Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0004065

Physical Location & Seq

Genomic Coordinates Reverse (-)

65356616 .. 65358855

Gene Structure 2240 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG424200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1764 bp

ATGGGTACCAACAATTCTTTCTTTGCTTCAGTTTTGCTTTCACTACTTCTGCTACATTTGTGTTTGCAACATGATGTAGTTGAAGGGGCTGAAAGAGAAGCCTTGGAAATAATCATTGGTGGTGGCGGCAGCTACAGCCCTTCTCCTGCTCCCTCCGAATACAGCTGCAGCCCTTCTCGTGCTCCCTCCCCCGAATACAGCTACAGCCCTTCTCCTGCTCCCTCCGAATACAGCTGCAGCCCTTCTCCTGCTCCCTCCCCCGAATACAGCTACAGCCCTTCTGCTCCCTCCCCCGAATACAGCTACAGCCCTTCTCCTGCTCCCTCCGAATACAGCTGCAGCCCTTCTCCTGCTCCCTCCCCCGAATACAGCTGCTACAGCCCTTCTCCTGCTCCCTCCGAATACAGCTGCAGCCCTTCTCCTGCTCCCTCCCCCGAATACAGCTACAGCCCTTCTCCTGCTCCCTCCCCCGAATACGAAGAATGCCCTCCCCCTCCGCCTCCTCCTTGCCCGCCGCCACCATTCCCGCCACCGCCACCTCCATCACCACCACCGCCATCACCACCATCACCGCCACCTCCATCACCGCCACCGCCGTCTCCACCACCACCACCACGACCGCGACCGCGACCACCACCCTCTCCGAACACCAGACTTGGAATTGCCCTCCGAGTAATTCGTAAGTTCCAAAAGCTAATCGTCCATGACCCATACCACATCACAGACACATGGAAGGGCAATAATCCTTGCAAATTCAAGGGCTTCACCTGTGCAGTGTTCCCTGACGATAAACAAATGGCAGTCGCCGGAGTTGACTTCAATGGCAAACTGTTGGCCGGCGATGAAACAGCTAAGCAACCCCTTCCCCTTGACGGTTTCCTAGACCAGTTCCAAGAGTTGGTGTTTTTCCATGCCAACTCCAACAATTTCACAGGCTCAGTCCCGAAAGACACATCCAAACTTAAATACTTCTACGAGCTTGACCTCAGCAACAACAAGCTTGATGGGGGTTTCCCATATGAAGTTCTAAGTGCCAAAAAGTTGACATTCTTAGATCTCCGGTTCAACCATTTCCGTGGGTCAGTTCCACCCCATGTGTTCTTCCTGGACGTTGATGTACTCTTCCTCAACAACAACAATTTCATTGAGCAGATTCCTGATGCTCTTGGCTCCTCACCAGCACATTATCTCACTTTTGCCAACAACAAGTTCTGGGGTCCAATCCCAAATAGCATTGGCAAAGCATCAAAAACGCTTTATGAGGTCCTCTTCCTCAACAACCAACTCTCAGGGTGTTTGCCGTGGGAAATCGGCAAACTTAACCAGGCAACCTTGTTCGATGTGAGCACCAACTACTTAACAGGCCCAATACCTCATTCCTTTGCTTGCTTGGCCAAGATGGAGATTCTGGTCTTGGCCAACAACCAGTTCTATGGAACAGTGCCTGAGTTGGTATGCAAGCTGCCCGTCTTGAGGAACTTGTCGTTAGCAAACAACTATTTTACCCAAGTCGGACCGGAGTGCAGAAAACTGATCAATAAAGGGTTTCTCAACGTCAAGAACAATTGTATCTTGGACCTTAAAGATCAAAGATCAAAGAGTGATTGTGCTTGGTTCTTCTCTAAGGCTACACAGTGTCCCAACGAGCGGTCCATGTTTTACATTCCTTGTCAAACGCACTATTCAAATGAGAAGAAGCCTGAACATCGAGGACAAGCTTCTGCCCCATTAAGTTATGGCACTCTTAAACCGCATAATCCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2

Protein Analysis

587

Amino Acids

64.28

Weight (kDa)

6.2

Isoelectric Point (pI)

78.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004065)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49750 AT3G19320
fragaria_vesca	FvH4_2g05530
malus_domestica	MD00G1014300.v1.1 MD05G1086700.v1.1
prunus_persica	Prupe.8G131400_v2.0.a1 Prupe.8G131500_v2.0.a1
pyrus_communis	pycom05g08610 pycom10g08130
rosa_chinensis	RchiOBHm_Chr4g0387761 RchiOBHm_Chr6g0255781 RchiOBHm_Chr6g0255841
rosa_laevigata	RLG00000014812 RLG00000014813
rosa_multiflora	Rmu_sc0001163.1_g000027 Rmu_sc0001163.1_g000029 Rmu_sc0004935.1_g000023
rosa_roxburghii	Rroxscaffold_7G00209620 Rroxscaffold_7G00209650
rosa_rugosa	Rorug05G0561500 Rorug05G0561700
rosa_samantha	Rh1AG424200 Rh4BG013200 Rh6AG079500 Rh6AG079800 Rh6BG072600 Rh6BG072700 Rh6CG070700 Rh6CG070800 Rh6DG068000 Rh6DG068100
rosa_wichuraiana	Rw6G006850 Rw6G006880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	5
AccB1I	GGYRCC	1 cut(s)	5
AccB7I	CCANNNNNTGG	1 cut(s)	898
AccBSI	CCGCTC	1 cut(s)	1648
AccII	CGCG	2 cut(s)	622, 628
AcoI	YGGCCR	3 cut(s)	834, 1392, 1416
AcsI	RAATTY	1 cut(s)	752
AcuI	CTGAAG	1 cut(s)	12
AfaI	GTAC	2 cut(s)	7, 1119
AfiI	CCNNNNNNNGG	4 cut(s)	872, 898, 1473, 1647
AgsI	TTSAA	5 cut(s)	83, 757, 820, 1066, 1686
AjnI	CCWGG	2 cut(s)	1104, 1323
AjuI	GAANNNNNNNTTGG	9 cut(s)	34, 99, 131, 1193, 1225, 1360, 1392, 1412, 1444
Alw21I	GWGCWC	2 cut(s)	184, 1349
Alw26I	GTCTC	1 cut(s)	603
AlwNI	CAGNNNCTG	1 cut(s)	1445
AoxI	GGCC	4 cut(s)	834, 1363, 1392, 1416
ApoI	RAATTY	1 cut(s)	752
Asp718I	GGTACC	1 cut(s)	5
AspS9I	GGNCC	6 cut(s)	1217, 1264, 1364, 1514, 1576, 1650
AsuHPI	GGTGA	6 cut(s)	537, 552, 561, 576, 757, 1167
AvaII	GGWCC	5 cut(s)	1217, 1264, 1514, 1576, 1650
BaeI	ACNNNNGTAYC	2 cut(s)	1552, 1585
BalI	TGGCCA	2 cut(s)	1394, 1418
BanI	GGYRCC	1 cut(s)	5
BauI	CACGAG	1 cut(s)	177
Bbv12I	GWGCWC	2 cut(s)	184, 1349
BbvCI	CCTCAGC	1 cut(s)	986
BccI	CCATC	6 cut(s)	550, 565, 574, 589, 998, 1393
BceAI	ACGGC	2 cut(s)	580, 1285
BciT130I	CCWGG	2 cut(s)	1106, 1325
BclI	TGATCA	1 cut(s)	1533
BcoDI	GTCTC	1 cut(s)	603
BfaI	CTAG	1 cut(s)	881
BglII	AGATCT	1 cut(s)	1054
BlpI	GCTNAGC	1 cut(s)	852
Bme1390I	CCNGG	2 cut(s)	1106, 1325
Bme18I	GGWCC	5 cut(s)	1217, 1264, 1514, 1576, 1650
BmgT120I	GGNCC	6 cut(s)	1217, 1264, 1364, 1514, 1576, 1650
BmiI	GGNNCC	3 cut(s)	7, 1171, 1218
BmrFI	CCNGG	2 cut(s)	1106, 1325
BmsI	GCATC	2 cut(s)	1150, 1253
Bpu10I	CCTNAGC	1 cut(s)	986
Bpu1102I	GCTNAGC	1 cut(s)	852
BpuEI	CTTGAG	1 cut(s)	1492
BsaJI	CCNNGG	3 cut(s)	102, 1075, 1301
BsaWI	WCCGGW	2 cut(s)	1059, 1516
Bsc4I	CCNNNNNNNGG	4 cut(s)	872, 898, 1473, 1647
Bse118I	RCCGGY	1 cut(s)	836
Bse1I	ACTGG	2 cut(s)	886, 1426
BseBI	CCWGG	2 cut(s)	1106, 1325
BseDI	CCNNGG	3 cut(s)	102, 1075, 1301
BseGI	GGATG	1 cut(s)	953
BseLI	CCNNNNNNNGG	4 cut(s)	872, 898, 1473, 1647
BseMII	CTCAG	4 cut(s)	951, 1000, 1302, 1437
BseNI	ACTGG	2 cut(s)	886, 1426
BseRI	GAGGAG	2 cut(s)	492, 1162
BsgI	GTGCAG	2 cut(s)	792, 1543
Bsh1236I	CGCG	2 cut(s)	622, 628
Bsh1285I	CGRYCG	2 cut(s)	620, 626
BshFI	GGCC	4 cut(s)	836, 1365, 1394, 1418
BshNI	GGYRCC	1 cut(s)	5
BsiEI	CGRYCG	2 cut(s)	620, 626
BsiHKAI	GWGCWC	2 cut(s)	184, 1349
BsiSI	CCGG	4 cut(s)	807, 837, 1060, 1517
BslFI	GGGAC	2 cut(s)	926, 1623
BslI	CCNNNNNNNGG	4 cut(s)	872, 898, 1473, 1647
BsmAI	GTCTC	1 cut(s)	603
BsmBI	CGTCTC	1 cut(s)	603
BsmFI	GGGAC	2 cut(s)	926, 1623
BsmI	GAATGC	1 cut(s)	488
BsnI	GGCC	4 cut(s)	836, 1365, 1394, 1418
Bsp1286I	GDGCHC	2 cut(s)	184, 1349
Bsp143I	GATC	4 cut(s)	1054, 1533, 1585, 1592
Bsp1720I	GCTNAGC	1 cut(s)	852
BspANI	GGCC	4 cut(s)	836, 1365, 1394, 1418
BspCNI	CTCAG	4 cut(s)	950, 999, 1301, 1438
BspFNI	CGCG	2 cut(s)	622, 628
BspLI	GGNNCC	3 cut(s)	7, 1171, 1218
BspMAI	CTGCAG	4 cut(s)	170, 239, 341, 413
BspT107I	GGYRCC	1 cut(s)	5
BsrBI	CCGCTC	1 cut(s)	1648
BsrFI	RCCGGY	1 cut(s)	836
BsrI	ACTGG	2 cut(s)	886, 1426
BssAI	RCCGGY	1 cut(s)	836
BssECI	CCNNGG	3 cut(s)	102, 1075, 1301
BssMI	GATC	4 cut(s)	1054, 1533, 1585, 1592
BssSI	CACGAG	1 cut(s)	177
BssT1I	CCWWGG	1 cut(s)	102
Bst2BI	CACGAG	1 cut(s)	177
Bst2UI	CCWGG	2 cut(s)	1106, 1325
Bst4CI	ACNGT	4 cut(s)	831, 875, 1441, 1635
Bst6I	CTCTTC	2 cut(s)	1127, 1274
BstC8I	GCNNGC	4 cut(s)	512, 838, 1387, 1460
BstDEI	CTNAG	8 cut(s)	852, 937, 986, 1028, 1051, 1288, 1446, 1623
BstDSI	CCRYGG	2 cut(s)	1075, 1301
BstF5I	GGATG	1 cut(s)	953
BstFNI	CGCG	2 cut(s)	622, 628
BstKTI	GATC	4 cut(s)	1057, 1536, 1588, 1595
BstMAI	GTCTC	1 cut(s)	603
BstMBI	GATC	4 cut(s)	1054, 1533, 1585, 1592
BstMCI	CGRYCG	2 cut(s)	620, 626
BstMWI	GCNNNNNNNGC	3 cut(s)	135, 378, 1391
BstNI	CCWGG	2 cut(s)	1106, 1325
BstSCI	CCNGG	2 cut(s)	1104, 1323
BstUI	CGCG	2 cut(s)	622, 628
BstX2I	RGATCY	1 cut(s)	1054
BstXI	CCANNNNNNTGG	2 cut(s)	1076, 1433
BstYI	RGATCY	1 cut(s)	1054
BsuRI	GGCC	4 cut(s)	836, 1365, 1394, 1418
BtgI	CCRYGG	2 cut(s)	1075, 1301
BtgZI	GCGATG	1 cut(s)	855
BtsCI	GGATG	1 cut(s)	953
BtsI	GCAGTG	1 cut(s)	780
BtsIMutI	CAGTG	3 cut(s)	780, 1446, 1640
Cac8I	GCNNGC	4 cut(s)	512, 838, 1387, 1460
CaiI	CAGNNNCTG	1 cut(s)	1445
Cfr10I	RCCGGY	1 cut(s)	836
Cfr13I	GGNCC	6 cut(s)	1217, 1264, 1364, 1514, 1576, 1650
CpoI	CGGWCCG	1 cut(s)	1514
Csp6I	GTAC	2 cut(s)	6, 1118
CspI	CGGWCCG	1 cut(s)	1514
CviAII	CATG	6 cut(s)	71, 704, 729, 911, 1094, 1654
CviQI	GTAC	2 cut(s)	6, 1118
DdeI	CTNAG	8 cut(s)	852, 937, 986, 1028, 1051, 1288, 1446, 1623
DpnI	GATC	4 cut(s)	1056, 1535, 1587, 1594
DpnII	GATC	4 cut(s)	1054, 1533, 1585, 1592
EaeI	YGGCCR	3 cut(s)	834, 1392, 1416
Eam1104I	CTCTTC	2 cut(s)	1127, 1274
EarI	CTCTTC	2 cut(s)	1127, 1274
EciI	GGCGGA	1 cut(s)	486
Eco130I	CCWWGG	1 cut(s)	102
Eco47I	GGWCC	5 cut(s)	1217, 1264, 1514, 1576, 1650
Eco57I	CTGAAG	1 cut(s)	12
EcoO109I	RGGNCCY	1 cut(s)	1264
EcoRII	CCWGG	2 cut(s)	1104, 1323
EcoT14I	CCWWGG	1 cut(s)	102
ErhI	CCWWGG	1 cut(s)	102
Esp3I	CGTCTC	1 cut(s)	603
FaeI	CATG	6 cut(s)	74, 707, 732, 914, 1097, 1657
FaqI	GGGAC	2 cut(s)	926, 1623
FatI	CATG	6 cut(s)	70, 703, 728, 910, 1093, 1653
FauI	CCCGC	2 cut(s)	519, 534
FauNDI	CATATG	1 cut(s)	1018
FbaI	TGATCA	1 cut(s)	1533
FokI	GGATG	1 cut(s)	940
FspBI	CTAG	1 cut(s)	881
HaeIII	GGCC	4 cut(s)	836, 1365, 1394, 1418
HapII	CCGG	4 cut(s)	807, 837, 1060, 1517
Hin1II	CATG	6 cut(s)	74, 707, 732, 914, 1097, 1657
HincII	GTYRAC	2 cut(s)	814, 1044
HindII	GTYRAC	2 cut(s)	814, 1044
HindIII	AAGCTT	2 cut(s)	998, 1716
HinfI	GANTC	2 cut(s)	1153, 1405
HpaII	CCGG	4 cut(s)	807, 837, 1060, 1517
HphI	GGTGA	6 cut(s)	537, 552, 561, 576, 757, 1167
Hpy166II	GTNNAC	2 cut(s)	814, 1044
Hpy188I	TCNGA	7 cut(s)	157, 226, 328, 400, 645, 671, 1514
Hpy188III	TCNNGA	4 cut(s)	943, 1157, 1471, 1558
Hpy8I	GTNNAC	2 cut(s)	814, 1044
HpyCH4III	ACNGT	4 cut(s)	831, 875, 1441, 1635
HpyCH4IV	ACGT	2 cut(s)	1110, 1554
HpyCH4V	TGCA	9 cut(s)	67, 168, 237, 339, 411, 750, 773, 1458, 1524
HpyF10VI	GCNNNNNNNGC	3 cut(s)	135, 378, 1391
HpyF3I	CTNAG	8 cut(s)	852, 937, 986, 1028, 1051, 1288, 1446, 1623
HpySE526I	ACGT	2 cut(s)	1110, 1554
Hsp92II	CATG	6 cut(s)	74, 707, 732, 914, 1097, 1657
KpnI	GGTACC	1 cut(s)	9
KroI	GCCGGC	1 cut(s)	836
KroNI	GCCGGC	1 cut(s)	838
Ksp22I	TGATCA	1 cut(s)	1533
Kzo9I	GATC	4 cut(s)	1054, 1533, 1585, 1592
LweI	GCATC	2 cut(s)	1150, 1253
MaeI	CTAG	1 cut(s)	881
MaeII	ACGT	2 cut(s)	1110, 1554
MalI	GATC	4 cut(s)	1056, 1535, 1587, 1594
MbiI	CCGCTC	1 cut(s)	1648
MboI	GATC	4 cut(s)	1054, 1533, 1585, 1592
MboII	GAAGA	6 cut(s)	491, 1093, 1114, 1261, 1609, 1705
MfeI	CAATTG	1 cut(s)	1564
MflI	RGATCY	1 cut(s)	1054
MhlI	GDGCHC	2 cut(s)	184, 1349
MlsI	TGGCCA	2 cut(s)	1394, 1418
MluCI	AATT	7 cut(s)	13, 660, 675, 752, 925, 1138, 1564
MluNI	TGGCCA	2 cut(s)	1394, 1418
MmeI	TCCRAC	2 cut(s)	945, 1492
Mox20I	TGGCCA	2 cut(s)	1394, 1418
MroNI	GCCGGC	1 cut(s)	836
MscI	TGGCCA	2 cut(s)	1394, 1418
MseI	TTAA	6 cut(s)	963, 1320, 1358, 1581, 1730, 1746
MslI	CAYNNNNRTG	1 cut(s)	1074
Msp20I	TGGCCA	2 cut(s)	1394, 1418
MspA1I	CMGCKG	5 cut(s)	165, 234, 336, 372, 408
MspI	CCGG	4 cut(s)	807, 837, 1060, 1517
MspR9I	CCNGG	2 cut(s)	1106, 1325
MunI	CAATTG	1 cut(s)	1564
Mva1269I	GAATGC	1 cut(s)	488
MvaI	CCWGG	2 cut(s)	1106, 1325
MvnI	CGCG	2 cut(s)	622, 628
MwoI	GCNNNNNNNGC	3 cut(s)	135, 378, 1391
NaeI	GCCGGC	1 cut(s)	838
NdeI	CATATG	1 cut(s)	1018
NdeII	GATC	4 cut(s)	1054, 1533, 1585, 1592
NgoMIV	GCCGGC	1 cut(s)	836
NlaIII	CATG	6 cut(s)	74, 707, 732, 914, 1097, 1657
NlaIV	GGNNCC	3 cut(s)	7, 1171, 1218
PctI	GAATGC	1 cut(s)	488
PdiI	GCCGGC	1 cut(s)	838
PfeI	GAWTC	2 cut(s)	1153, 1405
PflMI	CCANNNNNTGG	1 cut(s)	898
PfoI	TCCNGGA	1 cut(s)	1104
PpuMI	RGGWCCY	1 cut(s)	1264
Psp5II	RGGWCCY	1 cut(s)	1264
Psp6I	CCWGG	2 cut(s)	1104, 1323
PspGI	CCWGG	2 cut(s)	1104, 1323
PspN4I	GGNNCC	3 cut(s)	7, 1171, 1218
PspPI	GGNCC	6 cut(s)	1217, 1264, 1364, 1514, 1576, 1650
PspPPI	RGGWCCY	1 cut(s)	1264
PstI	CTGCAG	4 cut(s)	170, 239, 341, 413
PstNI	CAGNNNCTG	1 cut(s)	1445
PsuI	RGATCY	1 cut(s)	1054
PvuII	CAGCTG	5 cut(s)	165, 234, 336, 372, 408
RsaI	GTAC	2 cut(s)	7, 1119
RsaNI	GTAC	2 cut(s)	6, 1118
RseI	CAYNNNNRTG	1 cut(s)	1074
Rsr2I	CGGWCCG	1 cut(s)	1514
RsrII	CGGWCCG	1 cut(s)	1514
SaqAI	TTAA	6 cut(s)	963, 1320, 1358, 1581, 1730, 1746
Sau3AI	GATC	4 cut(s)	1054, 1533, 1585, 1592
Sau96I	GGNCC	6 cut(s)	1217, 1264, 1364, 1514, 1576, 1650
ScrFI	CCNGG	2 cut(s)	1106, 1325
SduI	GDGCHC	2 cut(s)	184, 1349
SfaNI	GCATC	2 cut(s)	1150, 1253
SinI	GGWCC	5 cut(s)	1217, 1264, 1514, 1576, 1650
SmiMI	CAYNNNNRTG	1 cut(s)	1074
SmlI	CTYRAG	1 cut(s)	1471
SmoI	CTYRAG	1 cut(s)	1471
Sse9I	AATT	7 cut(s)	13, 660, 675, 752, 925, 1138, 1564
SspMI	CTAG	1 cut(s)	881
StyD4I	CCNGG	2 cut(s)	1104, 1323
StyI	CCWWGG	1 cut(s)	102
TaaI	ACNGT	4 cut(s)	831, 875, 1441, 1635
TaiI	ACGT	2 cut(s)	1113, 1557
TaqI	TCGA	2 cut(s)	1338, 1708
TasI	AATT	7 cut(s)	13, 660, 675, 752, 925, 1138, 1564
TatI	WGTACW	1 cut(s)	1117
TauI	GCSGC	2 cut(s)	129, 517
TfiI	GAWTC	2 cut(s)	1153, 1405
Tru1I	TTAA	6 cut(s)	963, 1320, 1358, 1581, 1730, 1746
Tru9I	TTAA	6 cut(s)	963, 1320, 1358, 1581, 1730, 1746
TscAI	CASTG	3 cut(s)	780, 1446, 1640
TspDTI	ATGAA	3 cut(s)	858, 1035, 1132
TspGWI	ACGGA	2 cut(s)	1064, 1749
TspRI	CASTG	3 cut(s)	780, 1446, 1640
Van91I	CCANNNNNTGG	1 cut(s)	898
VpaK11BI	GGWCC	5 cut(s)	1217, 1264, 1514, 1576, 1650
XapI	RAATTY	1 cut(s)	752
XspI	CTAG	1 cut(s)	881

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.