341
BsiWI CGTACG 1 cut(s) 672
BslFI GGGAC 3 cut(s) 581, 725, 1278
BslI CCNNNNNNNGG 6 cut(s) 73, 296, 527, 916, 979, 1340
BsmAI GTCTC 1 cut(s) 255
BsmFI GGGAC 3 cut(s) 581, 725, 1278
BsnI GGCC 6 cut(s) 119, 300, 983, 1020, 1049, 1073
BsoBI CYCGRG 1 cut(s) 747
Bsp1286I GDGCHC 2 cut(s) 636, 1381
Bsp13I TCCGGA 2 cut(s) 659, 1340
Bsp143I GATC 7 cut(s) 33, 637, 807, 817, 876, 1343, 1363
BspACI CCGC 3 cut(s) 182, 260, 281
BspANI GGCC 6 cut(s) 119, 300, 983, 1020, 1049, 1073
BspCNI CTCAG 4 cut(s) 605, 654, 814, 1093
BspEI TCCGGA 2 cut(s) 659, 1340
BspFNI CGCG 1 cut(s) 998
BspLI GGNNCC 3 cut(s) 301, 826, 971
BspMI ACCTGC 1 cut(s) 841
BspPI GGATC 3 cut(s) 802, 871, 1351
BspT107I GGYRCC 1 cut(s) 969
BsrDI GCAATG 1 cut(s) 224
BsrFI RCCGGY 2 cut(s) 731, 869
BsrI ACTGG 2 cut(s) 737, 1094
BssAI RCCGGY 2 cut(s) 731, 869
BssECI CCNNGG 2 cut(s) 84, 928
BssMI GATC 7 cut(s) 33, 637, 807, 817, 876, 1343, 1363
BssSI CACGAG 1 cut(s) 1374
BssT1I CCWWGG 2 cut(s) 84, 928
Bst2BI CACGAG 1 cut(s) 1374
Bst2UI CCWGG 1 cut(s) 1127
Bst4CI ACNGT 7 cut(s) 249, 466, 794, 988, 1335, 1386, 1394
Bst6I CTCTTC 1 cut(s) 929
BstC8I GCNNGC 4 cut(s) 121, 182, 314, 1042
BstDEI CTNAG 4 cut(s) 592, 641, 801, 1101
BstENI CCTNNNNNAGG 2 cut(s) 914, 977
BstF5I GGATG 2 cut(s) 442, 899
BstFNI CGCG 1 cut(s) 998
BstHHI GCGC 1 cut(s) 437
BstKTI GATC 7 cut(s) 36, 640, 810, 820, 879, 1346, 1366
BstMAI GTCTC 1 cut(s) 255
BstMBI GATC 7 cut(s) 33, 637, 807, 817, 876, 1343, 1363
BstMWI GCNNNNNNNGC 4 cut(s) 432, 1017, 1037, 1046
BstNI CCWGG 1 cut(s) 1127
BstNSI RCATGY 1 cut(s) 1117
BstSCI CCNGG 1 cut(s) 1125
BstSFI CTRYAG 1 cut(s) 245
BstUI CGCG 1 cut(s) 998
BstV2I GAAGAC 1 cut(s) 555
BstX2I RGATCY 1 cut(s) 807
BstXI CCANNNNNNTGG 1 cut(s) 1088
BstYI RGATCY 1 cut(s) 807
BsuRI GGCC 6 cut(s) 119, 300, 983, 1020, 1049, 1073
BtsCI GGATG 2 cut(s) 442, 899
BtsI GCAGTG 4 cut(s) 194, 218, 263, 606
BtsIMutI CAGTG 7 cut(s) 194, 218, 263, 471, 606, 1101, 1382
BveI ACCTGC 1 cut(s) 841
Cac8I GCNNGC 4 cut(s) 121, 182, 314, 1042
CaiI CAGNNNCTG 2 cut(s) 470, 1100
CfoI GCGC 1 cut(s) 437
Cfr10I RCCGGY 2 cut(s) 731, 869
Cfr13I GGNCC 9 cut(s) 299, 401, 709, 734, 872, 1019, 1091, 1169, 1231
CpoI CGGWCCG 1 cut(s) 872
CseI GACGC 2 cut(s) 1004, 1020
Csp6I GTAC 5 cut(s) 64, 673, 970, 1395, 1403
CspAI ACCGGT 1 cut(s) 869
CspI CGGWCCG 1 cut(s) 872
CviAII CATG 6 cut(s) 177, 393, 566, 613, 1114, 1279
CviQI GTAC 5 cut(s) 64, 673, 970, 1395, 1403
DdeI CTNAG 4 cut(s) 592, 641, 801, 1101
DpnI GATC 7 cut(s) 35, 639, 809, 819, 878, 1345, 1365
DpnII GATC 7 cut(s) 33, 637, 807, 817, 876, 1343, 1363
EaeI YGGCCR 2 cut(s) 1047, 1071
Eam1104I CTCTTC 1 cut(s) 929
EarI CTCTTC 1 cut(s) 929
Ecl136II GAGCTC 2 cut(s) 634, 1379
Eco130I CCWWGG 2 cut(s) 84, 928
Eco24I GRGCYC 2 cut(s) 636, 1381
Eco47I GGWCC 7 cut(s) 401, 709, 734, 872, 1091, 1169, 1231
Eco53kI GAGCTC 2 cut(s) 634, 1379
Eco88I CYCGRG 1 cut(s) 747
EcoICRI GAGCTC 2 cut(s) 634, 1379
EcoNI CCTNNNNNAGG 2 cut(s) 914, 977
EcoRII CCWGG 1 cut(s) 1125
EcoT14I CCWWGG 2 cut(s) 84, 928
EcoT38I GRGCYC 2 cut(s) 636, 1381
ErhI CCWWGG 2 cut(s) 84, 928
FaeI CATG 6 cut(s) 180, 396, 569, 616, 1117, 1282
FaqI GGGAC 3 cut(s) 581, 725, 1278
FatI CATG 6 cut(s) 176, 392, 565, 612, 1113, 1278
FauI CCCGC 1 cut(s) 189
FblI GTMKAC 1 cut(s) 450
FokI GGATG 2 cut(s) 429, 886
FriOI GRGCYC 2 cut(s) 636, 1381
FspBI CTAG 1 cut(s) 761
GlaI GCGC 1 cut(s) 436
GsaI CCCAGC 2 cut(s) 746, 1031
GsuI CTGGAG 1 cut(s) 1148
HaeIII GGCC 6 cut(s) 119, 300, 983, 1020, 1049, 1073
HapII CCGG 6 cut(s) 297, 660, 715, 732, 870, 1341
HgaI GACGC 2 cut(s) 1004, 1020
HhaI GCGC 1 cut(s) 437
Hin1II CATG 6 cut(s) 180, 396, 569, 616, 1117, 1282
Hin6I GCGC 1 cut(s) 435
HinP1I GCGC 1 cut(s) 435
HinfI GANTC 1 cut(s) 750
HpaII CCGG 6 cut(s) 297, 660, 715, 732, 870, 1341
HphI GGTGA 4 cut(s) 125, 515, 822, 859
Hpy166II GTNNAC 1 cut(s) 451
Hpy188I TCNGA 4 cut(s) 370, 876, 1245, 1363
Hpy188III TCNNGA 5 cut(s) 598, 660, 903, 1172, 1341
Hpy8I GTNNAC 1 cut(s) 451
Hpy99I CGWCG 2 cut(s) 818, 998
HpyAV CCTTC 4 cut(s) 19, 300, 340, 1297
HpyCH4III ACNGT 7 cut(s) 249, 466, 794, 988, 1335, 1386, 1394
HpyCH4IV ACGT 1 cut(s) 765
HpyCH4V TGCA 5 cut(s) 52, 414, 569, 1113, 1224
HpyF10VI GCNNNNNNNGC 4 cut(s) 432, 1017, 1037, 1046
HpyF3I CTNAG 4 cut(s) 592, 641, 801, 1101
HpySE526I ACGT 1 cut(s) 765
Hsp92II CATG 6 cut(s) 180, 396, 569, 616, 1117, 1282
HspAI GCGC 1 cut(s) 435
Kpn2I TCCGGA 2 cut(s) 659, 1340
KpnI GGTACC 1 cut(s) 973
Kzo9I GATC 7 cut(s) 33, 637, 807, 817, 876, 1343, 1363
LmnI GCTCC 3 cut(s) 136, 830, 1384
LweI GCATC 1 cut(s) 908
MaeI CTAG 1 cut(s) 761
MaeII ACGT 1 cut(s) 765
MaeIII GTNAC 1 cut(s) 503
MalI GATC 7 cut(s) 35, 639, 809, 819, 878, 1345, 1365
MboI GATC 7 cut(s) 33, 637, 807, 817, 876, 1343, 1363
MboII GAAGA 7 cut(s) 15, 161, 553, 560, 916, 1264, 1366
MflI RGATCY 1 cut(s) 807
MhlI GDGCHC 2 cut(s) 636, 1381
MlsI TGGCCA 2 cut(s) 1049, 1073
MluCI AATT 6 cut(s) 275, 694, 862, 963, 1066, 1184
MluNI TGGCCA 2 cut(s) 1049, 1073
MlyI GAGTC 1 cut(s) 759
MmeI TCCRAC 3 cut(s) 393, 600, 1029
Mox20I TGGCCA 2 cut(s) 1049, 1073
MroI TCCGGA 2 cut(s) 659, 1340
MscI TGGCCA 2 cut(s) 1049, 1073
MseI TTAA 4 cut(s) 342, 683, 1013, 1314
MslI CAYNNNNRTG 1 cut(s) 611
Msp20I TGGCCA 2 cut(s) 1049, 1073
MspI CCGG 6 cut(s) 297, 660, 715, 732, 870, 1341
MspR9I CCNGG 1 cut(s) 1127
MvaI CCWGG 1 cut(s) 1127
MvnI CGCG 1 cut(s) 998
MwoI GCNNNNNNNGC 4 cut(s) 432, 1017, 1037, 1046
NdeII GATC 7 cut(s) 33, 637, 807, 817, 876, 1343, 1363
NlaIII CATG 6 cut(s) 180, 396, 569, 616, 1117, 1282
NlaIV GGNNCC 3 cut(s) 301, 826, 971
NmuCI GTSAC 1 cut(s) 503
NspI RCATGY 1 cut(s) 1117
PaqCI CACCTGC 1 cut(s) 841
Pfl23II CGTACG 1 cut(s) 672
PflMI CCANNNNNTGG 1 cut(s) 527
PinAI ACCGGT 1 cut(s) 869
PleI GAGTC 1 cut(s) 758
PpsI GAGTC 1 cut(s) 758
PsiI TTATAA 1 cut(s) 72
Psp124BI GAGCTC 2 cut(s) 636, 1381
Psp6I CCWGG 1 cut(s) 1125
PspFI CCCAGC 2 cut(s) 742, 1027
PspGI CCWGG 1 cut(s) 1125
PspLI CGTACG 1 cut(s) 672
PspN4I GGNNCC 3 cut(s) 301, 826, 971
PspPI GGNCC 9 cut(s) 299, 401, 709, 734, 872, 1019, 1091, 1169, 1231
PstNI CAGNNNCTG 2 cut(s) 470, 1100
PsuI RGATCY 1 cut(s) 807
RsaI GTAC 5 cut(s) 65, 674, 971, 1396, 1404
RsaNI GTAC 5 cut(s) 64, 673, 970, 1395, 1403
RseI CAYNNNNRTG 1 cut(s) 611
Rsr2I CGGWCCG 1 cut(s) 872
RsrII CGGWCCG 1 cut(s) 872
SacI GAGCTC 2 cut(s) 636, 1381
SaqAI TTAA 4 cut(s) 342, 683, 1013, 1314
Sau3AI GATC 7 cut(s) 33, 637, 807, 817, 876, 1343, 1363
Sau96I GGNCC 9 cut(s) 299, 401, 709, 734, 872, 1019, 1091, 1169, 1231
SchI GAGTC 1 cut(s) 759
ScrFI CCNGG 1 cut(s) 1127
SduI GDGCHC 2 cut(s) 636, 1381
SfaNI GCATC 1 cut(s) 908
SfcI CTRYAG 1 cut(s) 245
SinI GGWCC 7 cut(s) 401, 709, 734, 872, 1091, 1169, 1231
SmiMI CAYNNNNRTG 1 cut(s) 611
Sse9I AATT 6 cut(s) 275, 694, 862, 963, 1066, 1184
SsiI CCGC 3 cut(s) 182, 260, 281
SspMI CTAG 1 cut(s) 761
SstI GAGCTC 2 cut(s) 636, 1381
StyD4I CCNGG 1 cut(s) 1125
StyI CCWWGG 2 cut(s) 84, 928
TaaI ACNGT 7 cut(s) 249, 466, 794, 988, 1335, 1386, 1394
TaiI ACGT 1 cut(s) 768
TaqI TCGA 4 cut(s) 525, 619, 636, 993
TaqII GACCGA 1 cut(s) 1157
TasI AATT 6 cut(s) 275, 694, 862, 963, 1066, 1184
Tru1I TTAA 4 cut(s) 342, 683, 1013, 1314
Tru9I TTAA 4 cut(s) 342, 683, 1013, 1314
TscAI CASTG 7 cut(s) 201, 225, 270, 471, 613, 1101, 1389
TseFI GTSAC 1 cut(s) 503
Tsp45I GTSAC 1 cut(s) 503
TspDTI ATGAA 2 cut(s) 431, 975
TspGWI ACGGA 1 cut(s) 660
TspRI CASTG 7 cut(s) 201, 225, 270, 471, 613, 1101, 1389
Van91I CCANNNNNTGG 1 cut(s) 527
VpaK11BI GGWCC 7 cut(s) 401, 709, 734, 872, 1091, 1169, 1231
XagI CCTNNNNNAGG 2 cut(s) 914, 977
XapI RAATTY 2 cut(s) 694, 1066
XceI RCATGY 1 cut(s) 1117
XmiI GTMKAC 1 cut(s) 450
XspI CTAG 1 cut(s) 761
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.