RLG00000014812

At4g06744-like

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
Physical Location & Seq
Reverse (-)
57840719 .. 57843053
2335 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000014812

Sequence Viewer

Length: 1524 bp
ATGGGTACCAACAATTCTTTCTTTGCTTCAGTTTTGCTTTCACTACTTCTGCTACATTTGTGTTTGCAACATGATGTAGTTGAAGGTGCTGAAAGAGAAACCTTGGAAATAATCATTGGTGGTGGCGGCAGCTACAGCCCTCCTCCTGCTCCCTCCCCCGAATACGAAGACTGCCCTCCCCCTCCGCCTCCTCCTTGCCCGCCGCCACCACCCCCTCCAGTGCAACCTCCTTGCCCGCCGCCACCACCACCGCCGTCACCTCCTCCACCACCATCACCGCCACCTCCACCTCCACCATCACCGCCACCTCCACCTCCACCATCACCGCCACCTCCACCTCCACCTTCACCACGACTGCCACCATCACCTCCGCCACGACCACGACCGCGACCACCACCCGCTCCGAACACCAGACTTGCAAATGCCCTCCGAGTAATTCGTAAGTTCCGAAAGCTAATCATCCATGACCCATTCGGCATCACAAACACATGGAAGGGCAATAATCCTTGCAAATTCAAGGGCTTCACCTGTGCAATGTTCCCTGACGATAAACAAATGGCAGTCGCCGGAGTTGACTTCAATGGCAAACTGTTGGCCGGCAATGAAACAGCTAAGCAACCCCTTCCCCTTGACGGTTTCCTAGACCAGTTACAAGAGTTGGTGTTTTTCCATGCCAACTCCAACAATTTCACAGGCTCAGTCCCGAAAGGCACATCCAAACTTAAATACTTCTACGAGCTTGACCTCAGCAACAACAAGCTTGCTGGGGATTTCCCATATGACGTTCTAAGTGCCACAAACTTGACATTCTTAGATCTCCGGTTCAACTATTTCCGTGGGTCAGTTCCACCCCAAGTGTTCTTCCTCGACGTTGATGTACTCTTCCTCAACAACAACTATTTCACTGAGCAGATTCCTGATGCTCTTGGCTCCTCACCAGCACATTATCTCACTTTTGCCAACAACAAGTTCTCGGGTCCAATCCCAAATAGCATTGGCAGAGCATCAAAAACGCTTTATGAGGTCCTCTTCCTCAACAACCAACTCTCAGGGTGTTTGCCATGGGAAATCGGCAAACTTAACCAGGCAACCTTGTTCGATGTGAGCACCAACTACTTAACAGGCCCAATTCCTCATTCCTTTGCTTGCTTGGCCAAGATGGAGATTCTGGTCTTGGACAACAACCAATTCTATGGAACAGTGCCTGAGTTGGTATGCAAGCTGCCCGCCTTGACGAACTTGTCGTTAGCAAACAACTATTTCACCCAAGTCGGACCGGAGTGCAGAAAACTGATCAAGAAAGGGTTTCTCAACGTCAAGAACAATTGTATCTTGGACCTTAAAGATCAAAGATCAAAGAGTGATTGTGCTTGGTTCTTCTCTAAGGCCAGAAACTGTCCCAACGAGCGGTCCATGCTTTACATTCCTTGTCAAACGCACTATTCAAATGAGAAGAAGCCTGAATATCGAGGACAAGCTTCTGCCCCATTAAGTTATGGTACTCTTAAACCTCATAATCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

508

Amino Acids

55.71

Weight (kDa)

8.54

Isoelectric Point (pI)

56.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1240
Acc65I GGTACC 1 cut(s) 5
AccB1I GGYRCC 1 cut(s) 5
AccBSI CCGCTC 2 cut(s) 401, 1408
AccII CGCG 1 cut(s) 388
AcoI YGGCCR 2 cut(s) 594, 1152
AcsI RAATTY 1 cut(s) 512
AcuI CTGAAG 1 cut(s) 12
AfaI GTAC 3 cut(s) 7, 879, 1501
AfiI CCNNNNNNNGG 2 cut(s) 632, 1407
AgsI TTSAA 5 cut(s) 83, 517, 580, 826, 1446
AjnI CCWGG 1 cut(s) 1083
AjuI GAANNNNNNNTTGG 7 cut(s) 34, 99, 131, 953, 985, 1120, 1152
AluBI AGCT 7 cut(s) 132, 454, 611, 739, 760, 1222, 1478
AluI AGCT 7 cut(s) 132, 454, 611, 739, 760, 1222, 1478
Alw21I GWGCWC 1 cut(s) 1109
AlwNI CAGNNNCTG 2 cut(s) 1205, 1395
Ama87I CYCGRG 1 cut(s) 973
AoxI GGCC 4 cut(s) 594, 1123, 1152, 1386
ApeKI GCWGC 2 cut(s) 129, 1222
ApoI RAATTY 1 cut(s) 512
Asp718I GGTACC 1 cut(s) 5
AspS9I GGNCC 6 cut(s) 977, 1024, 1124, 1274, 1336, 1410
AsuHPI GGTGA 9 cut(s) 249, 267, 291, 315, 339, 357, 517, 927, 1255
AvaI CYCGRG 1 cut(s) 973
AvaII GGWCC 5 cut(s) 977, 1024, 1274, 1336, 1410
BaeI ACNNNNGTAYC 2 cut(s) 1312, 1345
BalI TGGCCA 1 cut(s) 1154
BanI GGYRCC 1 cut(s) 5
BbsI GAAGAC 1 cut(s) 174
Bbv12I GWGCWC 1 cut(s) 1109
BbvCI CCTCAGC 1 cut(s) 746
BbvI GCAGC 2 cut(s) 141, 1209
BccI CCATC 5 cut(s) 280, 304, 328, 370, 1153
BceAI ACGGC 1 cut(s) 238
BciT130I CCWGG 1 cut(s) 1085
BclI TGATCA 1 cut(s) 1293
BfaI CTAG 1 cut(s) 641
BfmI CTRYAG 1 cut(s) 133
BglII AGATCT 1 cut(s) 814
BisI GCNGC 5 cut(s) 127, 130, 203, 239, 1223
BlpI GCTNAGC 1 cut(s) 612
BlsI GCNGC 5 cut(s) 128, 131, 204, 240, 1224
Bme1390I CCNGG 1 cut(s) 1085
Bme18I GGWCC 5 cut(s) 977, 1024, 1274, 1336, 1410
BmeT110I CYCGRG 1 cut(s) 973
BmgT120I GGNCC 6 cut(s) 977, 1024, 1124, 1274, 1336, 1410
BmiI GGNNCC 3 cut(s) 7, 931, 978
BmrFI CCNGG 1 cut(s) 1085
BmsI GCATC 3 cut(s) 486, 910, 1013
BpiI GAAGAC 1 cut(s) 174
BpmI CTGGAG 1 cut(s) 201
Bpu10I CCTNAGC 1 cut(s) 746
Bpu1102I GCTNAGC 1 cut(s) 612
BsaJI CCNNGG 3 cut(s) 102, 835, 1061
BsaWI WCCGGW 2 cut(s) 819, 1276
Bsc4I CCNNNNNNNGG 2 cut(s) 632, 1407
Bse118I RCCGGY 1 cut(s) 596
Bse1I ACTGG 2 cut(s) 218, 646
Bse3DI GCAATG 2 cut(s) 540, 607
BseBI CCWGG 1 cut(s) 1085
BseDI CCNNGG 3 cut(s) 102, 835, 1061
BseGI GGATG 2 cut(s) 459, 713
BseLI CCNNNNNNNGG 2 cut(s) 632, 1407
BseMI GCAATG 2 cut(s) 540, 607
BseMII CTCAG 5 cut(s) 711, 760, 897, 1062, 1197
BseNI ACTGG 2 cut(s) 218, 646
BseRI GAGGAG 4 cut(s) 132, 180, 252, 922
BseXI GCAGC 2 cut(s) 141, 1209
BseYI CCCAGC 1 cut(s) 764
BsgI GTGCAG 1 cut(s) 1303
Bsh1236I CGCG 1 cut(s) 388
Bsh1285I CGRYCG 1 cut(s) 386
BshFI GGCC 4 cut(s) 596, 1125, 1154, 1388
BshNI GGYRCC 1 cut(s) 5
BsiEI CGRYCG 1 cut(s) 386
BsiHKAI GWGCWC 1 cut(s) 1109
BsiHKCI CYCGRG 1 cut(s) 973
BsiSI CCGG 4 cut(s) 567, 597, 820, 1277
BslFI GGGAC 2 cut(s) 686, 1383
BslI CCNNNNNNNGG 2 cut(s) 632, 1407
BsmFI GGGAC 2 cut(s) 686, 1383
BsnI GGCC 4 cut(s) 596, 1125, 1154, 1388
BsoBI CYCGRG 1 cut(s) 973
Bsp1286I GDGCHC 1 cut(s) 1109
Bsp143I GATC 4 cut(s) 814, 1293, 1345, 1352
Bsp1720I GCTNAGC 1 cut(s) 612
Bsp19I CCATGG 1 cut(s) 1061
BspANI GGCC 4 cut(s) 596, 1125, 1154, 1388
BspCNI CTCAG 5 cut(s) 710, 759, 898, 1061, 1198
BspFNI CGCG 1 cut(s) 388
BspLI GGNNCC 3 cut(s) 7, 931, 978
BspT107I GGYRCC 1 cut(s) 5
BsrBI CCGCTC 2 cut(s) 401, 1408
BsrDI GCAATG 2 cut(s) 540, 607
BsrFI RCCGGY 1 cut(s) 596
BsrI ACTGG 2 cut(s) 218, 646
BssAI RCCGGY 1 cut(s) 596
BssECI CCNNGG 3 cut(s) 102, 835, 1061
BssMI GATC 4 cut(s) 814, 1293, 1345, 1352
BssT1I CCWWGG 2 cut(s) 102, 1061
Bst2UI CCWGG 1 cut(s) 1085
Bst4CI ACNGT 4 cut(s) 591, 635, 1201, 1397
Bst6I CTCTTC 2 cut(s) 887, 1034
BstC8I GCNNGC 7 cut(s) 200, 236, 598, 762, 1147, 1220, 1227
BstDEI CTNAG 9 cut(s) 612, 697, 746, 788, 811, 906, 1048, 1206, 1383
BstDSI CCRYGG 2 cut(s) 835, 1061
BstF5I GGATG 2 cut(s) 459, 713
BstFNI CGCG 1 cut(s) 388
BstKTI GATC 4 cut(s) 817, 1296, 1348, 1355
BstMBI GATC 4 cut(s) 814, 1293, 1345, 1352
BstMCI CGRYCG 1 cut(s) 386
BstMWI GCNNNNNNNGC 3 cut(s) 135, 1151, 1414
BstNI CCWGG 1 cut(s) 1085
BstSCI CCNGG 1 cut(s) 1083
BstSFI CTRYAG 1 cut(s) 133
BstUI CGCG 1 cut(s) 388
BstV1I GCAGC 2 cut(s) 141, 1209
BstV2I GAAGAC 1 cut(s) 174
BstX2I RGATCY 1 cut(s) 814
BstXI CCANNNNNNTGG 1 cut(s) 1193
BstYI RGATCY 1 cut(s) 814
BsuRI GGCC 4 cut(s) 596, 1125, 1154, 1388
BtgI CCRYGG 2 cut(s) 835, 1061
BtsCI GGATG 2 cut(s) 459, 713
BtsIMutI CAGTG 3 cut(s) 225, 903, 1206
Cac8I GCNNGC 7 cut(s) 200, 236, 598, 762, 1147, 1220, 1227
CaiI CAGNNNCTG 2 cut(s) 1205, 1395
Cfr10I RCCGGY 1 cut(s) 596
Cfr13I GGNCC 6 cut(s) 977, 1024, 1124, 1274, 1336, 1410
CpoI CGGWCCG 1 cut(s) 1274
Csp6I GTAC 3 cut(s) 6, 878, 1500
CspI CGGWCCG 1 cut(s) 1274
CviAII CATG 7 cut(s) 71, 464, 489, 671, 1062, 1414, 1521
CviQI GTAC 3 cut(s) 6, 878, 1500
DdeI CTNAG 9 cut(s) 612, 697, 746, 788, 811, 906, 1048, 1206, 1383
DpnI GATC 4 cut(s) 816, 1295, 1347, 1354
DpnII GATC 4 cut(s) 814, 1293, 1345, 1352
DrdI GACNNNNNNGTC 1 cut(s) 1240
DseDI GACNNNNNNGTC 1 cut(s) 1240
EaeI YGGCCR 2 cut(s) 594, 1152
Eam1104I CTCTTC 2 cut(s) 887, 1034
EarI CTCTTC 2 cut(s) 887, 1034
EciI GGCGGA 2 cut(s) 174, 360
Eco130I CCWWGG 2 cut(s) 102, 1061
Eco47I GGWCC 5 cut(s) 977, 1024, 1274, 1336, 1410
Eco57I CTGAAG 1 cut(s) 12
Eco88I CYCGRG 1 cut(s) 973
EcoO109I RGGNCCY 1 cut(s) 1024
EcoRII CCWGG 1 cut(s) 1083
EcoT14I CCWWGG 2 cut(s) 102, 1061
ErhI CCWWGG 2 cut(s) 102, 1061
FaeI CATG 7 cut(s) 74, 467, 492, 674, 1065, 1417, 1524
FaqI GGGAC 2 cut(s) 686, 1383
FatI CATG 7 cut(s) 70, 463, 488, 670, 1061, 1413, 1520
FauI CCCGC 4 cut(s) 207, 243, 406, 1234
FauNDI CATATG 1 cut(s) 778
FbaI TGATCA 1 cut(s) 1293
Fnu4HI GCNGC 5 cut(s) 127, 130, 203, 239, 1223
FokI GGATG 2 cut(s) 446, 700
Fsp4HI GCNGC 5 cut(s) 127, 130, 203, 239, 1223
FspBI CTAG 1 cut(s) 641
GluI GCNGC 5 cut(s) 127, 130, 203, 239, 1223
GsaI CCCAGC 1 cut(s) 768
GsuI CTGGAG 1 cut(s) 201
HaeIII GGCC 4 cut(s) 596, 1125, 1154, 1388
HapII CCGG 4 cut(s) 567, 597, 820, 1277
Hin1II CATG 7 cut(s) 74, 467, 492, 674, 1065, 1417, 1524
HincII GTYRAC 1 cut(s) 574
HindII GTYRAC 1 cut(s) 574
HindIII AAGCTT 2 cut(s) 758, 1476
HinfI GANTC 2 cut(s) 913, 1165
HpaII CCGG 4 cut(s) 567, 597, 820, 1277
HphI GGTGA 9 cut(s) 249, 267, 291, 315, 339, 357, 517, 927, 1255
Hpy166II GTNNAC 1 cut(s) 574
Hpy188I TCNGA 4 cut(s) 405, 431, 449, 1274
Hpy188III TCNNGA 4 cut(s) 703, 917, 1297, 1318
Hpy8I GTNNAC 1 cut(s) 574
Hpy99I CGWCG 1 cut(s) 872
HpyAV CCTTC 4 cut(s) 77, 354, 487, 632
HpyCH4III ACNGT 4 cut(s) 591, 635, 1201, 1397
HpyCH4IV ACGT 3 cut(s) 783, 870, 1314
HpyCH4V TGCA 7 cut(s) 67, 223, 419, 510, 533, 1218, 1284
HpyF10VI GCNNNNNNNGC 3 cut(s) 135, 1151, 1414
HpyF3I CTNAG 9 cut(s) 612, 697, 746, 788, 811, 906, 1048, 1206, 1383
HpySE526I ACGT 3 cut(s) 783, 870, 1314
Hsp92II CATG 7 cut(s) 74, 467, 492, 674, 1065, 1417, 1524
KpnI GGTACC 1 cut(s) 9
KroI GCCGGC 1 cut(s) 596
KroNI GCCGGC 1 cut(s) 598
Ksp22I TGATCA 1 cut(s) 1293
Kzo9I GATC 4 cut(s) 814, 1293, 1345, 1352
LmnI GCTCC 3 cut(s) 154, 406, 935
Lsp1109I GCAGC 2 cut(s) 141, 1209
LweI GCATC 3 cut(s) 486, 910, 1013
MaeI CTAG 1 cut(s) 641
MaeII ACGT 3 cut(s) 783, 870, 1314
MaeIII GTNAC 2 cut(s) 255, 648
MalI GATC 4 cut(s) 816, 1295, 1347, 1354
MbiI CCGCTC 2 cut(s) 401, 1408
MboI GATC 4 cut(s) 814, 1293, 1345, 1352
MboII GAAGA 6 cut(s) 179, 853, 874, 1021, 1369, 1465
MfeI CAATTG 1 cut(s) 1324
MflI RGATCY 1 cut(s) 814
MhlI GDGCHC 1 cut(s) 1109
MlsI TGGCCA 1 cut(s) 1154
MluCI AATT 7 cut(s) 13, 435, 512, 685, 1128, 1187, 1324
MluNI TGGCCA 1 cut(s) 1154
MmeI TCCRAC 2 cut(s) 705, 1252
Mox20I TGGCCA 1 cut(s) 1154
MroNI GCCGGC 1 cut(s) 596
MscI TGGCCA 1 cut(s) 1154
MseI TTAA 6 cut(s) 723, 1080, 1118, 1341, 1490, 1506
Msp20I TGGCCA 1 cut(s) 1154
MspI CCGG 4 cut(s) 567, 597, 820, 1277
MspR9I CCNGG 1 cut(s) 1085
MunI CAATTG 1 cut(s) 1324
MvaI CCWGG 1 cut(s) 1085
MvnI CGCG 1 cut(s) 388
MwoI GCNNNNNNNGC 3 cut(s) 135, 1151, 1414
NaeI GCCGGC 1 cut(s) 598
NcoI CCATGG 1 cut(s) 1061
NdeI CATATG 1 cut(s) 778
NdeII GATC 4 cut(s) 814, 1293, 1345, 1352
NgoMIV GCCGGC 1 cut(s) 596
NlaIII CATG 7 cut(s) 74, 467, 492, 674, 1065, 1417, 1524
NlaIV GGNNCC 3 cut(s) 7, 931, 978
NmuCI GTSAC 1 cut(s) 255
PcsI WCGNNNNNNNCGW 2 cut(s) 445, 1241
PdiI GCCGGC 1 cut(s) 598
PfeI GAWTC 2 cut(s) 913, 1165
PkrI GCNGC 5 cut(s) 128, 131, 204, 240, 1224
PpuMI RGGWCCY 1 cut(s) 1024
Psp5II RGGWCCY 1 cut(s) 1024
Psp6I CCWGG 1 cut(s) 1083
PspFI CCCAGC 1 cut(s) 764
PspGI CCWGG 1 cut(s) 1083
PspN4I GGNNCC 3 cut(s) 7, 931, 978
PspPI GGNCC 6 cut(s) 977, 1024, 1124, 1274, 1336, 1410
PspPPI RGGWCCY 1 cut(s) 1024
PstNI CAGNNNCTG 2 cut(s) 1205, 1395
PsuI RGATCY 1 cut(s) 814
RsaI GTAC 3 cut(s) 7, 879, 1501
RsaNI GTAC 3 cut(s) 6, 878, 1500
Rsr2I CGGWCCG 1 cut(s) 1274
RsrII CGGWCCG 1 cut(s) 1274
SaqAI TTAA 6 cut(s) 723, 1080, 1118, 1341, 1490, 1506
SatI GCNGC 5 cut(s) 127, 130, 203, 239, 1223
Sau3AI GATC 4 cut(s) 814, 1293, 1345, 1352
Sau96I GGNCC 6 cut(s) 977, 1024, 1124, 1274, 1336, 1410
ScrFI CCNGG 1 cut(s) 1085
SduI GDGCHC 1 cut(s) 1109
SfaNI GCATC 3 cut(s) 486, 910, 1013
SfcI CTRYAG 1 cut(s) 133
SinI GGWCC 5 cut(s) 977, 1024, 1274, 1336, 1410
Sse9I AATT 7 cut(s) 13, 435, 512, 685, 1128, 1187, 1324
SspMI CTAG 1 cut(s) 641
StyD4I CCNGG 1 cut(s) 1083
StyI CCWWGG 2 cut(s) 102, 1061
TaaI ACNGT 4 cut(s) 591, 635, 1201, 1397
TaiI ACGT 3 cut(s) 786, 873, 1317
TaqI TCGA 3 cut(s) 867, 1098, 1468
TasI AATT 7 cut(s) 13, 435, 512, 685, 1128, 1187, 1324
TatI WGTACW 1 cut(s) 877
TauI GCSGC 3 cut(s) 129, 205, 241
TfiI GAWTC 2 cut(s) 913, 1165
Tru1I TTAA 6 cut(s) 723, 1080, 1118, 1341, 1490, 1506
Tru9I TTAA 6 cut(s) 723, 1080, 1118, 1341, 1490, 1506
TscAI CASTG 3 cut(s) 225, 910, 1206
TseFI GTSAC 1 cut(s) 255
TseI GCWGC 2 cut(s) 129, 1222
Tsp45I GTSAC 1 cut(s) 255
TspDTI ATGAA 1 cut(s) 618
TspGWI ACGGA 1 cut(s) 824
TspRI CASTG 3 cut(s) 225, 910, 1206
VpaK11BI GGWCC 5 cut(s) 977, 1024, 1274, 1336, 1410
XapI RAATTY 1 cut(s) 512
XspI CTAG 1 cut(s) 641
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.