Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001163.1

Orthogroup ID

OG0004065

Physical Location & Seq

Genomic Coordinates Forward (+)

154890 .. 157137

Gene Structure 2248 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001163.1_g000029.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1854 bp

atgggtaccaacaattctttctttgcttcagttttgctttcactacttctgctacatttgtgtttgcaacatgatgtagttgaaggtgctgaaagagaagccttggaaataatcattggtggtggcggcagctacagccctcctcctgctccctcccccgaatacgaagaatgccctccccctccgcctcctccttgcccgccgccaccactcctgtcaccgccacctccatcaccaccgccgccgtcacctcctccaccaccatcaccaccaccgccgtcacctcctccaccaccatcaccaccaccgccgtcacctcctccaccaccatcaccaccaccgccgtcacctcctccaccaccatcaccaccaccgccgtcacctcctccaccaccatcaccaccaccgccgtcacctcctccaccaccatcaccaccaccgccgatgtgtgcaagcaaaaatggctacagccctcctcctgctccctcccccgaatacgaagaatgccctccccctccgcctcctccttgcccgccgccaccactcctgtcaccgccacctccatcaccaccgccgccgtcacctcctccaccaccatcaccaccaccgccgtcacctcctccaccaccatcaccaccaccgccgtcacctcctccaccaccatcgccgccacctccaccgccaccatcacctccaccacgaccgcgaccgcgaccgcgaccaccaccccctccgaacaccagacttgcaaatgccctccgagtaattcgtaagttcaaaaagctaatcgtcgaagacccatacaaaatcacaaaaacatggaacggcaatgatccttgcaaattcaagggcttcacctgtgcaatgttccctgacgataaacaaatggcagtcgccggagttgacttcaatggcaaacggttggccggtaataaaacagctaagcaaccccttccccttgacggtttcctagaccagttaccagagttggtgtttttccatgccaactccaacaatttcacaggctcagtcccgaaagacacatccaaaattaaatacttctacgagcttgacctcagcaacaacaagcttgatgggggtttcccacatgaagttctaagtgccaaaaatttgacattcttagatctccggttcaacaatttccaggggtcagttccacccgaagtgttcttcctgcgcgttgatgtactcttcctcaacaacaaccatttcattgagcagattcctgatgctcttggctcctcaccagcacattatctcacttttgccaacaacaagttctggggtccaatcccaaatagcattggcagagcatcaaaaacgctttatgaggtcctcttcctcaacaaccaactctcagggtgtttgccatgggaaatcggcaaacttaaccaggcaaccttgttcgatgtgagcaccaactacttaacaggcccaatacctcattcctttgcttgcttggccaagatggagattctggtcttggccaacaaccagttctatggaacagtgcctgagttggtatgcaagctgcccgtcttgaggaacttgtcgttagcaaacaactattttacccaagtcggaccggagtgcagaaaactgatcaataaagggtttctcaacgtcaagaacaattgtatcttggaccttaaagatcaaagatcaaagagtgattgtgcttggttcttctctaaggccagacactgtcccaacgagcggtccatgctttacattccttgtcaaacgcactattcaaatgagaggaagcctgaacatcaaggacaagcttctgccccattaagttatggcactcttaaaccgcataatccgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2

Protein Analysis

617

Amino Acids

66.63

Weight (kDa)

8.48

Isoelectric Point (pI)

89.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004065)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49750 AT3G19320
fragaria_vesca	FvH4_2g05530
malus_domestica	MD00G1014300.v1.1 MD05G1086700.v1.1
prunus_persica	Prupe.8G131400_v2.0.a1 Prupe.8G131500_v2.0.a1
pyrus_communis	pycom05g08610 pycom10g08130
rosa_chinensis	RchiOBHm_Chr4g0387761 RchiOBHm_Chr6g0255781 RchiOBHm_Chr6g0255841
rosa_laevigata	RLG00000014812 RLG00000014813
rosa_multiflora	Rmu_sc0001163.1_g000027 Rmu_sc0001163.1_g000029 Rmu_sc0004935.1_g000023
rosa_roxburghii	Rroxscaffold_7G00209620 Rroxscaffold_7G00209650
rosa_rugosa	Rorug05G0561500 Rorug05G0561700
rosa_samantha	Rh1AG424200 Rh4BG013200 Rh6AG079500 Rh6AG079800 Rh6BG072600 Rh6BG072700 Rh6CG070700 Rh6CG070800 Rh6DG068000 Rh6DG068100
rosa_wichuraiana	Rw6G006850 Rw6G006880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	5
AccB1I	GGYRCC	1 cut(s)	5
AccBSI	CCGCTC	1 cut(s)	1738
AccII	CGCG	4 cut(s)	706, 712, 718, 1200
AclWI	GGATC	1 cut(s)	827
AcoI	YGGCCR	3 cut(s)	924, 1482, 1506
AcsI	RAATTY	2 cut(s)	842, 1129
AcuI	CTGAAG	1 cut(s)	12
AfaI	GTAC	2 cut(s)	7, 1209
AfiI	CCNNNNNNNGG	3 cut(s)	962, 1563, 1737
AgsI	TTSAA	6 cut(s)	83, 778, 847, 910, 1156, 1776
AjnI	CCWGG	2 cut(s)	1164, 1413
AjuI	GAANNNNNNNTTGG	9 cut(s)	34, 99, 131, 1283, 1315, 1450, 1482, 1502, 1534
AluBI	AGCT	7 cut(s)	132, 784, 941, 1069, 1090, 1552, 1808
AluI	AGCT	7 cut(s)	132, 784, 941, 1069, 1090, 1552, 1808
Alw21I	GWGCWC	1 cut(s)	1439
AlwI	GGATC	1 cut(s)	827
AlwNI	CAGNNNCTG	2 cut(s)	1535, 1725
AoxI	GGCC	5 cut(s)	924, 1453, 1482, 1506, 1716
ApeKI	GCWGC	2 cut(s)	129, 1552
ApoI	RAATTY	2 cut(s)	842, 1129
Asp718I	GGTACC	1 cut(s)	5
AspLEI	GCGC	1 cut(s)	1200
AspS9I	GGNCC	6 cut(s)	1307, 1354, 1454, 1604, 1666, 1740
AvaII	GGWCC	5 cut(s)	1307, 1354, 1604, 1666, 1740
BaeI	ACNNNNGTAYC	2 cut(s)	1642, 1675
BalI	TGGCCA	2 cut(s)	1484, 1508
BanI	GGYRCC	1 cut(s)	5
BbsI	GAAGAC	1 cut(s)	801
Bbv12I	GWGCWC	1 cut(s)	1439
BbvCI	CCTCAGC	1 cut(s)	1076
BbvI	GCAGC	2 cut(s)	141, 1539
BciT130I	CCWGG	2 cut(s)	1166, 1415
BclI	TGATCA	1 cut(s)	1623
BfaI	CTAG	1 cut(s)	971
BfmI	CTRYAG	2 cut(s)	133, 466
BglII	AGATCT	1 cut(s)	1144
BisI	GCNGC	8 cut(s)	127, 130, 203, 242, 536, 575, 668, 1553
BlpI	GCTNAGC	1 cut(s)	942
BlsI	GCNGC	8 cut(s)	128, 131, 204, 243, 537, 576, 669, 1554
Bme1390I	CCNGG	2 cut(s)	1166, 1415
Bme18I	GGWCC	5 cut(s)	1307, 1354, 1604, 1666, 1740
BmgT120I	GGNCC	6 cut(s)	1307, 1354, 1454, 1604, 1666, 1740
BmiI	GGNNCC	3 cut(s)	7, 1261, 1308
BmrFI	CCNGG	2 cut(s)	1166, 1415
BmsI	GCATC	2 cut(s)	1240, 1343
BpiI	GAAGAC	1 cut(s)	801
Bpu10I	CCTNAGC	1 cut(s)	1076
Bpu1102I	GCTNAGC	1 cut(s)	942
BpuEI	CTTGAG	1 cut(s)	1582
BsaJI	CCNNGG	3 cut(s)	102, 1165, 1391
BsaWI	WCCGGW	2 cut(s)	1149, 1606
Bsc4I	CCNNNNNNNGG	3 cut(s)	962, 1563, 1737
Bse118I	RCCGGY	1 cut(s)	926
Bse1I	ACTGG	2 cut(s)	976, 1516
Bse3DI	GCAATG	2 cut(s)	835, 870
BseBI	CCWGG	2 cut(s)	1166, 1415
BseDI	CCNNGG	3 cut(s)	102, 1165, 1391
BseGI	GGATG	1 cut(s)	1043
BseLI	CCNNNNNNNGG	3 cut(s)	962, 1563, 1737
BseMI	GCAATG	2 cut(s)	835, 870
BseMII	CTCAG	4 cut(s)	1041, 1090, 1392, 1527
BseNI	ACTGG	2 cut(s)	976, 1516
BseXI	GCAGC	2 cut(s)	141, 1539
BsgI	GTGCAG	1 cut(s)	1633
Bsh1236I	CGCG	4 cut(s)	706, 712, 718, 1200
Bsh1285I	CGRYCG	3 cut(s)	704, 710, 716
BshFI	GGCC	5 cut(s)	926, 1455, 1484, 1508, 1718
BshNI	GGYRCC	1 cut(s)	5
BsiEI	CGRYCG	3 cut(s)	704, 710, 716
BsiHKAI	GWGCWC	1 cut(s)	1439
BsiSI	CCGG	4 cut(s)	897, 927, 1150, 1607
BslFI	GGGAC	2 cut(s)	1016, 1713
BslI	CCNNNNNNNGG	3 cut(s)	962, 1563, 1737
BsmFI	GGGAC	2 cut(s)	1016, 1713
BsmI	GAATGC	2 cut(s)	176, 509
BsnI	GGCC	5 cut(s)	926, 1455, 1484, 1508, 1718
Bsp1286I	GDGCHC	1 cut(s)	1439
Bsp143I	GATC	5 cut(s)	832, 1144, 1623, 1675, 1682
Bsp1720I	GCTNAGC	1 cut(s)	942
Bsp19I	CCATGG	1 cut(s)	1391
BspANI	GGCC	5 cut(s)	926, 1455, 1484, 1508, 1718
BspCNI	CTCAG	4 cut(s)	1040, 1089, 1391, 1528
BspFNI	CGCG	4 cut(s)	706, 712, 718, 1200
BspLI	GGNNCC	3 cut(s)	7, 1261, 1308
BspPI	GGATC	1 cut(s)	827
BspT107I	GGYRCC	1 cut(s)	5
BsrBI	CCGCTC	1 cut(s)	1738
BsrDI	GCAATG	2 cut(s)	835, 870
BsrFI	RCCGGY	1 cut(s)	926
BsrI	ACTGG	2 cut(s)	976, 1516
BssAI	RCCGGY	1 cut(s)	926
BssECI	CCNNGG	3 cut(s)	102, 1165, 1391
BssMI	GATC	5 cut(s)	832, 1144, 1623, 1675, 1682
BssT1I	CCWWGG	2 cut(s)	102, 1391
Bst2UI	CCWGG	2 cut(s)	1166, 1415
Bst4CI	ACNGT	4 cut(s)	921, 965, 1531, 1727
Bst6I	CTCTTC	2 cut(s)	1217, 1364
BstC8I	GCNNGC	5 cut(s)	200, 454, 533, 1477, 1550
BstDEI	CTNAG	8 cut(s)	942, 1027, 1076, 1118, 1141, 1378, 1536, 1713
BstDSI	CCRYGG	1 cut(s)	1391
BstF5I	GGATG	1 cut(s)	1043
BstFNI	CGCG	4 cut(s)	706, 712, 718, 1200
BstHHI	GCGC	1 cut(s)	1200
BstKTI	GATC	5 cut(s)	835, 1147, 1626, 1678, 1685
BstMBI	GATC	5 cut(s)	832, 1144, 1623, 1675, 1682
BstMCI	CGRYCG	3 cut(s)	704, 710, 716
BstMWI	GCNNNNNNNGC	4 cut(s)	135, 462, 1481, 1744
BstNI	CCWGG	2 cut(s)	1166, 1415
BstSCI	CCNGG	2 cut(s)	1164, 1413
BstSFI	CTRYAG	2 cut(s)	133, 466
BstUI	CGCG	4 cut(s)	706, 712, 718, 1200
BstV1I	GCAGC	2 cut(s)	141, 1539
BstV2I	GAAGAC	1 cut(s)	801
BstX2I	RGATCY	1 cut(s)	1144
BstXI	CCANNNNNNTGG	1 cut(s)	1523
BstYI	RGATCY	1 cut(s)	1144
BsuRI	GGCC	5 cut(s)	926, 1455, 1484, 1508, 1718
BtgI	CCRYGG	1 cut(s)	1391
BtgZI	GCGATG	1 cut(s)	648
BtsCI	GGATG	1 cut(s)	1043
BtsIMutI	CAGTG	2 cut(s)	1536, 1723
Cac8I	GCNNGC	5 cut(s)	200, 454, 533, 1477, 1550
CaiI	CAGNNNCTG	2 cut(s)	1535, 1725
CfoI	GCGC	1 cut(s)	1200
Cfr10I	RCCGGY	1 cut(s)	926
Cfr13I	GGNCC	6 cut(s)	1307, 1354, 1454, 1604, 1666, 1740
CpoI	CGGWCCG	1 cut(s)	1604
Csp6I	GTAC	2 cut(s)	6, 1208
CspI	CGGWCCG	1 cut(s)	1604
CviAII	CATG	6 cut(s)	71, 819, 1001, 1109, 1392, 1744
CviQI	GTAC	2 cut(s)	6, 1208
DdeI	CTNAG	8 cut(s)	942, 1027, 1076, 1118, 1141, 1378, 1536, 1713
DpnI	GATC	5 cut(s)	834, 1146, 1625, 1677, 1684
DpnII	GATC	5 cut(s)	832, 1144, 1623, 1675, 1682
EaeI	YGGCCR	3 cut(s)	924, 1482, 1506
Eam1104I	CTCTTC	2 cut(s)	1217, 1364
EarI	CTCTTC	2 cut(s)	1217, 1364
EciI	GGCGGA	2 cut(s)	174, 507
Eco130I	CCWWGG	2 cut(s)	102, 1391
Eco47I	GGWCC	5 cut(s)	1307, 1354, 1604, 1666, 1740
Eco57I	CTGAAG	1 cut(s)	12
EcoO109I	RGGNCCY	1 cut(s)	1354
EcoRII	CCWGG	2 cut(s)	1164, 1413
EcoT14I	CCWWGG	2 cut(s)	102, 1391
ErhI	CCWWGG	2 cut(s)	102, 1391
FaeI	CATG	6 cut(s)	74, 822, 1004, 1112, 1395, 1747
FaqI	GGGAC	2 cut(s)	1016, 1713
FatI	CATG	6 cut(s)	70, 818, 1000, 1108, 1391, 1743
FauI	CCCGC	2 cut(s)	207, 540
FbaI	TGATCA	1 cut(s)	1623
Fnu4HI	GCNGC	8 cut(s)	127, 130, 203, 242, 536, 575, 668, 1553
FokI	GGATG	1 cut(s)	1030
Fsp4HI	GCNGC	8 cut(s)	127, 130, 203, 242, 536, 575, 668, 1553
FspBI	CTAG	1 cut(s)	971
GlaI	GCGC	1 cut(s)	1199
GluI	GCNGC	8 cut(s)	127, 130, 203, 242, 536, 575, 668, 1553
HaeIII	GGCC	5 cut(s)	926, 1455, 1484, 1508, 1718
HapII	CCGG	4 cut(s)	897, 927, 1150, 1607
HhaI	GCGC	1 cut(s)	1200
Hin1II	CATG	6 cut(s)	74, 822, 1004, 1112, 1395, 1747
Hin6I	GCGC	1 cut(s)	1198
HinP1I	GCGC	1 cut(s)	1198
HincII	GTYRAC	1 cut(s)	904
HindII	GTYRAC	1 cut(s)	904
HindIII	AAGCTT	2 cut(s)	1088, 1806
HinfI	GANTC	2 cut(s)	1243, 1495
HpaII	CCGG	4 cut(s)	897, 927, 1150, 1607
Hpy166II	GTNNAC	1 cut(s)	904
Hpy188I	TCNGA	3 cut(s)	735, 761, 1604
Hpy188III	TCNNGA	4 cut(s)	1033, 1247, 1561, 1648
Hpy8I	GTNNAC	1 cut(s)	904
Hpy99I	CGWCG	1 cut(s)	794
HpyAV	CCTTC	2 cut(s)	77, 962
HpyCH4III	ACNGT	4 cut(s)	921, 965, 1531, 1727
HpyCH4IV	ACGT	1 cut(s)	1644
HpyCH4V	TGCA	7 cut(s)	67, 452, 749, 840, 863, 1548, 1614
HpyF10VI	GCNNNNNNNGC	4 cut(s)	135, 462, 1481, 1744
HpyF3I	CTNAG	8 cut(s)	942, 1027, 1076, 1118, 1141, 1378, 1536, 1713
HpySE526I	ACGT	1 cut(s)	1644
Hsp92II	CATG	6 cut(s)	74, 822, 1004, 1112, 1395, 1747
HspAI	GCGC	1 cut(s)	1198
KpnI	GGTACC	1 cut(s)	9
Ksp22I	TGATCA	1 cut(s)	1623
Kzo9I	GATC	5 cut(s)	832, 1144, 1623, 1675, 1682
LmnI	GCTCC	3 cut(s)	154, 487, 1265
Lsp1109I	GCAGC	2 cut(s)	141, 1539
LweI	GCATC	2 cut(s)	1240, 1343
MaeI	CTAG	1 cut(s)	971
MaeII	ACGT	1 cut(s)	1644
MalI	GATC	5 cut(s)	834, 1146, 1625, 1677, 1684
MbiI	CCGCTC	1 cut(s)	1738
MboI	GATC	5 cut(s)	832, 1144, 1623, 1675, 1682
MboII	GAAGA	7 cut(s)	179, 512, 806, 1183, 1204, 1351, 1699
MfeI	CAATTG	1 cut(s)	1654
MflI	RGATCY	1 cut(s)	1144
MhlI	GDGCHC	1 cut(s)	1439
MlsI	TGGCCA	2 cut(s)	1484, 1508
MluCI	AATT	8 cut(s)	13, 765, 842, 1015, 1050, 1129, 1159, 1654
MluNI	TGGCCA	2 cut(s)	1484, 1508
MmeI	TCCRAC	2 cut(s)	1035, 1582
Mox20I	TGGCCA	2 cut(s)	1484, 1508
MscI	TGGCCA	2 cut(s)	1484, 1508
MseI	TTAA	6 cut(s)	1053, 1410, 1448, 1671, 1820, 1836
Msp20I	TGGCCA	2 cut(s)	1484, 1508
MspI	CCGG	4 cut(s)	897, 927, 1150, 1607
MspR9I	CCNGG	2 cut(s)	1166, 1415
MunI	CAATTG	1 cut(s)	1654
Mva1269I	GAATGC	2 cut(s)	176, 509
MvaI	CCWGG	2 cut(s)	1166, 1415
MvnI	CGCG	4 cut(s)	706, 712, 718, 1200
MwoI	GCNNNNNNNGC	4 cut(s)	135, 462, 1481, 1744
NcoI	CCATGG	1 cut(s)	1391
NdeII	GATC	5 cut(s)	832, 1144, 1623, 1675, 1682
NlaIII	CATG	6 cut(s)	74, 822, 1004, 1112, 1395, 1747
NlaIV	GGNNCC	3 cut(s)	7, 1261, 1308
PctI	GAATGC	2 cut(s)	176, 509
PfeI	GAWTC	2 cut(s)	1243, 1495
PflFI	GACNNNGTC	1 cut(s)	1725
PkrI	GCNGC	8 cut(s)	128, 131, 204, 243, 537, 576, 669, 1554
PpuMI	RGGWCCY	1 cut(s)	1354
Psp5II	RGGWCCY	1 cut(s)	1354
Psp6I	CCWGG	2 cut(s)	1164, 1413
PspGI	CCWGG	2 cut(s)	1164, 1413
PspN4I	GGNNCC	3 cut(s)	7, 1261, 1308
PspPI	GGNCC	6 cut(s)	1307, 1354, 1454, 1604, 1666, 1740
PspPPI	RGGWCCY	1 cut(s)	1354
PstNI	CAGNNNCTG	2 cut(s)	1535, 1725
PsuI	RGATCY	1 cut(s)	1144
PsyI	GACNNNGTC	1 cut(s)	1725
RsaI	GTAC	2 cut(s)	7, 1209
RsaNI	GTAC	2 cut(s)	6, 1208
Rsr2I	CGGWCCG	1 cut(s)	1604
RsrII	CGGWCCG	1 cut(s)	1604
SaqAI	TTAA	6 cut(s)	1053, 1410, 1448, 1671, 1820, 1836
SatI	GCNGC	8 cut(s)	127, 130, 203, 242, 536, 575, 668, 1553
Sau3AI	GATC	5 cut(s)	832, 1144, 1623, 1675, 1682
Sau96I	GGNCC	6 cut(s)	1307, 1354, 1454, 1604, 1666, 1740
ScrFI	CCNGG	2 cut(s)	1166, 1415
SduI	GDGCHC	1 cut(s)	1439
SfaNI	GCATC	2 cut(s)	1240, 1343
SfcI	CTRYAG	2 cut(s)	133, 466
SinI	GGWCC	5 cut(s)	1307, 1354, 1604, 1666, 1740
SmlI	CTYRAG	1 cut(s)	1561
SmoI	CTYRAG	1 cut(s)	1561
Sse9I	AATT	8 cut(s)	13, 765, 842, 1015, 1050, 1129, 1159, 1654
SspMI	CTAG	1 cut(s)	971
StyD4I	CCNGG	2 cut(s)	1164, 1413
StyI	CCWWGG	2 cut(s)	102, 1391
TaaI	ACNGT	4 cut(s)	921, 965, 1531, 1727
TaiI	ACGT	1 cut(s)	1647
TaqI	TCGA	2 cut(s)	792, 1428
TasI	AATT	8 cut(s)	13, 765, 842, 1015, 1050, 1129, 1159, 1654
TatI	WGTACW	1 cut(s)	1207
TauI	GCSGC	6 cut(s)	129, 205, 244, 538, 577, 670
TfiI	GAWTC	2 cut(s)	1243, 1495
Tru1I	TTAA	6 cut(s)	1053, 1410, 1448, 1671, 1820, 1836
Tru9I	TTAA	6 cut(s)	1053, 1410, 1448, 1671, 1820, 1836
TscAI	CASTG	2 cut(s)	1536, 1730
TseI	GCWGC	2 cut(s)	129, 1552
TspDTI	ATGAA	2 cut(s)	1125, 1222
TspGWI	ACGGA	1 cut(s)	1839
TspRI	CASTG	2 cut(s)	1536, 1730
Tth111I	GACNNNGTC	1 cut(s)	1725
VpaK11BI	GGWCC	5 cut(s)	1307, 1354, 1604, 1666, 1740
XapI	RAATTY	2 cut(s)	842, 1129
XspI	CTAG	1 cut(s)	971

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.