AT3G19320

Leucine-rich repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0004065
Physical Location & Seq
Reverse (-)
6696301 .. 6698184
1884 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G19320.1

Sequence Viewer

Length: 1482 bp
ATGGCCCCAAATTATTATCCTTCCATTTTCTTGATTCTGTCTGTTCACTTTCTTTCAATTCTAGCCACCGGAAACAACCACAACACCTACAGAAAATCTCTCGAAATCATCATCGGCGGTGGCAGTGATAGCACCAATTACAATTCTCCTGCGCCATCTCCGGAGCCAGAAGACTATCTTCCGCTGCCTCCTCCTCCTCAAACGCCACCACCCCCGCCGCCACCACAGTCACTCCCTCCTCCATCCCCATCTCCGGAGCCTGAACACTATCCTCCCCCTCCTTATCATCATTATATAACACCATCACCACCGCCACCACGGCCACTTCCTCCTCCACCGCCACCGCCGCTACATTTCTCAAGCCCATTAATAAAGAAAGTTTATCCAGTCATCAAGAATTTCCAGACGCTAATCGAAGATGATCCAAAGAGCATACTTAAAACATGGGTAGGCACCGACATTTGCGCTCAGGACAAATACATAGGACTCGAGTGCGCCAAGTTACCGGGAACAAACGACCTCGCACTTGCCAGCATTCAGTTCAACAATTTTAACTTGGGTGGCAAGAAACTCCGGCTAGATAACTTCCTCAACAAGTTAGAAGAAGTCACCATCTTTCACGCAAACAGTAACAATTTTGTGGGCTCTGTTCCAAACTTCAGCAAATTGAAGTACCTTTTCGAGCTTGATCTCAGCAACAATAAGCTCTCTGGAGAGTTCCCAAGCTCTGTGTTAAAAGCAACGAACCTCACGTTTCTCGATCTCAGATTCAATTCTTTCTCCGGTTCTGTCCCTCCTCAGGTTTTCAATCTAGACCTCGACGTATTGTTCATCAACAACAACAATCTTGTTCAGAGACTCCCTGAAAATCTTGGATCGATCACCGCTCTTTACCTCACATTCGCTAATAACAGATTCACAGGTCCTATTCCGGGAAGCATTGGTGACATCAAGTCCCTACAAGAAGTCCTTTTCTTGAATAACAAGTTAACTGGTTGCTTACCGTACCAAATTGGGAACCTTAACCGAGCTACGGTTTTCGATGTTGAGTTAAACCAGTTAACCGGTCCGATTCCGTACTCTTTCGGATGCCTAAAGAAGATGGAGCAGCTGAATTTGGCTAGAAACAATTTCTACGGTACTATACCGGAGATTGTCTGCGAGCTCTCAGCCCTCAAGAACCTTTCTCTCTCGTACAATTACTTCACACAGGTCGGTCCAAAATGTCGAACACTCATCAAGAGGAAGATTCTTGATGTGGGTATGAATTGTATTCTAGATCTTACGAATCAAAGAACACCATGGGAATGCGCCAAGTTTTTCTTGCGGAAACAGAGTTGTCCTAACTTTAAGTCTTTCTTTTATCTCCCTTGTGGCAAAGATCCCCACCGGATTAAACCGGATCAAGAAGGATCAGACGGTCAGGCTTCGCCACCGGTATCTTACAATGCTCTTAACCCAGACCGGATTCGGAATCTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2

Protein Analysis

493

Amino Acids

54.97

Weight (kDa)

8.39

Isoelectric Point (pI)

50.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 452
AccBSI CCGCTC 1 cut(s) 887
AccIII TCCGGA 2 cut(s) 160, 253
AclWI GGATC 5 cut(s) 416, 883, 1376, 1410, 1420
AcoI YGGCCR 1 cut(s) 320
AcsI RAATTY 2 cut(s) 397, 1114
AcuI CTGAAG 1 cut(s) 643
AfaI GTAC 5 cut(s) 674, 1007, 1079, 1141, 1196
AfiI CCNNNNNNNGG 4 cut(s) 253, 799, 932, 1033
AgeI ACCGGT 2 cut(s) 1064, 1435
AgsI TTSAA 6 cut(s) 57, 544, 670, 772, 808, 979
AhdI GACNNNNNGTC 1 cut(s) 952
AluBI AGCT 6 cut(s) 685, 706, 726, 1031, 1111, 1165
AluI AGCT 6 cut(s) 685, 706, 726, 1031, 1111, 1165
Alw21I GWGCWC 1 cut(s) 1167
Alw26I GTCTC 1 cut(s) 850
AlwI GGATC 5 cut(s) 416, 883, 1376, 1410, 1420
Ama87I CYCGRG 1 cut(s) 488
Aor13HI TCCGGA 2 cut(s) 160, 253
AoxI GGCC 2 cut(s) 3, 320
ApeKI GCWGC 2 cut(s) 184, 1108
ApoI RAATTY 2 cut(s) 397, 1114
AseI ATTAAT 1 cut(s) 368
AsiGI ACCGGT 2 cut(s) 1064, 1435
AspLEI GCGC 4 cut(s) 154, 467, 497, 1313
AspS9I GGNCC 4 cut(s) 4, 923, 1067, 1217
AsuC2I CCSGG 2 cut(s) 507, 933
AsuHPI GGTGA 4 cut(s) 297, 601, 874, 956
AvaI CYCGRG 1 cut(s) 488
AvaII GGWCC 3 cut(s) 923, 1067, 1217
AxyI CCTNAGG 1 cut(s) 798
BanI GGYRCC 1 cut(s) 452
BanII GRGCYC 2 cut(s) 647, 1167
BarI GAAGNNNNNNTAC 2 cut(s) 1187, 1219
BbsI GAAGAC 1 cut(s) 177
Bbv12I GWGCWC 1 cut(s) 1167
BbvI GCAGC 2 cut(s) 171, 1120
BccI CCATC 6 cut(s) 163, 250, 256, 310, 620, 1096
BceAI ACGGC 1 cut(s) 335
BcnI CCSGG 2 cut(s) 507, 933
BcoDI GTCTC 1 cut(s) 850
BfaI CTAG 6 cut(s) 62, 578, 812, 1122, 1277, 1480
BfmI CTRYAG 1 cut(s) 88
BglI GCCNNNNNGGC 1 cut(s) 319
BglII AGATCT 1 cut(s) 1279
BisI GCNGC 4 cut(s) 185, 218, 347, 1109
BlsI GCNGC 4 cut(s) 186, 219, 348, 1110
Bme1390I CCNGG 2 cut(s) 507, 933
Bme18I GGWCC 3 cut(s) 923, 1067, 1217
BmeRI GACNNNNNGTC 1 cut(s) 952
BmeT110I CYCGRG 1 cut(s) 488
BmgT120I GGNCC 4 cut(s) 4, 923, 1067, 1217
BmiI GGNNCC 5 cut(s) 6, 165, 258, 454, 1019
BmrFI CCNGG 2 cut(s) 507, 933
BmsI GCATC 1 cut(s) 1079
BpiI GAAGAC 1 cut(s) 177
BpmI CTGGAG 1 cut(s) 732
Bpu10I CCTNAGC 1 cut(s) 468
BpuEI CTTGAG 2 cut(s) 343, 1160
BpuMI CCSGG 2 cut(s) 507, 933
Bsa29I ATCGAT 1 cut(s) 878
BsaJI CCNNGG 2 cut(s) 317, 1301
BsaXI ACNNNNNCTCC 2 cut(s) 216, 246
Bsc4I CCNNNNNNNGG 4 cut(s) 253, 799, 932, 1033
Bse118I RCCGGY 2 cut(s) 1064, 1435
Bse1I ACTGG 3 cut(s) 386, 997, 1057
Bse21I CCTNAGG 1 cut(s) 798
BseAI TCCGGA 2 cut(s) 160, 253
BseCI ATCGAT 1 cut(s) 878
BseDI CCNNGG 2 cut(s) 317, 1301
BseGI GGATG 2 cut(s) 242, 1094
BseLI CCNNNNNNNGG 4 cut(s) 253, 799, 932, 1033
BseMII CTCAG 5 cut(s) 482, 706, 778, 812, 1182
BseNI ACTGG 3 cut(s) 386, 997, 1057
BseRI GAGGAG 6 cut(s) 180, 183, 186, 228, 321, 786
BseXI GCAGC 2 cut(s) 171, 1120
BshFI GGCC 2 cut(s) 5, 322
BshNI GGYRCC 1 cut(s) 452
BshTI ACCGGT 2 cut(s) 1064, 1435
BshVI ATCGAT 1 cut(s) 878
BsiHKAI GWGCWC 1 cut(s) 1167
BsiHKCI CYCGRG 1 cut(s) 488
BslFI GGGAC 2 cut(s) 776, 940
BslI CCNNNNNNNGG 4 cut(s) 253, 799, 932, 1033
BsmAI GTCTC 1 cut(s) 850
BsmFI GGGAC 2 cut(s) 776, 940
BsmI GAATGC 2 cut(s) 534, 1313
BsnI GGCC 2 cut(s) 5, 322
BsoBI CYCGRG 1 cut(s) 488
Bsp1286I GDGCHC 2 cut(s) 647, 1167
Bsp13I TCCGGA 2 cut(s) 160, 253
Bsp143I GATC 9 cut(s) 421, 688, 760, 875, 879, 1279, 1381, 1402, 1412
Bsp19I CCATGG 1 cut(s) 1301
BspANI GGCC 2 cut(s) 5, 322
BspCNI CTCAG 5 cut(s) 481, 705, 777, 811, 1181
BspDI ATCGAT 1 cut(s) 878
BspEI TCCGGA 2 cut(s) 160, 253
BspLI GGNNCC 5 cut(s) 6, 165, 258, 454, 1019
BspPI GGATC 5 cut(s) 416, 883, 1376, 1410, 1420
BspT107I GGYRCC 1 cut(s) 452
BsrBI CCGCTC 1 cut(s) 887
BsrFI RCCGGY 2 cut(s) 1064, 1435
BsrI ACTGG 3 cut(s) 386, 997, 1057
BssAI RCCGGY 2 cut(s) 1064, 1435
BssECI CCNNGG 2 cut(s) 317, 1301
BssMI GATC 9 cut(s) 421, 688, 760, 875, 879, 1279, 1381, 1402, 1412
BssT1I CCWWGG 1 cut(s) 1301
Bst4CI ACNGT 6 cut(s) 228, 629, 1005, 1036, 1139, 1421
BstC8I GCNNGC 2 cut(s) 532, 1163
BstDEI CTNAG 5 cut(s) 468, 692, 764, 798, 1168
BstDSI CCRYGG 2 cut(s) 317, 1301
BstF5I GGATG 2 cut(s) 242, 1094
BstHHI GCGC 4 cut(s) 154, 467, 497, 1313
BstKTI GATC 9 cut(s) 424, 691, 763, 878, 882, 1282, 1384, 1405, 1415
BstMAI GTCTC 1 cut(s) 850
BstMBI GATC 9 cut(s) 421, 688, 760, 875, 879, 1279, 1381, 1402, 1412
BstMWI GCNNNNNNNGC 3 cut(s) 129, 319, 346
BstSCI CCNGG 2 cut(s) 505, 931
BstSFI CTRYAG 1 cut(s) 88
BstV1I GCAGC 2 cut(s) 171, 1120
BstV2I GAAGAC 1 cut(s) 177
BstX2I RGATCY 2 cut(s) 1279, 1381
BstYI RGATCY 2 cut(s) 1279, 1381
Bsu15I ATCGAT 1 cut(s) 878
Bsu36I CCTNAGG 1 cut(s) 798
BsuRI GGCC 2 cut(s) 5, 322
BsuTUI ATCGAT 1 cut(s) 878
BtgI CCRYGG 2 cut(s) 317, 1301
BtsCI GGATG 2 cut(s) 242, 1094
BtsI GCAGTG 1 cut(s) 130
BtsIMutI CAGTG 1 cut(s) 130
Cac8I GCNNGC 2 cut(s) 532, 1163
CfoI GCGC 4 cut(s) 154, 467, 497, 1313
Cfr10I RCCGGY 2 cut(s) 1064, 1435
Cfr13I GGNCC 4 cut(s) 4, 923, 1067, 1217
ClaI ATCGAT 1 cut(s) 878
CpoI CGGWCCG 1 cut(s) 1067
CseI GACGC 1 cut(s) 415
Csp6I GTAC 5 cut(s) 673, 1006, 1078, 1140, 1195
CspAI ACCGGT 2 cut(s) 1064, 1435
CspI CGGWCCG 1 cut(s) 1067
CviAII CATG 2 cut(s) 444, 1302
CviQI GTAC 5 cut(s) 673, 1006, 1078, 1140, 1195
DdeI CTNAG 5 cut(s) 468, 692, 764, 798, 1168
DpnI GATC 9 cut(s) 423, 690, 762, 877, 881, 1281, 1383, 1404, 1414
DpnII GATC 9 cut(s) 421, 688, 760, 875, 879, 1279, 1381, 1402, 1412
DriI GACNNNNNGTC 1 cut(s) 952
EaeI YGGCCR 1 cut(s) 320
Eam1105I GACNNNNNGTC 1 cut(s) 952
Ecl136II GAGCTC 1 cut(s) 1165
Eco130I CCWWGG 1 cut(s) 1301
Eco24I GRGCYC 2 cut(s) 647, 1167
Eco47I GGWCC 3 cut(s) 923, 1067, 1217
Eco53kI GAGCTC 1 cut(s) 1165
Eco57I CTGAAG 1 cut(s) 643
Eco81I CCTNAGG 1 cut(s) 798
Eco88I CYCGRG 1 cut(s) 488
EcoICRI GAGCTC 1 cut(s) 1165
EcoO109I RGGNCCY 1 cut(s) 923
EcoT14I CCWWGG 1 cut(s) 1301
EcoT38I GRGCYC 2 cut(s) 647, 1167
ErhI CCWWGG 1 cut(s) 1301
FaeI CATG 2 cut(s) 447, 1305
FaiI YATR 8 cut(s) 294, 296, 434, 445, 482, 1145, 1265, 1303
FalI AAGNNNNNCTT 8 cut(s) 162, 194, 954, 986, 1307, 1339, 1343, 1375
FaqI GGGAC 2 cut(s) 776, 940
FatI CATG 2 cut(s) 443, 1301
FauI CCCGC 1 cut(s) 222
Fnu4HI GCNGC 4 cut(s) 185, 218, 347, 1109
FokI GGATG 2 cut(s) 229, 1101
FriOI GRGCYC 2 cut(s) 647, 1167
Fsp4HI GCNGC 4 cut(s) 185, 218, 347, 1109
FspBI CTAG 6 cut(s) 62, 578, 812, 1122, 1277, 1480
GlaI GCGC 4 cut(s) 153, 466, 496, 1312
GluI GCNGC 4 cut(s) 185, 218, 347, 1109
GsuI CTGGAG 1 cut(s) 732
HaeIII GGCC 2 cut(s) 5, 322
HgaI GACGC 1 cut(s) 415
HhaI GCGC 4 cut(s) 154, 467, 497, 1313
Hin1II CATG 2 cut(s) 447, 1305
Hin6I GCGC 4 cut(s) 152, 465, 495, 1311
HinP1I GCGC 4 cut(s) 152, 465, 495, 1311
HincII GTYRAC 2 cut(s) 990, 1062
HindII GTYRAC 2 cut(s) 990, 1062
HpaI GTTAAC 2 cut(s) 990, 1062
HphI GGTGA 4 cut(s) 297, 601, 874, 956
Hpy166II GTNNAC 3 cut(s) 46, 990, 1062
Hpy188I TCNGA 6 cut(s) 767, 855, 1071, 1088, 1417, 1473
Hpy8I GTNNAC 3 cut(s) 46, 990, 1062
Hpy99I CGWCG 1 cut(s) 824
HpyAV CCTTC 2 cut(s) 30, 1403
HpyCH4III ACNGT 6 cut(s) 228, 629, 1005, 1036, 1139, 1421
HpyCH4IV ACGT 2 cut(s) 752, 822
HpyF10VI GCNNNNNNNGC 3 cut(s) 129, 319, 346
HpyF3I CTNAG 5 cut(s) 468, 692, 764, 798, 1168
HpySE526I ACGT 2 cut(s) 752, 822
Hsp92II CATG 2 cut(s) 447, 1305
HspAI GCGC 4 cut(s) 152, 465, 495, 1311
Kpn2I TCCGGA 2 cut(s) 160, 253
KspAI GTTAAC 2 cut(s) 990, 1062
Kzo9I GATC 9 cut(s) 421, 688, 760, 875, 879, 1279, 1381, 1402, 1412
LmnI GCTCC 3 cut(s) 163, 256, 1105
Lsp1109I GCAGC 2 cut(s) 171, 1120
LweI GCATC 1 cut(s) 1079
MaeI CTAG 6 cut(s) 62, 578, 812, 1122, 1277, 1480
MaeII ACGT 2 cut(s) 752, 822
MaeIII GTNAC 5 cut(s) 228, 501, 607, 629, 944
MalI GATC 9 cut(s) 423, 690, 762, 877, 881, 1281, 1383, 1404, 1414
MbiI CCGCTC 1 cut(s) 887
MboI GATC 9 cut(s) 421, 688, 760, 875, 879, 1279, 1381, 1402, 1412
MboII GAAGA 6 cut(s) 170, 182, 428, 614, 1111, 1258
MflI RGATCY 2 cut(s) 1279, 1381
MhlI GDGCHC 2 cut(s) 647, 1167
MlyI GAGTC 2 cut(s) 480, 852
MroI TCCGGA 2 cut(s) 160, 253
MslI CAYNNNNRTG 1 cut(s) 1306
MspA1I CMGCKG 2 cut(s) 184, 1111
MspR9I CCNGG 2 cut(s) 507, 933
Mva1269I GAATGC 2 cut(s) 534, 1313
MwoI GCNNNNNNNGC 3 cut(s) 129, 319, 346
NciI CCSGG 2 cut(s) 507, 933
NcoI CCATGG 1 cut(s) 1301
NdeII GATC 9 cut(s) 421, 688, 760, 875, 879, 1279, 1381, 1402, 1412
NlaIII CATG 2 cut(s) 447, 1305
NlaIV GGNNCC 5 cut(s) 6, 165, 258, 454, 1019
NmuCI GTSAC 3 cut(s) 228, 607, 944
PaeR7I CTCGAG 1 cut(s) 488
PcsI WCGNNNNNNNCGW 1 cut(s) 749
PctI GAATGC 2 cut(s) 534, 1313
PfeI GAWTC 8 cut(s) 34, 768, 915, 1072, 1249, 1288, 1468, 1474
PfoI TCCNGGA 1 cut(s) 931
PinAI ACCGGT 2 cut(s) 1064, 1435
PkrI GCNGC 4 cut(s) 186, 219, 348, 1110
PleI GAGTC 2 cut(s) 480, 852
PpsI GAGTC 2 cut(s) 480, 852
PpuMI RGGWCCY 1 cut(s) 923
PshBI ATTAAT 1 cut(s) 368
Psp124BI GAGCTC 1 cut(s) 1167
Psp5II RGGWCCY 1 cut(s) 923
PspN4I GGNNCC 5 cut(s) 6, 165, 258, 454, 1019
PspPI GGNCC 4 cut(s) 4, 923, 1067, 1217
PspPPI RGGWCCY 1 cut(s) 923
PspXI VCTCGAGB 1 cut(s) 488
PsuI RGATCY 2 cut(s) 1279, 1381
PvuII CAGCTG 1 cut(s) 1111
RsaI GTAC 5 cut(s) 674, 1007, 1079, 1141, 1196
RsaNI GTAC 5 cut(s) 673, 1006, 1078, 1140, 1195
RseI CAYNNNNRTG 1 cut(s) 1306
Rsr2I CGGWCCG 1 cut(s) 1067
RsrII CGGWCCG 1 cut(s) 1067
SacI GAGCTC 1 cut(s) 1167
SatI GCNGC 4 cut(s) 185, 218, 347, 1109
Sau3AI GATC 9 cut(s) 421, 688, 760, 875, 879, 1279, 1381, 1402, 1412
Sau96I GGNCC 4 cut(s) 4, 923, 1067, 1217
SchI GAGTC 2 cut(s) 480, 852
ScrFI CCNGG 2 cut(s) 507, 933
SduI GDGCHC 2 cut(s) 647, 1167
SfaNI GCATC 1 cut(s) 1079
SfcI CTRYAG 1 cut(s) 88
Sfr274I CTCGAG 1 cut(s) 488
SinI GGWCC 3 cut(s) 923, 1067, 1217
SlaI CTCGAG 1 cut(s) 488
SmiMI CAYNNNNRTG 1 cut(s) 1306
SmlI CTYRAG 3 cut(s) 358, 488, 1175
SmoI CTYRAG 3 cut(s) 358, 488, 1175
SspMI CTAG 6 cut(s) 62, 578, 812, 1122, 1277, 1480
SstI GAGCTC 1 cut(s) 1167
StyD4I CCNGG 2 cut(s) 505, 931
StyI CCWWGG 1 cut(s) 1301
TaaI ACNGT 6 cut(s) 228, 629, 1005, 1036, 1139, 1421
TaiI ACGT 2 cut(s) 755, 825
TaqI TCGA 9 cut(s) 102, 414, 489, 681, 759, 819, 878, 1041, 1228
TaqII GACCGA 1 cut(s) 1205
TauI GCSGC 2 cut(s) 220, 349
TfiI GAWTC 8 cut(s) 34, 768, 915, 1072, 1249, 1288, 1468, 1474
TscAI CASTG 1 cut(s) 130
TseFI GTSAC 3 cut(s) 228, 607, 944
TseI GCWGC 2 cut(s) 184, 1108
Tsp45I GTSAC 3 cut(s) 228, 607, 944
TspDTI ATGAA 2 cut(s) 820, 1280
TspGWI ACGGA 1 cut(s) 1065
TspRI CASTG 1 cut(s) 130
VpaK11BI GGWCC 3 cut(s) 923, 1067, 1217
VspI ATTAAT 1 cut(s) 368
XapI RAATTY 2 cut(s) 397, 1114
XbaI TCTAGA 2 cut(s) 811, 1276
XhoI CTCGAG 1 cut(s) 488
XspI CTAG 6 cut(s) 62, 578, 812, 1122, 1277, 1480
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.