Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0004065

Physical Location & Seq

Genomic Coordinates Forward (+)

11619549 .. 11621715

Gene Structure 2167 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG079800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1473 bp

ATGGGTACCAACAATTCTTTCTTTGCTTCAGTTTTGCTTTCACTACTTCTGCTACATTTGTGTTTGCAACATGATGTAGTTGAAGGTGCTGAAAGAGAAGCCTTGGAAATAATCATTGGTGGTGGCGGCAGCTACAGCCCTCCTCCTGCTCCCTCCCCCGAATACGAAGAATGCCCTCCCCCTCCGCCTCCTCCTTGCCCGCCGCCACCATTCCCGCCACCGCCACCTCCATCACCACCGCCGCCGTCACCTCCTCCACCACCATCACCGCCACCTCCACCGCCACCTTCACCACGACTGCCACCATCACCTCCACCACGACCACGACCGCGACCACCACCCCCTCCGAACACCAGACTTGGAATTGCCCTCCGAGTAATTCGTAAGTTCCAAAAGCTAATCGGGGAGGACCCAGAAAACATCACAAGCACATGGGTCGGCGACAATCCTTGCAAATTCAGGGGCTTTACCTGTGCAAAGGTCCCTGACTATAAGCAAAATGCAGTCGCCGGAGTTGACTTCAATGGCAAAAGGCTAGCTGGTAAACAGTTCGGCGGGAAAAGGAGAGAGCTACCCCTTGGCGGTTTCTTGGACCAGTTACCAGACTTGGTGTTTTTCCATGCCAACTCCAACAATTTCACAGGCTCAGTCCCTAAAGACACATCCAAACTTAGATACTTCTACGAGCTTGACCTCAGCAACAACAAGCTTGATGGGGGTTTCCCATATGAAGTTCAAAGTGCCAAAAATTTGACATTCTTAGATCTCCGGTTCAACTATTTCAGTGGGTCAGTTCCACCCCAAGTGTTCTTCCTGGAAGTTGATGTACTCTTCCTCAACAACAACAATTTCATTGAGCAGATTCCTGATGCTCTTGGCTCCTCACCAGCACATTATCTCACTTTTGCCAACAACAAGTTCTGGGGTCCAATCCCAAATAGCATTGGCAAAGCATCAAAAACGCTTTATGAGGTCCTCTTCCTCAACAACCAACTCTCAGGGTGTTTGCCATGGGAAATCGGCAAACTTAACCAGGCAACCTTGTTCGATGTGAGCACCAACTACTTAACAGGCCCAATTCCTCATTCCTTTGCTTGCTTGGCCAAGATGGAGATTCTGGTCTTGGCTAACAACCAGTTCTATGGAACAGTGCCTGAGTTGGTATGCAAGCTGCCCGGCTTGAGGAACTTGTCGTTAGCAAACAACTACTTTACCCAAGTCGGACCGGAGTGCAGAAAACTGATCAAGAAAGGGTTTCTCGACGTCAAGAACAATTGTATCTTGGACCTTAAAGATCAAAGATCAAAGAGTGATTGTGGTTGGTTCTTCTCTAAGGCCAGACACTGTCCCAACGAGCGGTCCATGCTTTACATTCCTTGTCAAACGCACTATTCAAATGAGAAGAAGCCTGAACATCGAGGACAAGCTTCTGCCCCATTAAGTTATGGCACTCTTAAACCGCATAATCCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2

Protein Analysis

490

Amino Acids

54.13

Weight (kDa)

8.75

Isoelectric Point (pI)

57.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004065)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49750 AT3G19320
fragaria_vesca	FvH4_2g05530
malus_domestica	MD00G1014300.v1.1 MD05G1086700.v1.1
prunus_persica	Prupe.8G131400_v2.0.a1 Prupe.8G131500_v2.0.a1
pyrus_communis	pycom05g08610 pycom10g08130
rosa_chinensis	RchiOBHm_Chr4g0387761 RchiOBHm_Chr6g0255781 RchiOBHm_Chr6g0255841
rosa_laevigata	RLG00000014812 RLG00000014813
rosa_multiflora	Rmu_sc0001163.1_g000027 Rmu_sc0001163.1_g000029 Rmu_sc0004935.1_g000023
rosa_roxburghii	Rroxscaffold_7G00209620 Rroxscaffold_7G00209650
rosa_rugosa	Rorug05G0561500 Rorug05G0561700
rosa_samantha	Rh1AG424200 Rh4BG013200 Rh6AG079500 Rh6AG079800 Rh6BG072600 Rh6BG072700 Rh6CG070700 Rh6CG070800 Rh6DG068000 Rh6DG068100
rosa_wichuraiana	Rw6G006850 Rw6G006880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1266
Acc65I	GGTACC	1 cut(s)	5
AccB1I	GGYRCC	1 cut(s)	5
AccBSI	CCGCTC	1 cut(s)	1357
AccII	CGCG	1 cut(s)	331
AcoI	YGGCCR	1 cut(s)	1101
AcsI	RAATTY	2 cut(s)	455, 748
AcuI	CTGAAG	1 cut(s)	12
AcyI	GRCGYC	1 cut(s)	1263
AfaI	GTAC	2 cut(s)	7, 828
AfiI	CCNNNNNNNGG	3 cut(s)	581, 1182, 1356
AgsI	TTSAA	5 cut(s)	83, 523, 737, 775, 1395
AjnI	CCWGG	2 cut(s)	813, 1032
AjuI	GAANNNNNNNTTGG	7 cut(s)	34, 99, 131, 902, 934, 1069, 1101
AluBI	AGCT	8 cut(s)	132, 397, 539, 571, 688, 709, 1171, 1427
AluI	AGCT	8 cut(s)	132, 397, 539, 571, 688, 709, 1171, 1427
Alw21I	GWGCWC	1 cut(s)	1058
AlwNI	CAGNNNCTG	2 cut(s)	1154, 1344
AoxI	GGCC	3 cut(s)	1072, 1101, 1335
ApeKI	GCWGC	2 cut(s)	129, 1171
ApoI	RAATTY	2 cut(s)	455, 748
Asp718I	GGTACC	1 cut(s)	5
AspS9I	GGNCC	9 cut(s)	409, 481, 592, 926, 973, 1073, 1223, 1285, 1359
AsuC2I	CCSGG	1 cut(s)	1176
AsuHPI	GGTGA	6 cut(s)	225, 240, 258, 282, 300, 876
AsuNHI	GCTAGC	1 cut(s)	535
AvaII	GGWCC	8 cut(s)	409, 481, 592, 926, 973, 1223, 1285, 1359
BaeI	ACNNNNGTAYC	2 cut(s)	1261, 1294
BalI	TGGCCA	1 cut(s)	1103
BanI	GGYRCC	1 cut(s)	5
BarI	GAAGNNNNNNTAC	2 cut(s)	810, 842
Bbv12I	GWGCWC	1 cut(s)	1058
BbvCI	CCTCAGC	1 cut(s)	695
BbvI	GCAGC	2 cut(s)	141, 1158
BccI	CCATC	5 cut(s)	238, 271, 313, 707, 1102
BceAI	ACGGC	1 cut(s)	229
BcgI	CGANNNNNNTGC	2 cut(s)	418, 452
BciT130I	CCWGG	2 cut(s)	815, 1034
BclI	TGATCA	1 cut(s)	1242
BcnI	CCSGG	1 cut(s)	1176
BfaI	CTAG	1 cut(s)	536
BfmI	CTRYAG	1 cut(s)	133
BglII	AGATCT	1 cut(s)	763
BisI	GCNGC	5 cut(s)	127, 130, 203, 242, 1172
BlsI	GCNGC	5 cut(s)	128, 131, 204, 243, 1173
Bme1390I	CCNGG	3 cut(s)	815, 1034, 1176
Bme18I	GGWCC	8 cut(s)	409, 481, 592, 926, 973, 1223, 1285, 1359
BmgT120I	GGNCC	9 cut(s)	409, 481, 592, 926, 973, 1073, 1223, 1285, 1359
BmiI	GGNNCC	5 cut(s)	7, 411, 483, 880, 927
BmrFI	CCNGG	3 cut(s)	815, 1034, 1176
BmsI	GCATC	2 cut(s)	859, 962
BmtI	GCTAGC	1 cut(s)	539
Bpu10I	CCTNAGC	1 cut(s)	695
BpuEI	CTTGAG	1 cut(s)	1201
BpuMI	CCSGG	1 cut(s)	1176
BsaHI	GRCGYC	1 cut(s)	1263
BsaJI	CCNNGG	3 cut(s)	102, 577, 1010
BsaWI	WCCGGW	2 cut(s)	768, 1225
Bsc4I	CCNNNNNNNGG	3 cut(s)	581, 1182, 1356
Bse1I	ACTGG	2 cut(s)	595, 1135
BseBI	CCWGG	2 cut(s)	815, 1034
BseDI	CCNNGG	3 cut(s)	102, 577, 1010
BseGI	GGATG	1 cut(s)	662
BseLI	CCNNNNNNNGG	3 cut(s)	581, 1182, 1356
BseMII	CTCAG	4 cut(s)	660, 709, 1011, 1146
BseNI	ACTGG	2 cut(s)	595, 1135
BseRI	GAGGAG	4 cut(s)	132, 180, 243, 871
BseXI	GCAGC	2 cut(s)	141, 1158
BsgI	GTGCAG	1 cut(s)	1252
Bsh1236I	CGCG	1 cut(s)	331
Bsh1285I	CGRYCG	1 cut(s)	329
BshFI	GGCC	3 cut(s)	1074, 1103, 1337
BshNI	GGYRCC	1 cut(s)	5
BsiEI	CGRYCG	1 cut(s)	329
BsiHKAI	GWGCWC	1 cut(s)	1058
BsiSI	CCGG	4 cut(s)	510, 769, 1176, 1226
BslFI	GGGAC	3 cut(s)	467, 635, 1332
BslI	CCNNNNNNNGG	3 cut(s)	581, 1182, 1356
BsmFI	GGGAC	3 cut(s)	467, 635, 1332
BsmI	GAATGC	1 cut(s)	176
BsnI	GGCC	3 cut(s)	1074, 1103, 1337
Bsp1286I	GDGCHC	1 cut(s)	1058
Bsp143I	GATC	4 cut(s)	763, 1242, 1294, 1301
Bsp19I	CCATGG	1 cut(s)	1010
BspANI	GGCC	3 cut(s)	1074, 1103, 1337
BspCNI	CTCAG	4 cut(s)	659, 708, 1010, 1147
BspFNI	CGCG	1 cut(s)	331
BspLI	GGNNCC	5 cut(s)	7, 411, 483, 880, 927
BspOI	GCTAGC	1 cut(s)	539
BspT107I	GGYRCC	1 cut(s)	5
BsrBI	CCGCTC	1 cut(s)	1357
BsrI	ACTGG	2 cut(s)	595, 1135
BssECI	CCNNGG	3 cut(s)	102, 577, 1010
BssMI	GATC	4 cut(s)	763, 1242, 1294, 1301
BssNI	GRCGYC	1 cut(s)	1263
BssT1I	CCWWGG	3 cut(s)	102, 577, 1010
Bst2UI	CCWGG	2 cut(s)	815, 1034
Bst4CI	ACNGT	3 cut(s)	549, 1150, 1346
Bst6I	CTCTTC	2 cut(s)	836, 983
BstACI	GRCGYC	1 cut(s)	1263
BstC8I	GCNNGC	4 cut(s)	200, 537, 1096, 1169
BstDEI	CTNAG	7 cut(s)	646, 671, 695, 760, 997, 1155, 1332
BstDSI	CCRYGG	1 cut(s)	1010
BstF5I	GGATG	1 cut(s)	662
BstFNI	CGCG	1 cut(s)	331
BstKTI	GATC	4 cut(s)	766, 1245, 1297, 1304
BstMBI	GATC	4 cut(s)	763, 1242, 1294, 1301
BstMCI	CGRYCG	1 cut(s)	329
BstMWI	GCNNNNNNNGC	3 cut(s)	135, 1100, 1363
BstNI	CCWGG	2 cut(s)	815, 1034
BstSCI	CCNGG	3 cut(s)	813, 1032, 1174
BstSFI	CTRYAG	1 cut(s)	133
BstUI	CGCG	1 cut(s)	331
BstV1I	GCAGC	2 cut(s)	141, 1158
BstX2I	RGATCY	1 cut(s)	763
BstXI	CCANNNNNNTGG	1 cut(s)	1142
BstYI	RGATCY	1 cut(s)	763
BsuRI	GGCC	3 cut(s)	1074, 1103, 1337
BtgI	CCRYGG	1 cut(s)	1010
BtsCI	GGATG	1 cut(s)	662
BtsIMutI	CAGTG	3 cut(s)	790, 1155, 1342
Cac8I	GCNNGC	4 cut(s)	200, 537, 1096, 1169
CaiI	CAGNNNCTG	2 cut(s)	1154, 1344
Cfr13I	GGNCC	9 cut(s)	409, 481, 592, 926, 973, 1073, 1223, 1285, 1359
CpoI	CGGWCCG	1 cut(s)	1223
Csp6I	GTAC	2 cut(s)	6, 827
CspI	CGGWCCG	1 cut(s)	1223
CviAII	CATG	5 cut(s)	71, 432, 620, 1011, 1363
CviQI	GTAC	2 cut(s)	6, 827
DdeI	CTNAG	7 cut(s)	646, 671, 695, 760, 997, 1155, 1332
DpnI	GATC	4 cut(s)	765, 1244, 1296, 1303
DpnII	GATC	4 cut(s)	763, 1242, 1294, 1301
EaeI	YGGCCR	1 cut(s)	1101
Eam1104I	CTCTTC	2 cut(s)	836, 983
EarI	CTCTTC	2 cut(s)	836, 983
EciI	GGCGGA	1 cut(s)	174
Eco130I	CCWWGG	3 cut(s)	102, 577, 1010
Eco47I	GGWCC	8 cut(s)	409, 481, 592, 926, 973, 1223, 1285, 1359
Eco57I	CTGAAG	1 cut(s)	12
EcoO109I	RGGNCCY	3 cut(s)	409, 481, 973
EcoRII	CCWGG	2 cut(s)	813, 1032
EcoT14I	CCWWGG	3 cut(s)	102, 577, 1010
ErhI	CCWWGG	3 cut(s)	102, 577, 1010
FaeI	CATG	5 cut(s)	74, 435, 623, 1014, 1366
FaqI	GGGAC	3 cut(s)	467, 635, 1332
FatI	CATG	5 cut(s)	70, 431, 619, 1010, 1362
FauI	CCCGC	3 cut(s)	207, 222, 548
FauNDI	CATATG	1 cut(s)	727
FbaI	TGATCA	1 cut(s)	1242
Fnu4HI	GCNGC	5 cut(s)	127, 130, 203, 242, 1172
FokI	GGATG	1 cut(s)	649
Fsp4HI	GCNGC	5 cut(s)	127, 130, 203, 242, 1172
FspBI	CTAG	1 cut(s)	536
GluI	GCNGC	5 cut(s)	127, 130, 203, 242, 1172
HaeIII	GGCC	3 cut(s)	1074, 1103, 1337
HapII	CCGG	4 cut(s)	510, 769, 1176, 1226
Hin1I	GRCGYC	1 cut(s)	1263
Hin1II	CATG	5 cut(s)	74, 435, 623, 1014, 1366
HincII	GTYRAC	1 cut(s)	517
HindII	GTYRAC	1 cut(s)	517
HindIII	AAGCTT	2 cut(s)	707, 1425
HinfI	GANTC	2 cut(s)	862, 1114
HpaII	CCGG	4 cut(s)	510, 769, 1176, 1226
HphI	GGTGA	6 cut(s)	225, 240, 258, 282, 300, 876
Hpy166II	GTNNAC	2 cut(s)	517, 545
Hpy188I	TCNGA	3 cut(s)	348, 374, 1223
Hpy188III	TCNNGA	4 cut(s)	866, 1246, 1259, 1267
Hpy8I	GTNNAC	2 cut(s)	517, 545
Hpy99I	CGWCG	1 cut(s)	1265
HpyAV	CCTTC	2 cut(s)	77, 297
HpyCH4III	ACNGT	3 cut(s)	549, 1150, 1346
HpyCH4IV	ACGT	1 cut(s)	1263
HpyCH4V	TGCA	6 cut(s)	67, 453, 476, 503, 1167, 1233
HpyF10VI	GCNNNNNNNGC	3 cut(s)	135, 1100, 1363
HpyF3I	CTNAG	7 cut(s)	646, 671, 695, 760, 997, 1155, 1332
HpySE526I	ACGT	1 cut(s)	1263
Hsp92I	GRCGYC	1 cut(s)	1263
Hsp92II	CATG	5 cut(s)	74, 435, 623, 1014, 1366
KpnI	GGTACC	1 cut(s)	9
Ksp22I	TGATCA	1 cut(s)	1242
Kzo9I	GATC	4 cut(s)	763, 1242, 1294, 1301
LmnI	GCTCC	2 cut(s)	154, 884
Lsp1109I	GCAGC	2 cut(s)	141, 1158
LweI	GCATC	2 cut(s)	859, 962
MaeI	CTAG	1 cut(s)	536
MaeII	ACGT	1 cut(s)	1263
MaeIII	GTNAC	2 cut(s)	246, 597
MalI	GATC	4 cut(s)	765, 1244, 1296, 1303
MbiI	CCGCTC	1 cut(s)	1357
MboI	GATC	4 cut(s)	763, 1242, 1294, 1301
MboII	GAAGA	6 cut(s)	179, 802, 823, 970, 1318, 1414
MfeI	CAATTG	1 cut(s)	1273
MflI	RGATCY	1 cut(s)	763
MhlI	GDGCHC	1 cut(s)	1058
MlsI	TGGCCA	1 cut(s)	1103
MluCI	AATT	9 cut(s)	13, 363, 378, 455, 634, 748, 847, 1077, 1273
MluNI	TGGCCA	1 cut(s)	1103
MmeI	TCCRAC	2 cut(s)	654, 1201
Mox20I	TGGCCA	1 cut(s)	1103
MscI	TGGCCA	1 cut(s)	1103
MseI	TTAA	5 cut(s)	1029, 1067, 1290, 1439, 1455
Msp20I	TGGCCA	1 cut(s)	1103
MspI	CCGG	4 cut(s)	510, 769, 1176, 1226
MspR9I	CCNGG	3 cut(s)	815, 1034, 1176
MunI	CAATTG	1 cut(s)	1273
Mva1269I	GAATGC	1 cut(s)	176
MvaI	CCWGG	2 cut(s)	815, 1034
MvnI	CGCG	1 cut(s)	331
MwoI	GCNNNNNNNGC	3 cut(s)	135, 1100, 1363
NciI	CCSGG	1 cut(s)	1176
NcoI	CCATGG	1 cut(s)	1010
NdeI	CATATG	1 cut(s)	727
NdeII	GATC	4 cut(s)	763, 1242, 1294, 1301
NheI	GCTAGC	1 cut(s)	535
NlaIII	CATG	5 cut(s)	74, 435, 623, 1014, 1366
NlaIV	GGNNCC	5 cut(s)	7, 411, 483, 880, 927
NmuCI	GTSAC	1 cut(s)	246
PctI	GAATGC	1 cut(s)	176
PfeI	GAWTC	2 cut(s)	862, 1114
PflFI	GACNNNGTC	1 cut(s)	1344
PfoI	TCCNGGA	1 cut(s)	813
PkrI	GCNGC	5 cut(s)	128, 131, 204, 243, 1173
PpuMI	RGGWCCY	3 cut(s)	409, 481, 973
Psp5II	RGGWCCY	3 cut(s)	409, 481, 973
Psp6I	CCWGG	2 cut(s)	813, 1032
PspGI	CCWGG	2 cut(s)	813, 1032
PspN4I	GGNNCC	5 cut(s)	7, 411, 483, 880, 927
PspPI	GGNCC	9 cut(s)	409, 481, 592, 926, 973, 1073, 1223, 1285, 1359
PspPPI	RGGWCCY	3 cut(s)	409, 481, 973
PstNI	CAGNNNCTG	2 cut(s)	1154, 1344
PsuI	RGATCY	1 cut(s)	763
PsyI	GACNNNGTC	1 cut(s)	1344
RsaI	GTAC	2 cut(s)	7, 828
RsaNI	GTAC	2 cut(s)	6, 827
Rsr2I	CGGWCCG	1 cut(s)	1223
RsrII	CGGWCCG	1 cut(s)	1223
SaqAI	TTAA	5 cut(s)	1029, 1067, 1290, 1439, 1455
SatI	GCNGC	5 cut(s)	127, 130, 203, 242, 1172
Sau3AI	GATC	4 cut(s)	763, 1242, 1294, 1301
Sau96I	GGNCC	9 cut(s)	409, 481, 592, 926, 973, 1073, 1223, 1285, 1359
ScrFI	CCNGG	3 cut(s)	815, 1034, 1176
SduI	GDGCHC	1 cut(s)	1058
SfaNI	GCATC	2 cut(s)	859, 962
SfcI	CTRYAG	1 cut(s)	133
SinI	GGWCC	8 cut(s)	409, 481, 592, 926, 973, 1223, 1285, 1359
SmlI	CTYRAG	1 cut(s)	1180
SmoI	CTYRAG	1 cut(s)	1180
Sse9I	AATT	9 cut(s)	13, 363, 378, 455, 634, 748, 847, 1077, 1273
SspMI	CTAG	1 cut(s)	536
StyD4I	CCNGG	3 cut(s)	813, 1032, 1174
StyI	CCWWGG	3 cut(s)	102, 577, 1010
TaaI	ACNGT	3 cut(s)	549, 1150, 1346
TaiI	ACGT	1 cut(s)	1266
TaqI	TCGA	3 cut(s)	1047, 1260, 1417
TasI	AATT	9 cut(s)	13, 363, 378, 455, 634, 748, 847, 1077, 1273
TatI	WGTACW	1 cut(s)	826
TauI	GCSGC	3 cut(s)	129, 205, 244
TfiI	GAWTC	2 cut(s)	862, 1114
Tru1I	TTAA	5 cut(s)	1029, 1067, 1290, 1439, 1455
Tru9I	TTAA	5 cut(s)	1029, 1067, 1290, 1439, 1455
TscAI	CASTG	3 cut(s)	790, 1155, 1349
TseFI	GTSAC	1 cut(s)	246
TseI	GCWGC	2 cut(s)	129, 1171
Tsp45I	GTSAC	1 cut(s)	246
TspDTI	ATGAA	2 cut(s)	744, 841
TspGWI	ACGGA	1 cut(s)	1458
TspRI	CASTG	3 cut(s)	790, 1155, 1349
Tth111I	GACNNNGTC	1 cut(s)	1344
VpaK11BI	GGWCC	8 cut(s)	409, 481, 592, 926, 973, 1223, 1285, 1359
XapI	RAATTY	2 cut(s)	455, 748
XspI	CTAG	1 cut(s)	536
ZraI	GACGTC	1 cut(s)	1264

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.