Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0004065

Physical Location & Seq

Genomic Coordinates Forward (+)

6933938 .. 6938953

Gene Structure 5016 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG068100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1482 bp

ATGGGTACCAACCATTCTTTCTTTGCTTCAGTTTTGCTTTCACTACTTCTGCTACATTTGTGTTTGCAACATGATGTAGTTGAAGGTGCTGAAAGAGAAGCCTTGGAAATAATCATTGGTGGTGGCGGCAGCTACGGCGCTCCTGCTCCCTCCCCCGAATACGAAGAATGCCCTCCCCCTCCGCCTCCTCCTTGCCCGCCGCCGCCATCCCCGCCACCGCCACCTCCATCACCACCACCGCCATCACCTCCACCACCACCATCACCGCCACCGCCGTCACCACCACCACCATCACCGCCACCGCCGTCACCACCACCACCATCACCGCCACCGCCTTCACCACCACCCGCTCCGGTACTCACCAGACTTGGAATTGCCCTCCGAGTAATTATGAAGTTCAAAAAGCTAATCGGGGATGACCCACAAAACATCACAAGCACATGGGTCGGCAAGAATCCTTGCAAATTCAGGGGCTTTACCTGTGCAGTGGTCCCTGACTATAAACAAAATGCAGTCGCCGGAGTTGACTTCAATGGCAAAAGGCTAGCTGGTAAAATGTGGGGTGGCAAACGGAAAGAGCTACCCCTTGGCGGTTTCATGGACCAATTACCAGACTTGGTGTTTTTCCATGCCAACTCCAACAATTTCACAGGCTCAGTCCCGAAAGACACATCCAAACTTAGATACTTCTACGAGCTTGACCTCAGCAACAACAAACTTAGTGGGGGTTTCCCATATGACGTTCTAAGTGCCACAAAGTTGACATTCTTAGATCTCCGGTTCAACTCTTTCTGTGGGTCAGTTCCACCCCGAGTGTTCAAACTGGACGTTGATGTACTCTTCCTCAACAACAACAATTTCACTGAGCAGATTCCTGATGCTCTTGGCGCCTCACCAGCACATTATCTCACTTTTGCCAACAACAATTTCACGGGTCCAATCCCAAATAGCATTGGCAAAGCATCAAAAACGCTTTATGAGGTCCTCTTCCTCAACAACCAACTCTCAGGGTGTTTGCCATGGGAAATCGGCAAACTTAACCAGGCAACCTTGTTCGATGTGAGCACCAACTACTTAACAGGCCCAATTCCTCATTCCTTTGCTTGCTTGGCCAAGATGGAGATTCTGGTCTTGGACAACAACCAGTTCTATGGAACAGTGCCTGAGTTGGTATGCAAGCTGCCCGTCTTGACGAACTTGTCGTTAGCAAACAACTATTTCACCCAAGTCGGACCGGAGTGCAGAAAACTGATCAAGAAAGGGTTTCTCAACGTCAAGAACAATTGTATCTTGGACCTTAAAGATCAAAAATCAAAGAGTGATTGTGCTTGGTTCTTCTCTAAGGCCAGACACTGTCCCAACGAGCGGTCCATGCTTTACATTCCTTGTCAAACGCACTATTCAAGTGAGAAGAAGCCTGAACATCGAGGACAAGCTTCTGCCCCATTAAGTTATGGTACTCTTAAACCGCATAATCCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2

Protein Analysis

493

Amino Acids

53.73

Weight (kDa)

8.63

Isoelectric Point (pI)

56.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004065)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49750 AT3G19320
fragaria_vesca	FvH4_2g05530
malus_domestica	MD00G1014300.v1.1 MD05G1086700.v1.1
prunus_persica	Prupe.8G131400_v2.0.a1 Prupe.8G131500_v2.0.a1
pyrus_communis	pycom05g08610 pycom10g08130
rosa_chinensis	RchiOBHm_Chr4g0387761 RchiOBHm_Chr6g0255781 RchiOBHm_Chr6g0255841
rosa_laevigata	RLG00000014812 RLG00000014813
rosa_multiflora	Rmu_sc0001163.1_g000027 Rmu_sc0001163.1_g000029 Rmu_sc0004935.1_g000023
rosa_roxburghii	Rroxscaffold_7G00209620 Rroxscaffold_7G00209650
rosa_rugosa	Rorug05G0561500 Rorug05G0561700
rosa_samantha	Rh1AG424200 Rh4BG013200 Rh6AG079500 Rh6AG079800 Rh6BG072600 Rh6BG072700 Rh6CG070700 Rh6CG070800 Rh6DG068000 Rh6DG068100
rosa_wichuraiana	Rw6G006850 Rw6G006880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1198
Acc65I	GGTACC	1 cut(s)	5
AccB1I	GGYRCC	2 cut(s)	5, 887
AccBSI	CCGCTC	2 cut(s)	350, 1366
AcoI	YGGCCR	1 cut(s)	1110
AcsI	RAATTY	1 cut(s)	464
AcuI	CTGAAG	1 cut(s)	12
AcyI	GRCGYC	1 cut(s)	888
AfaI	GTAC	4 cut(s)	7, 357, 837, 1459
AfiI	CCNNNNNNNGG	2 cut(s)	590, 1365
AgsI	TTSAA	6 cut(s)	83, 400, 532, 784, 820, 1404
AjnI	CCWGG	1 cut(s)	1041
AjuI	GAANNNNNNNTTGG	7 cut(s)	34, 99, 131, 911, 943, 1078, 1110
AluBI	AGCT	7 cut(s)	132, 406, 548, 580, 697, 1180, 1436
AluI	AGCT	7 cut(s)	132, 406, 548, 580, 697, 1180, 1436
Alw21I	GWGCWC	1 cut(s)	1067
AlwNI	CAGNNNCTG	2 cut(s)	1163, 1353
Ama87I	CYCGRG	1 cut(s)	810
AoxI	GGCC	3 cut(s)	1081, 1110, 1344
ApeKI	GCWGC	2 cut(s)	129, 1180
ApoI	RAATTY	1 cut(s)	464
Asp718I	GGTACC	1 cut(s)	5
AspLEI	GCGC	2 cut(s)	140, 890
AspS9I	GGNCC	8 cut(s)	490, 601, 935, 982, 1082, 1232, 1294, 1368
AsuNHI	GCTAGC	1 cut(s)	544
AvaI	CYCGRG	1 cut(s)	810
AvaII	GGWCC	7 cut(s)	490, 601, 935, 982, 1232, 1294, 1368
BaeI	ACNNNNGTAYC	2 cut(s)	1270, 1303
BalI	TGGCCA	1 cut(s)	1112
BanI	GGYRCC	2 cut(s)	5, 887
Bbv12I	GWGCWC	1 cut(s)	1067
BbvCI	CCTCAGC	1 cut(s)	704
BbvI	GCAGC	2 cut(s)	141, 1167
BccI	CCATC	7 cut(s)	214, 235, 250, 268, 298, 328, 1111
BceAI	ACGGC	3 cut(s)	151, 259, 289
BcgI	CGANNNNNNTGC	2 cut(s)	427, 461
BciT130I	CCWGG	1 cut(s)	1043
BclI	TGATCA	1 cut(s)	1251
BfaI	CTAG	1 cut(s)	545
BfoI	RGCGCY	2 cut(s)	141, 891
BglII	AGATCT	1 cut(s)	772
BisI	GCNGC	5 cut(s)	127, 130, 200, 203, 1181
BlsI	GCNGC	5 cut(s)	128, 131, 201, 204, 1182
Bme1390I	CCNGG	1 cut(s)	1043
Bme18I	GGWCC	7 cut(s)	490, 601, 935, 982, 1232, 1294, 1368
BmeT110I	CYCGRG	1 cut(s)	810
BmgT120I	GGNCC	8 cut(s)	490, 601, 935, 982, 1082, 1232, 1294, 1368
BmiI	GGNNCC	4 cut(s)	7, 492, 889, 936
BmrFI	CCNGG	1 cut(s)	1043
BmsI	GCATC	2 cut(s)	868, 971
BmtI	GCTAGC	1 cut(s)	548
Bpu10I	CCTNAGC	1 cut(s)	704
BsaHI	GRCGYC	1 cut(s)	888
BsaJI	CCNNGG	3 cut(s)	102, 586, 1019
BsaWI	WCCGGW	3 cut(s)	352, 777, 1234
Bsc4I	CCNNNNNNNGG	2 cut(s)	590, 1365
Bse1I	ACTGG	2 cut(s)	828, 1144
BseBI	CCWGG	1 cut(s)	1043
BseDI	CCNNGG	3 cut(s)	102, 586, 1019
BseGI	GGATG	3 cut(s)	206, 421, 671
BseLI	CCNNNNNNNGG	2 cut(s)	590, 1365
BseMII	CTCAG	5 cut(s)	669, 718, 855, 1020, 1155
BseNI	ACTGG	2 cut(s)	828, 1144
BseRI	GAGGAG	1 cut(s)	177
BseXI	GCAGC	2 cut(s)	141, 1167
BsgI	GTGCAG	2 cut(s)	504, 1261
BshFI	GGCC	3 cut(s)	1083, 1112, 1346
BshNI	GGYRCC	2 cut(s)	5, 887
BsiHKAI	GWGCWC	1 cut(s)	1067
BsiHKCI	CYCGRG	1 cut(s)	810
BsiSI	CCGG	4 cut(s)	353, 519, 778, 1235
BslFI	GGGAC	3 cut(s)	476, 644, 1341
BslI	CCNNNNNNNGG	2 cut(s)	590, 1365
BsmFI	GGGAC	3 cut(s)	476, 644, 1341
BsmI	GAATGC	1 cut(s)	173
BsnI	GGCC	3 cut(s)	1083, 1112, 1346
BsoBI	CYCGRG	1 cut(s)	810
Bsp1286I	GDGCHC	1 cut(s)	1067
Bsp143I	GATC	3 cut(s)	772, 1251, 1303
Bsp19I	CCATGG	1 cut(s)	1019
BspANI	GGCC	3 cut(s)	1083, 1112, 1346
BspCNI	CTCAG	5 cut(s)	668, 717, 856, 1019, 1156
BspLI	GGNNCC	4 cut(s)	7, 492, 889, 936
BspOI	GCTAGC	1 cut(s)	548
BspT107I	GGYRCC	2 cut(s)	5, 887
BsrBI	CCGCTC	2 cut(s)	350, 1366
BsrI	ACTGG	2 cut(s)	828, 1144
BssECI	CCNNGG	3 cut(s)	102, 586, 1019
BssMI	GATC	3 cut(s)	772, 1251, 1303
BssNI	GRCGYC	1 cut(s)	888
BssT1I	CCWWGG	3 cut(s)	102, 586, 1019
Bst2UI	CCWGG	1 cut(s)	1043
Bst4CI	ACNGT	2 cut(s)	1159, 1355
Bst6I	CTCTTC	2 cut(s)	845, 992
BstACI	GRCGYC	1 cut(s)	888
BstC8I	GCNNGC	4 cut(s)	197, 546, 1105, 1178
BstDSI	CCRYGG	1 cut(s)	1019
BstF5I	GGATG	3 cut(s)	206, 421, 671
BstH2I	RGCGCY	2 cut(s)	141, 891
BstHHI	GCGC	2 cut(s)	140, 890
BstKTI	GATC	3 cut(s)	775, 1254, 1306
BstMBI	GATC	3 cut(s)	772, 1251, 1303
BstMWI	GCNNNNNNNGC	6 cut(s)	135, 211, 887, 896, 1109, 1372
BstNI	CCWGG	1 cut(s)	1043
BstSCI	CCNGG	1 cut(s)	1041
BstV1I	GCAGC	2 cut(s)	141, 1167
BstX2I	RGATCY	1 cut(s)	772
BstXI	CCANNNNNNTGG	1 cut(s)	1151
BstYI	RGATCY	1 cut(s)	772
BsuRI	GGCC	3 cut(s)	1083, 1112, 1346
BtgI	CCRYGG	1 cut(s)	1019
BtsCI	GGATG	3 cut(s)	206, 421, 671
BtsI	GCAGTG	1 cut(s)	492
BtsIMutI	CAGTG	4 cut(s)	492, 861, 1164, 1351
Cac8I	GCNNGC	4 cut(s)	197, 546, 1105, 1178
CaiI	CAGNNNCTG	2 cut(s)	1163, 1353
CfoI	GCGC	2 cut(s)	140, 890
Cfr13I	GGNCC	8 cut(s)	490, 601, 935, 982, 1082, 1232, 1294, 1368
CpoI	CGGWCCG	1 cut(s)	1232
Csp6I	GTAC	4 cut(s)	6, 356, 836, 1458
CspCI	CAANNNNNGTGG	2 cut(s)	703, 738
CspI	CGGWCCG	1 cut(s)	1232
CviAII	CATG	6 cut(s)	71, 441, 598, 629, 1020, 1372
CviQI	GTAC	4 cut(s)	6, 356, 836, 1458
DinI	GGCGCC	1 cut(s)	889
DpnI	GATC	3 cut(s)	774, 1253, 1305
DpnII	GATC	3 cut(s)	772, 1251, 1303
DrdI	GACNNNNNNGTC	1 cut(s)	1198
DseDI	GACNNNNNNGTC	1 cut(s)	1198
EaeI	YGGCCR	1 cut(s)	1110
Eam1104I	CTCTTC	2 cut(s)	845, 992
EarI	CTCTTC	2 cut(s)	845, 992
EciI	GGCGGA	1 cut(s)	171
Eco130I	CCWWGG	3 cut(s)	102, 586, 1019
Eco47I	GGWCC	7 cut(s)	490, 601, 935, 982, 1232, 1294, 1368
Eco57I	CTGAAG	1 cut(s)	12
Eco88I	CYCGRG	1 cut(s)	810
EcoO109I	RGGNCCY	1 cut(s)	982
EcoRII	CCWGG	1 cut(s)	1041
EcoT14I	CCWWGG	3 cut(s)	102, 586, 1019
EgeI	GGCGCC	1 cut(s)	889
EheI	GGCGCC	1 cut(s)	889
ErhI	CCWWGG	3 cut(s)	102, 586, 1019
FaeI	CATG	6 cut(s)	74, 444, 601, 632, 1023, 1375
FaqI	GGGAC	3 cut(s)	476, 644, 1341
FatI	CATG	6 cut(s)	70, 440, 597, 628, 1019, 1371
FauI	CCCGC	3 cut(s)	204, 219, 355
FauNDI	CATATG	1 cut(s)	736
FbaI	TGATCA	1 cut(s)	1251
Fnu4HI	GCNGC	5 cut(s)	127, 130, 200, 203, 1181
FokI	GGATG	3 cut(s)	193, 428, 658
Fsp4HI	GCNGC	5 cut(s)	127, 130, 200, 203, 1181
FspBI	CTAG	1 cut(s)	545
GlaI	GCGC	2 cut(s)	139, 889
GluI	GCNGC	5 cut(s)	127, 130, 200, 203, 1181
HaeII	RGCGCY	2 cut(s)	141, 891
HaeIII	GGCC	3 cut(s)	1083, 1112, 1346
HapII	CCGG	4 cut(s)	353, 519, 778, 1235
HhaI	GCGC	2 cut(s)	140, 890
Hin1I	GRCGYC	1 cut(s)	888
Hin1II	CATG	6 cut(s)	74, 444, 601, 632, 1023, 1375
Hin6I	GCGC	2 cut(s)	138, 888
HinP1I	GCGC	2 cut(s)	138, 888
HincII	GTYRAC	2 cut(s)	526, 762
HindII	GTYRAC	2 cut(s)	526, 762
HindIII	AAGCTT	1 cut(s)	1434
HinfI	GANTC	3 cut(s)	454, 871, 1123
HpaII	CCGG	4 cut(s)	353, 519, 778, 1235
Hpy166II	GTNNAC	2 cut(s)	526, 762
Hpy188I	TCNGA	2 cut(s)	383, 1232
Hpy188III	TCNNGA	5 cut(s)	661, 875, 1189, 1255, 1276
Hpy8I	GTNNAC	2 cut(s)	526, 762
HpyAV	CCTTC	2 cut(s)	77, 345
HpyCH4III	ACNGT	2 cut(s)	1159, 1355
HpyCH4IV	ACGT	3 cut(s)	741, 828, 1272
HpyCH4V	TGCA	6 cut(s)	67, 462, 485, 512, 1176, 1242
HpyF10VI	GCNNNNNNNGC	6 cut(s)	135, 211, 887, 896, 1109, 1372
HpySE526I	ACGT	3 cut(s)	741, 828, 1272
Hsp92I	GRCGYC	1 cut(s)	888
Hsp92II	CATG	6 cut(s)	74, 444, 601, 632, 1023, 1375
HspAI	GCGC	2 cut(s)	138, 888
KasI	GGCGCC	1 cut(s)	887
KpnI	GGTACC	1 cut(s)	9
Ksp22I	TGATCA	1 cut(s)	1251
Kzo9I	GATC	3 cut(s)	772, 1251, 1303
LmnI	GCTCC	3 cut(s)	145, 151, 355
Lsp1109I	GCAGC	2 cut(s)	141, 1167
LweI	GCATC	2 cut(s)	868, 971
MaeI	CTAG	1 cut(s)	545
MaeII	ACGT	3 cut(s)	741, 828, 1272
MaeIII	GTNAC	2 cut(s)	276, 306
MalI	GATC	3 cut(s)	774, 1253, 1305
MbiI	CCGCTC	2 cut(s)	350, 1366
MboI	GATC	3 cut(s)	772, 1251, 1303
MboII	GAAGA	5 cut(s)	176, 832, 979, 1327, 1423
MfeI	CAATTG	1 cut(s)	1282
MflI	RGATCY	1 cut(s)	772
MhlI	GDGCHC	1 cut(s)	1067
MlsI	TGGCCA	1 cut(s)	1112
MluCI	AATT	9 cut(s)	372, 387, 464, 605, 643, 856, 925, 1086, 1282
MluNI	TGGCCA	1 cut(s)	1112
Mly113I	GGCGCC	1 cut(s)	888
MmeI	TCCRAC	2 cut(s)	663, 1210
Mox20I	TGGCCA	1 cut(s)	1112
MscI	TGGCCA	1 cut(s)	1112
MseI	TTAA	5 cut(s)	1038, 1076, 1299, 1448, 1464
Msp20I	TGGCCA	1 cut(s)	1112
MspI	CCGG	4 cut(s)	353, 519, 778, 1235
MspR9I	CCNGG	1 cut(s)	1043
MunI	CAATTG	1 cut(s)	1282
Mva1269I	GAATGC	1 cut(s)	173
MvaI	CCWGG	1 cut(s)	1043
MwoI	GCNNNNNNNGC	6 cut(s)	135, 211, 887, 896, 1109, 1372
NarI	GGCGCC	1 cut(s)	888
NcoI	CCATGG	1 cut(s)	1019
NdeI	CATATG	1 cut(s)	736
NdeII	GATC	3 cut(s)	772, 1251, 1303
NheI	GCTAGC	1 cut(s)	544
NlaIII	CATG	6 cut(s)	74, 444, 601, 632, 1023, 1375
NlaIV	GGNNCC	4 cut(s)	7, 492, 889, 936
NmuCI	GTSAC	2 cut(s)	276, 306
PcsI	WCGNNNNNNNCGW	1 cut(s)	1199
PctI	GAATGC	1 cut(s)	173
PfeI	GAWTC	3 cut(s)	454, 871, 1123
PflFI	GACNNNGTC	1 cut(s)	1353
PkrI	GCNGC	5 cut(s)	128, 131, 201, 204, 1182
PluTI	GGCGCC	1 cut(s)	891
PpuMI	RGGWCCY	1 cut(s)	982
Psp5II	RGGWCCY	1 cut(s)	982
Psp6I	CCWGG	1 cut(s)	1041
PspGI	CCWGG	1 cut(s)	1041
PspN4I	GGNNCC	4 cut(s)	7, 492, 889, 936
PspPI	GGNCC	8 cut(s)	490, 601, 935, 982, 1082, 1232, 1294, 1368
PspPPI	RGGWCCY	1 cut(s)	982
PstNI	CAGNNNCTG	2 cut(s)	1163, 1353
PsuI	RGATCY	1 cut(s)	772
PsyI	GACNNNGTC	1 cut(s)	1353
RsaI	GTAC	4 cut(s)	7, 357, 837, 1459
RsaNI	GTAC	4 cut(s)	6, 356, 836, 1458
Rsr2I	CGGWCCG	1 cut(s)	1232
RsrII	CGGWCCG	1 cut(s)	1232
SaqAI	TTAA	5 cut(s)	1038, 1076, 1299, 1448, 1464
SatI	GCNGC	5 cut(s)	127, 130, 200, 203, 1181
Sau3AI	GATC	3 cut(s)	772, 1251, 1303
Sau96I	GGNCC	8 cut(s)	490, 601, 935, 982, 1082, 1232, 1294, 1368
ScrFI	CCNGG	1 cut(s)	1043
SduI	GDGCHC	1 cut(s)	1067
SfaNI	GCATC	2 cut(s)	868, 971
SfoI	GGCGCC	1 cut(s)	889
SinI	GGWCC	7 cut(s)	490, 601, 935, 982, 1232, 1294, 1368
Sse9I	AATT	9 cut(s)	372, 387, 464, 605, 643, 856, 925, 1086, 1282
SspDI	GGCGCC	1 cut(s)	887
SspMI	CTAG	1 cut(s)	545
StyD4I	CCNGG	1 cut(s)	1041
StyI	CCWWGG	3 cut(s)	102, 586, 1019
TaaI	ACNGT	2 cut(s)	1159, 1355
TaiI	ACGT	3 cut(s)	744, 831, 1275
TaqI	TCGA	2 cut(s)	1056, 1426
TasI	AATT	9 cut(s)	372, 387, 464, 605, 643, 856, 925, 1086, 1282
TatI	WGTACW	1 cut(s)	835
TauI	GCSGC	3 cut(s)	129, 202, 205
TfiI	GAWTC	3 cut(s)	454, 871, 1123
Tru1I	TTAA	5 cut(s)	1038, 1076, 1299, 1448, 1464
Tru9I	TTAA	5 cut(s)	1038, 1076, 1299, 1448, 1464
TscAI	CASTG	4 cut(s)	492, 868, 1164, 1358
TseFI	GTSAC	2 cut(s)	276, 306
TseI	GCWGC	2 cut(s)	129, 1180
Tsp45I	GTSAC	2 cut(s)	276, 306
TspDTI	ATGAA	2 cut(s)	407, 586
TspGWI	ACGGA	2 cut(s)	586, 1467
TspRI	CASTG	4 cut(s)	492, 868, 1164, 1358
Tth111I	GACNNNGTC	1 cut(s)	1353
VpaK11BI	GGWCC	7 cut(s)	490, 601, 935, 982, 1232, 1294, 1368
XapI	RAATTY	1 cut(s)	464
XspI	CTAG	1 cut(s)	545

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.