Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0004065

Physical Location & Seq

Genomic Coordinates Reverse (-)

1792248 .. 1795585

Gene Structure 3338 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG013200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1428 bp

ATGGGTACCAACAATTCTTTCTTTGCTTCAGTTTTGCTTTCACTACTCGTGCTACATTTGTGTTTGCAACATGATCTAGTTGAAGGTGCTGAAAGAGAAGCCCTGGAAATAATCATTGGTGGTGGCGGCAGCTACAGCCCTCCTCCTGCTCCCTCCCCCGAATACGAAGAATGCCCTCCCCCTCCGCCTCCTCCTTGCCCACCGCCACCTCCATCACCACCACCGCCATCACTTCCACCACCTCCATCACCGCCGCCACCAAAACTCCGTCCGTCTCCACCACCACCATCTCCATCACCGCCACCGCCGTCTCCACCACCACGACCACGACCACGACCACGACCACGACCACGACCACCTCCACCATCACCACGACGAGCACACTCTCCGGTACCAGTACCAAACGACCGACTTGGAATTGCCCTCAGAGTAATTAAAAAGTTCAAAGACCTAATCGGGTATGACCCAAAAAACATCACAGGCACATGGGTCGGCACAAATCCTTGCAAGTTCACGGGATTTAAATGTGCAATGGTCCCTGTCTATAACCAAATGGCAGTCACCGAAGTTGACTTCAATGGCAAAGGACTAGTTGGCAAACCGTTCGGTGGCAAAGATATAAAGCTACCCCTTGGCGGTTTCGTAGACCAGTTACCAGACTTGGTGTTTTTCCATGCCAACTCCAACAATTTCACAGGCTCAGTCCCGAAAGAAATATCCAAACTTAAATACTTCTACGAGCTCGACCTCAGCAACAACAAGCTAACTGGGAACATCCCATATGAAGTTCTAAGTGCCACAAAGTTGACATTCTTAGATCTCGGGTTCAACTTTTTCACTGAGCAGATTCCTGATGCTATTGGCTCCTCACCAGCACATTATCTCACTTTTGCCAACAACCAGTTCTCGGGTCCAATCCCAAATAGCATTGGCAAAGCATCAAAAACGCTTTATGAGGTCCTCTTCCTCAACAACAAACTCTCAGGGTGTTTGCCATGGGAAATCGGCAAACTTAGCCAGGCAACCTTGTTCGATGTGAGCTCCAACTACTTAACAGGCCCAATTCCTCATTCCTTTGCTTGCTTGGCCAAGATGGAGATTCTGGTCTTGGACAATAACCAGTTCTATGGAACAGTGCCTGAGTTGGTATGCAAGCTGCCCACCTTGACGAACTTGTCGATAGCAAACAACTATTTCACCCAAGCCGGACCCGAGTGCAGAAAACTGATCAAGAAAGGGTTTCTCAACGTCAAGAACAATTGTATCTTGGACCTTAAAGATCAAAGATCAAAGAGTGATTGTGCTTGGTTCTTCTCTAAGCCCAGAAACTGTCCCAACGAGCGGTCCATGATTTACATTCCTTGTCAAAATCACTATTCAACTTCTGCCCCATTAAGTTACGGTACTCTTAAACCGCATAATCCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2

Protein Analysis

475

Amino Acids

51.97

Weight (kDa)

9.03

Isoelectric Point (pI)

56.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004065)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49750 AT3G19320
fragaria_vesca	FvH4_2g05530
malus_domestica	MD00G1014300.v1.1 MD05G1086700.v1.1
prunus_persica	Prupe.8G131400_v2.0.a1 Prupe.8G131500_v2.0.a1
pyrus_communis	pycom05g08610 pycom10g08130
rosa_chinensis	RchiOBHm_Chr4g0387761 RchiOBHm_Chr6g0255781 RchiOBHm_Chr6g0255841
rosa_laevigata	RLG00000014812 RLG00000014813
rosa_multiflora	Rmu_sc0001163.1_g000027 Rmu_sc0001163.1_g000029 Rmu_sc0004935.1_g000023
rosa_roxburghii	Rroxscaffold_7G00209620 Rroxscaffold_7G00209650
rosa_rugosa	Rorug05G0561500 Rorug05G0561700
rosa_samantha	Rh1AG424200 Rh4BG013200 Rh6AG079500 Rh6AG079800 Rh6BG072600 Rh6BG072700 Rh6CG070700 Rh6CG070800 Rh6DG068000 Rh6DG068100
rosa_wichuraiana	Rw6G006850 Rw6G006880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1174
Acc65I	GGTACC	2 cut(s)	5, 391
AccB1I	GGYRCC	2 cut(s)	5, 391
AccBSI	CCGCTC	1 cut(s)	1342
AccI	GTMKAC	1 cut(s)	645
AcoI	YGGCCR	1 cut(s)	1086
AcuI	CTGAAG	1 cut(s)	12
AfaI	GTAC	4 cut(s)	7, 393, 399, 1405
AfiI	CCNNNNNNNGG	4 cut(s)	608, 635, 907, 1341
AgsI	TTSAA	5 cut(s)	83, 445, 577, 829, 1380
AhlI	ACTAGT	1 cut(s)	589
AjnI	CCWGG	2 cut(s)	102, 1017
AjuI	GAANNNNNNNTTGG	7 cut(s)	34, 99, 131, 887, 919, 1054, 1086
AluBI	AGCT	6 cut(s)	132, 625, 742, 763, 1041, 1156
AluI	AGCT	6 cut(s)	132, 625, 742, 763, 1041, 1156
Alw21I	GWGCWC	3 cut(s)	382, 744, 1043
Alw26I	GTCTC	2 cut(s)	279, 315
AlwNI	CAGNNNCTG	2 cut(s)	1139, 1329
Ama87I	CYCGRG	3 cut(s)	821, 907, 1211
AoxI	GGCC	2 cut(s)	1057, 1086
ApeKI	GCWGC	2 cut(s)	129, 1156
Asp718I	GGTACC	2 cut(s)	5, 391
AspS9I	GGNCC	7 cut(s)	535, 911, 958, 1058, 1208, 1270, 1344
AsuHPI	GGTGA	7 cut(s)	207, 240, 288, 360, 553, 861, 1189
AvaI	CYCGRG	3 cut(s)	821, 907, 1211
AvaII	GGWCC	6 cut(s)	535, 911, 958, 1208, 1270, 1344
BaeI	ACNNNNGTAYC	2 cut(s)	1246, 1279
BalI	TGGCCA	1 cut(s)	1088
BanI	GGYRCC	2 cut(s)	5, 391
BanII	GRGCYC	2 cut(s)	744, 1043
BauI	CACGAG	1 cut(s)	47
Bbv12I	GWGCWC	3 cut(s)	382, 744, 1043
BbvCI	CCTCAGC	1 cut(s)	749
BbvI	GCAGC	2 cut(s)	141, 1143
BccI	CCATC	7 cut(s)	220, 235, 253, 295, 301, 373, 1087
BceAI	ACGGC	1 cut(s)	292
BcgI	CGANNNNNNTGC	4 cut(s)	472, 506, 586, 620
BciT130I	CCWGG	2 cut(s)	104, 1019
BclI	TGATCA	1 cut(s)	1227
BcoDI	GTCTC	2 cut(s)	279, 315
BcuI	ACTAGT	1 cut(s)	589
BfaI	CTAG	2 cut(s)	77, 590
BfmI	CTRYAG	1 cut(s)	133
BglII	AGATCT	1 cut(s)	817
BisI	GCNGC	4 cut(s)	127, 130, 254, 1157
BlsI	GCNGC	4 cut(s)	128, 131, 255, 1158
Bme1390I	CCNGG	2 cut(s)	104, 1019
Bme18I	GGWCC	6 cut(s)	535, 911, 958, 1208, 1270, 1344
BmeT110I	CYCGRG	3 cut(s)	821, 907, 1211
BmgT120I	GGNCC	7 cut(s)	535, 911, 958, 1058, 1208, 1270, 1344
BmiI	GGNNCC	6 cut(s)	7, 393, 537, 865, 912, 1210
BmrFI	CCNGG	2 cut(s)	104, 1019
BmrI	ACTGGG	1 cut(s)	777
BmsI	GCATC	2 cut(s)	844, 947
BmuI	ACTGGG	1 cut(s)	777
Bpu10I	CCTNAGC	1 cut(s)	749
BsaJI	CCNNGG	3 cut(s)	102, 631, 995
BsaWI	WCCGGW	1 cut(s)	388
BsaXI	ACNNNNNCTCC	2 cut(s)	249, 279
Bsc4I	CCNNNNNNNGG	4 cut(s)	608, 635, 907, 1341
Bse1I	ACTGG	5 cut(s)	395, 649, 772, 901, 1120
Bse3DI	GCAATG	1 cut(s)	537
BseBI	CCWGG	2 cut(s)	104, 1019
BseDI	CCNNGG	3 cut(s)	102, 631, 995
BseGI	GGATG	1 cut(s)	774
BseLI	CCNNNNNNNGG	4 cut(s)	608, 635, 907, 1341
BseMI	GCAATG	1 cut(s)	537
BseMII	CTCAG	6 cut(s)	439, 714, 763, 831, 996, 1131
BseNI	ACTGG	5 cut(s)	395, 649, 772, 901, 1120
BseRI	GAGGAG	3 cut(s)	132, 180, 856
BseXI	GCAGC	2 cut(s)	141, 1143
BsgI	GTGCAG	1 cut(s)	1237
Bsh1285I	CGRYCG	1 cut(s)	409
BshFI	GGCC	2 cut(s)	1059, 1088
BshNI	GGYRCC	2 cut(s)	5, 391
BsiEI	CGRYCG	1 cut(s)	409
BsiHKAI	GWGCWC	3 cut(s)	382, 744, 1043
BsiHKCI	CYCGRG	3 cut(s)	821, 907, 1211
BsiSI	CCGG	2 cut(s)	389, 1206
BslFI	GGGAC	3 cut(s)	521, 689, 1317
BslI	CCNNNNNNNGG	4 cut(s)	608, 635, 907, 1341
BsmAI	GTCTC	2 cut(s)	279, 315
BsmBI	CGTCTC	2 cut(s)	279, 315
BsmFI	GGGAC	3 cut(s)	521, 689, 1317
BsmI	GAATGC	1 cut(s)	176
BsnI	GGCC	2 cut(s)	1059, 1088
BsoBI	CYCGRG	3 cut(s)	821, 907, 1211
Bsp1286I	GDGCHC	3 cut(s)	382, 744, 1043
Bsp143I	GATC	5 cut(s)	73, 817, 1227, 1279, 1286
Bsp19I	CCATGG	1 cut(s)	995
BspANI	GGCC	2 cut(s)	1059, 1088
BspCNI	CTCAG	6 cut(s)	438, 713, 762, 832, 995, 1132
BspLI	GGNNCC	6 cut(s)	7, 393, 537, 865, 912, 1210
BspT107I	GGYRCC	2 cut(s)	5, 391
BsrBI	CCGCTC	1 cut(s)	1342
BsrDI	GCAATG	1 cut(s)	537
BsrI	ACTGG	5 cut(s)	395, 649, 772, 901, 1120
BssECI	CCNNGG	3 cut(s)	102, 631, 995
BssMI	GATC	5 cut(s)	73, 817, 1227, 1279, 1286
BssSI	CACGAG	1 cut(s)	47
BssT1I	CCWWGG	2 cut(s)	631, 995
Bst2BI	CACGAG	1 cut(s)	47
Bst2UI	CCWGG	2 cut(s)	104, 1019
Bst4CI	ACNGT	4 cut(s)	603, 1135, 1331, 1403
Bst6I	CTCTTC	1 cut(s)	968
BstC8I	GCNNGC	2 cut(s)	1081, 1154
BstDSI	CCRYGG	1 cut(s)	995
BstF5I	GGATG	1 cut(s)	774
BstKTI	GATC	5 cut(s)	76, 820, 1230, 1282, 1289
BstMAI	GTCTC	2 cut(s)	279, 315
BstMBI	GATC	5 cut(s)	73, 817, 1227, 1279, 1286
BstMCI	CGRYCG	1 cut(s)	409
BstMWI	GCNNNNNNNGC	3 cut(s)	135, 1014, 1085
BstNI	CCWGG	2 cut(s)	104, 1019
BstSCI	CCNGG	2 cut(s)	102, 1017
BstSFI	CTRYAG	1 cut(s)	133
BstV1I	GCAGC	2 cut(s)	141, 1143
BstX2I	RGATCY	1 cut(s)	817
BstXI	CCANNNNNNTGG	1 cut(s)	1127
BstYI	RGATCY	1 cut(s)	817
BsuRI	GGCC	2 cut(s)	1059, 1088
BtgI	CCRYGG	1 cut(s)	995
BtsCI	GGATG	1 cut(s)	774
BtsIMutI	CAGTG	2 cut(s)	837, 1140
Cac8I	GCNNGC	2 cut(s)	1081, 1154
CaiI	CAGNNNCTG	2 cut(s)	1139, 1329
Cfr13I	GGNCC	7 cut(s)	535, 911, 958, 1058, 1208, 1270, 1344
Csp6I	GTAC	4 cut(s)	6, 392, 398, 1404
CviAII	CATG	5 cut(s)	71, 486, 674, 996, 1348
CviQI	GTAC	4 cut(s)	6, 392, 398, 1404
DpnI	GATC	5 cut(s)	75, 819, 1229, 1281, 1288
DpnII	GATC	5 cut(s)	73, 817, 1227, 1279, 1286
DraI	TTTAAA	1 cut(s)	523
DrdI	GACNNNNNNGTC	1 cut(s)	1174
DseDI	GACNNNNNNGTC	1 cut(s)	1174
EaeI	YGGCCR	1 cut(s)	1086
Eam1104I	CTCTTC	1 cut(s)	968
EarI	CTCTTC	1 cut(s)	968
EciI	GGCGGA	1 cut(s)	174
Ecl136II	GAGCTC	2 cut(s)	742, 1041
Eco130I	CCWWGG	2 cut(s)	631, 995
Eco24I	GRGCYC	2 cut(s)	744, 1043
Eco47I	GGWCC	6 cut(s)	535, 911, 958, 1208, 1270, 1344
Eco53kI	GAGCTC	2 cut(s)	742, 1041
Eco57I	CTGAAG	1 cut(s)	12
Eco88I	CYCGRG	3 cut(s)	821, 907, 1211
EcoICRI	GAGCTC	2 cut(s)	742, 1041
EcoO109I	RGGNCCY	1 cut(s)	958
EcoRII	CCWGG	2 cut(s)	102, 1017
EcoT14I	CCWWGG	2 cut(s)	631, 995
EcoT38I	GRGCYC	2 cut(s)	744, 1043
ErhI	CCWWGG	2 cut(s)	631, 995
Esp3I	CGTCTC	2 cut(s)	279, 315
FaeI	CATG	5 cut(s)	74, 489, 677, 999, 1351
FaqI	GGGAC	3 cut(s)	521, 689, 1317
FatI	CATG	5 cut(s)	70, 485, 673, 995, 1347
FauNDI	CATATG	1 cut(s)	781
FbaI	TGATCA	1 cut(s)	1227
FblI	GTMKAC	1 cut(s)	645
Fnu4HI	GCNGC	4 cut(s)	127, 130, 254, 1157
FokI	GGATG	1 cut(s)	761
FriOI	GRGCYC	2 cut(s)	744, 1043
Fsp4HI	GCNGC	4 cut(s)	127, 130, 254, 1157
FspBI	CTAG	2 cut(s)	77, 590
GluI	GCNGC	4 cut(s)	127, 130, 254, 1157
HaeIII	GGCC	2 cut(s)	1059, 1088
HapII	CCGG	2 cut(s)	389, 1206
Hin1II	CATG	5 cut(s)	74, 489, 677, 999, 1351
HincII	GTYRAC	2 cut(s)	571, 807
HindII	GTYRAC	2 cut(s)	571, 807
HinfI	GANTC	2 cut(s)	847, 1099
HpaII	CCGG	2 cut(s)	389, 1206
HphI	GGTGA	7 cut(s)	207, 240, 288, 360, 553, 861, 1189
Hpy166II	GTNNAC	4 cut(s)	513, 571, 646, 807
Hpy188I	TCNGA	1 cut(s)	428
Hpy188III	TCNNGA	4 cut(s)	706, 851, 1231, 1252
Hpy8I	GTNNAC	4 cut(s)	513, 571, 646, 807
Hpy99I	CGWCG	1 cut(s)	378
HpyAV	CCTTC	1 cut(s)	77
HpyCH4III	ACNGT	4 cut(s)	603, 1135, 1331, 1403
HpyCH4IV	ACGT	1 cut(s)	1248
HpyCH4V	TGCA	5 cut(s)	67, 507, 530, 1152, 1218
HpyF10VI	GCNNNNNNNGC	3 cut(s)	135, 1014, 1085
HpySE526I	ACGT	1 cut(s)	1248
Hsp92II	CATG	5 cut(s)	74, 489, 677, 999, 1351
KpnI	GGTACC	2 cut(s)	9, 395
Ksp22I	TGATCA	1 cut(s)	1227
Kzo9I	GATC	5 cut(s)	73, 817, 1227, 1279, 1286
LmnI	GCTCC	3 cut(s)	154, 869, 1046
Lsp1109I	GCAGC	2 cut(s)	141, 1143
LweI	GCATC	2 cut(s)	844, 947
MaeI	CTAG	2 cut(s)	77, 590
MaeII	ACGT	1 cut(s)	1248
MaeIII	GTNAC	3 cut(s)	559, 651, 1397
MalI	GATC	5 cut(s)	75, 819, 1229, 1281, 1288
MbiI	CCGCTC	1 cut(s)	1342
MboI	GATC	5 cut(s)	73, 817, 1227, 1279, 1286
MboII	GAAGA	3 cut(s)	179, 955, 1303
MfeI	CAATTG	1 cut(s)	1258
MflI	RGATCY	1 cut(s)	817
MhlI	GDGCHC	3 cut(s)	382, 744, 1043
MlsI	TGGCCA	1 cut(s)	1088
MluCI	AATT	6 cut(s)	13, 417, 432, 688, 1062, 1258
MluNI	TGGCCA	1 cut(s)	1088
MmeI	TCCRAC	2 cut(s)	708, 1068
Mox20I	TGGCCA	1 cut(s)	1088
MscI	TGGCCA	1 cut(s)	1088
MseI	TTAA	7 cut(s)	435, 522, 726, 1052, 1275, 1394, 1410
Msp20I	TGGCCA	1 cut(s)	1088
MspI	CCGG	2 cut(s)	389, 1206
MspR9I	CCNGG	2 cut(s)	104, 1019
MunI	CAATTG	1 cut(s)	1258
Mva1269I	GAATGC	1 cut(s)	176
MvaI	CCWGG	2 cut(s)	104, 1019
MwoI	GCNNNNNNNGC	3 cut(s)	135, 1014, 1085
NcoI	CCATGG	1 cut(s)	995
NdeI	CATATG	1 cut(s)	781
NdeII	GATC	5 cut(s)	73, 817, 1227, 1279, 1286
NlaIII	CATG	5 cut(s)	74, 489, 677, 999, 1351
NlaIV	GGNNCC	6 cut(s)	7, 393, 537, 865, 912, 1210
NmuCI	GTSAC	1 cut(s)	559
PcsI	WCGNNNNNNNCGW	1 cut(s)	1175
PctI	GAATGC	1 cut(s)	176
PfeI	GAWTC	2 cut(s)	847, 1099
PkrI	GCNGC	4 cut(s)	128, 131, 255, 1158
PpuMI	RGGWCCY	1 cut(s)	958
Psp124BI	GAGCTC	2 cut(s)	744, 1043
Psp5II	RGGWCCY	1 cut(s)	958
Psp6I	CCWGG	2 cut(s)	102, 1017
PspGI	CCWGG	2 cut(s)	102, 1017
PspN4I	GGNNCC	6 cut(s)	7, 393, 537, 865, 912, 1210
PspPI	GGNCC	7 cut(s)	535, 911, 958, 1058, 1208, 1270, 1344
PspPPI	RGGWCCY	1 cut(s)	958
PstNI	CAGNNNCTG	2 cut(s)	1139, 1329
PsuI	RGATCY	1 cut(s)	817
RsaI	GTAC	4 cut(s)	7, 393, 399, 1405
RsaNI	GTAC	4 cut(s)	6, 392, 398, 1404
SacI	GAGCTC	2 cut(s)	744, 1043
SaqAI	TTAA	7 cut(s)	435, 522, 726, 1052, 1275, 1394, 1410
SatI	GCNGC	4 cut(s)	127, 130, 254, 1157
Sau3AI	GATC	5 cut(s)	73, 817, 1227, 1279, 1286
Sau96I	GGNCC	7 cut(s)	535, 911, 958, 1058, 1208, 1270, 1344
ScrFI	CCNGG	2 cut(s)	104, 1019
SduI	GDGCHC	3 cut(s)	382, 744, 1043
SfaNI	GCATC	2 cut(s)	844, 947
SfcI	CTRYAG	1 cut(s)	133
SinI	GGWCC	6 cut(s)	535, 911, 958, 1208, 1270, 1344
SmiI	ATTTAAAT	1 cut(s)	523
SpeI	ACTAGT	1 cut(s)	589
Sse9I	AATT	6 cut(s)	13, 417, 432, 688, 1062, 1258
SspMI	CTAG	2 cut(s)	77, 590
SstI	GAGCTC	2 cut(s)	744, 1043
StyD4I	CCNGG	2 cut(s)	102, 1017
StyI	CCWWGG	2 cut(s)	631, 995
SwaI	ATTTAAAT	1 cut(s)	523
TaaI	ACNGT	4 cut(s)	603, 1135, 1331, 1403
TaiI	ACGT	1 cut(s)	1251
TaqI	TCGA	3 cut(s)	744, 1032, 1178
TaqII	GACCGA	1 cut(s)	423
TasI	AATT	6 cut(s)	13, 417, 432, 688, 1062, 1258
TauI	GCSGC	2 cut(s)	129, 256
TfiI	GAWTC	2 cut(s)	847, 1099
Tru1I	TTAA	7 cut(s)	435, 522, 726, 1052, 1275, 1394, 1410
Tru9I	TTAA	7 cut(s)	435, 522, 726, 1052, 1275, 1394, 1410
TscAI	CASTG	2 cut(s)	844, 1140
TseFI	GTSAC	1 cut(s)	559
TseI	GCWGC	2 cut(s)	129, 1156
Tsp45I	GTSAC	1 cut(s)	559
TspDTI	ATGAA	1 cut(s)	798
TspGWI	ACGGA	3 cut(s)	257, 261, 1413
TspRI	CASTG	2 cut(s)	844, 1140
VpaK11BI	GGWCC	6 cut(s)	535, 911, 958, 1208, 1270, 1344
XmiI	GTMKAC	1 cut(s)	645
XspI	CTAG	2 cut(s)	77, 590

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.