Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0004065

Physical Location & Seq

Genomic Coordinates Forward (+)

10998501 .. 11001139

Gene Structure 2639 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG072700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1500 bp

ATGGGTACCAACAATTCTTTCTTTGCTTCAGTTTTGCTTTCACTACTTCTGCTACATTTGTGTTTGCAACATGATGTAGTTGAAGGTGCTGAAAGAGAAGCCTTGGAAATAATCATTGGTGGTGGCGGCAGCTACAGCCCTCCTCCTGCTCCCTCCCCCGAATACGAAGAATGCCCTCCCCCTCCGCCTCCTCCTTGCCCGCCGCCACCATTCCCGCCACCGCCACCTCCATCACCACCGCCGCCGTCACCTCCTCCACCACCATCACCACCACCGCCGTCACCTCCTCCACCACCATCACCGCCACCTCCACCGCCACCTTCACCACGACTGCCACCATCACCTCCACCACGACCACGACCGCGACCACCACCCCCTCCGAACACCAGACTTGCAAATGCCCTCCGAGTAATTCGTAAGTTCCAAAAGCTAATCGTGGACGACCCATACCACATCAGAGACACATGGAAGGGCAATAATCCTTGCAAATTCAAGGGCTTCACCTGTGCAATGTTCCCTGACGATAAACAAATGGCAGTCGCCGGAGTTGACTTCAATGGCAAACGGTTGGCCGGCAATAAAACAGCTAAGCAACCCCTTCCCCTTGACGGTTTCCTAGACCAGTTACCAGAGTTGGTGTTTTTCCATGCCAACTCCAACAATTTCACAGGCTCAGTCCCGAAAGGCACATCCAAACTTAAATACTTCTACGAGCTTGACCTCAGCAACAACAAGCTTGATGGGGGTTTCCCATATGATGTTCTAAGTGCCCAAAATTTGACATTCTTAGATCTCCGGTTCAACAATTTCAGTGGGTCAGTTCCACCCCGAGTGTTCTTCCTGGACGTTGATGTACTCTTCCTCAACAACAACAATTTCATTGAGCAGATTCCTGATGCTCTTGGCTCCTCACCAGCACATTATCTCACTTTTGCCAACAACAAGTTCTGGGGTCCAATCCCAAATAGCATTGGCAAAGCATCAAAAACGCTTTATGAGGTCCTCTTCCTCAACAACCAACTATCAGGGTGTTTGCCATGGGAAATCGGCAAACTTAACCAGGCAACCTTGTTCGATGTGAGCACCAACTACTTAACAGGCCCAATACCTCATTCCTTTGCTTGCTTGGCCAAGATGGAGATTCTGGTCTTGGCCAACAACCAGTTCTATGGAACAGTGCCTGAGTTGGTATGCAAGCTGCCCGTCTTGAGGAACTTGTCGTTAGCAAACAACTATTTTACCCAAGTCGGACCGGAGTGCAGAAAACTGATCAATAAAGGGTTTCTCAACGTCAAGAACAATTGTATCTTGGACCTTAAAGATCAAAGATCAAAGAGTGATTGTGCTTGGTTCTTCTCTAAGGCCAGACACTGTCCCAACGAGCGGTCCATGCTTTACATTCCTTGTCAAACGCACTATTCAAATGAGAGGAAGCCTGAACATCGAGGACAAGCTTCTGCCCCATTAAGTTATGGCACTCTTAAACCGCATAATCCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2

Protein Analysis

499

Amino Acids

55.05

Weight (kDa)

8.76

Isoelectric Point (pI)

59.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004065)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49750 AT3G19320
fragaria_vesca	FvH4_2g05530
malus_domestica	MD00G1014300.v1.1 MD05G1086700.v1.1
prunus_persica	Prupe.8G131400_v2.0.a1 Prupe.8G131500_v2.0.a1
pyrus_communis	pycom05g08610 pycom10g08130
rosa_chinensis	RchiOBHm_Chr4g0387761 RchiOBHm_Chr6g0255781 RchiOBHm_Chr6g0255841
rosa_laevigata	RLG00000014812 RLG00000014813
rosa_multiflora	Rmu_sc0001163.1_g000027 Rmu_sc0001163.1_g000029 Rmu_sc0004935.1_g000023
rosa_roxburghii	Rroxscaffold_7G00209620 Rroxscaffold_7G00209650
rosa_rugosa	Rorug05G0561500 Rorug05G0561700
rosa_samantha	Rh1AG424200 Rh4BG013200 Rh6AG079500 Rh6AG079800 Rh6BG072600 Rh6BG072700 Rh6CG070700 Rh6CG070800 Rh6DG068000 Rh6DG068100
rosa_wichuraiana	Rw6G006850 Rw6G006880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	5
AccB1I	GGYRCC	1 cut(s)	5
AccBSI	CCGCTC	1 cut(s)	1384
AccII	CGCG	1 cut(s)	364
AcoI	YGGCCR	3 cut(s)	570, 1128, 1152
AcsI	RAATTY	2 cut(s)	488, 775
AcuI	CTGAAG	1 cut(s)	12
AfaI	GTAC	2 cut(s)	7, 855
AfiI	CCNNNNNNNGG	3 cut(s)	608, 1209, 1383
AgsI	TTSAA	5 cut(s)	83, 493, 556, 802, 1422
AjnI	CCWGG	2 cut(s)	840, 1059
AjuI	GAANNNNNNNTTGG	9 cut(s)	34, 99, 131, 929, 961, 1096, 1128, 1148, 1180
AluBI	AGCT	7 cut(s)	132, 430, 587, 715, 736, 1198, 1454
AluI	AGCT	7 cut(s)	132, 430, 587, 715, 736, 1198, 1454
Alw21I	GWGCWC	1 cut(s)	1085
Alw26I	GTCTC	1 cut(s)	453
AlwNI	CAGNNNCTG	2 cut(s)	1181, 1371
Ama87I	CYCGRG	1 cut(s)	828
AoxI	GGCC	5 cut(s)	570, 1099, 1128, 1152, 1362
ApeKI	GCWGC	2 cut(s)	129, 1198
ApoI	RAATTY	2 cut(s)	488, 775
Asp718I	GGTACC	1 cut(s)	5
AspS9I	GGNCC	6 cut(s)	953, 1000, 1100, 1250, 1312, 1386
AsuHPI	GGTGA	9 cut(s)	225, 240, 258, 273, 291, 315, 333, 493, 903
AvaI	CYCGRG	1 cut(s)	828
AvaII	GGWCC	5 cut(s)	953, 1000, 1250, 1312, 1386
BaeGI	GKGCMC	1 cut(s)	772
BaeI	ACNNNNGTAYC	2 cut(s)	1288, 1321
BalI	TGGCCA	2 cut(s)	1130, 1154
BanI	GGYRCC	1 cut(s)	5
Bbv12I	GWGCWC	1 cut(s)	1085
BbvCI	CCTCAGC	1 cut(s)	722
BbvI	GCAGC	2 cut(s)	141, 1185
BccI	CCATC	6 cut(s)	238, 271, 304, 346, 734, 1129
BceAI	ACGGC	2 cut(s)	229, 262
BciT130I	CCWGG	2 cut(s)	842, 1061
BclI	TGATCA	1 cut(s)	1269
BcoDI	GTCTC	1 cut(s)	453
BfaI	CTAG	1 cut(s)	617
BfmI	CTRYAG	1 cut(s)	133
BglII	AGATCT	1 cut(s)	790
BisI	GCNGC	5 cut(s)	127, 130, 203, 242, 1199
BlpI	GCTNAGC	1 cut(s)	588
BlsI	GCNGC	5 cut(s)	128, 131, 204, 243, 1200
Bme1390I	CCNGG	2 cut(s)	842, 1061
Bme18I	GGWCC	5 cut(s)	953, 1000, 1250, 1312, 1386
BmeT110I	CYCGRG	1 cut(s)	828
BmgT120I	GGNCC	6 cut(s)	953, 1000, 1100, 1250, 1312, 1386
BmiI	GGNNCC	3 cut(s)	7, 907, 954
BmrFI	CCNGG	2 cut(s)	842, 1061
BmsI	GCATC	2 cut(s)	886, 989
Bpu10I	CCTNAGC	1 cut(s)	722
Bpu1102I	GCTNAGC	1 cut(s)	588
BpuEI	CTTGAG	1 cut(s)	1228
BsaJI	CCNNGG	2 cut(s)	102, 1037
BsaWI	WCCGGW	2 cut(s)	795, 1252
Bsc4I	CCNNNNNNNGG	3 cut(s)	608, 1209, 1383
Bse118I	RCCGGY	1 cut(s)	572
Bse1I	ACTGG	2 cut(s)	622, 1162
Bse3DI	GCAATG	1 cut(s)	516
BseBI	CCWGG	2 cut(s)	842, 1061
BseDI	CCNNGG	2 cut(s)	102, 1037
BseGI	GGATG	1 cut(s)	689
BseLI	CCNNNNNNNGG	3 cut(s)	608, 1209, 1383
BseMI	GCAATG	1 cut(s)	516
BseMII	CTCAG	3 cut(s)	687, 736, 1173
BseNI	ACTGG	2 cut(s)	622, 1162
BseRI	GAGGAG	5 cut(s)	132, 180, 243, 276, 898
BseSI	GKGCMC	1 cut(s)	772
BseXI	GCAGC	2 cut(s)	141, 1185
BsgI	GTGCAG	1 cut(s)	1279
Bsh1236I	CGCG	1 cut(s)	364
Bsh1285I	CGRYCG	1 cut(s)	362
BshFI	GGCC	5 cut(s)	572, 1101, 1130, 1154, 1364
BshNI	GGYRCC	1 cut(s)	5
BsiEI	CGRYCG	1 cut(s)	362
BsiHKAI	GWGCWC	1 cut(s)	1085
BsiHKCI	CYCGRG	1 cut(s)	828
BsiSI	CCGG	4 cut(s)	543, 573, 796, 1253
BslFI	GGGAC	2 cut(s)	662, 1359
BslI	CCNNNNNNNGG	3 cut(s)	608, 1209, 1383
BsmAI	GTCTC	1 cut(s)	453
BsmFI	GGGAC	2 cut(s)	662, 1359
BsmI	GAATGC	1 cut(s)	176
BsnI	GGCC	5 cut(s)	572, 1101, 1130, 1154, 1364
BsoBI	CYCGRG	1 cut(s)	828
Bsp1286I	GDGCHC	2 cut(s)	772, 1085
Bsp143I	GATC	4 cut(s)	790, 1269, 1321, 1328
Bsp1720I	GCTNAGC	1 cut(s)	588
Bsp19I	CCATGG	1 cut(s)	1037
BspANI	GGCC	5 cut(s)	572, 1101, 1130, 1154, 1364
BspCNI	CTCAG	3 cut(s)	686, 735, 1174
BspFNI	CGCG	1 cut(s)	364
BspLI	GGNNCC	3 cut(s)	7, 907, 954
BspT107I	GGYRCC	1 cut(s)	5
BsrBI	CCGCTC	1 cut(s)	1384
BsrDI	GCAATG	1 cut(s)	516
BsrFI	RCCGGY	1 cut(s)	572
BsrI	ACTGG	2 cut(s)	622, 1162
BssAI	RCCGGY	1 cut(s)	572
BssECI	CCNNGG	2 cut(s)	102, 1037
BssMI	GATC	4 cut(s)	790, 1269, 1321, 1328
BssT1I	CCWWGG	2 cut(s)	102, 1037
Bst2UI	CCWGG	2 cut(s)	842, 1061
Bst4CI	ACNGT	4 cut(s)	567, 611, 1177, 1373
Bst6I	CTCTTC	2 cut(s)	863, 1010
BstC8I	GCNNGC	4 cut(s)	200, 574, 1123, 1196
BstDEI	CTNAG	7 cut(s)	588, 673, 722, 764, 787, 1182, 1359
BstDSI	CCRYGG	1 cut(s)	1037
BstF5I	GGATG	1 cut(s)	689
BstFNI	CGCG	1 cut(s)	364
BstKTI	GATC	4 cut(s)	793, 1272, 1324, 1331
BstMAI	GTCTC	1 cut(s)	453
BstMBI	GATC	4 cut(s)	790, 1269, 1321, 1328
BstMCI	CGRYCG	1 cut(s)	362
BstMWI	GCNNNNNNNGC	3 cut(s)	135, 1127, 1390
BstNI	CCWGG	2 cut(s)	842, 1061
BstSCI	CCNGG	2 cut(s)	840, 1059
BstSFI	CTRYAG	1 cut(s)	133
BstSLI	GKGCMC	1 cut(s)	772
BstUI	CGCG	1 cut(s)	364
BstV1I	GCAGC	2 cut(s)	141, 1185
BstX2I	RGATCY	1 cut(s)	790
BstXI	CCANNNNNNTGG	1 cut(s)	1169
BstYI	RGATCY	1 cut(s)	790
BsuRI	GGCC	5 cut(s)	572, 1101, 1130, 1154, 1364
BtgI	CCRYGG	1 cut(s)	1037
BtsCI	GGATG	1 cut(s)	689
BtsIMutI	CAGTG	3 cut(s)	817, 1182, 1369
Cac8I	GCNNGC	4 cut(s)	200, 574, 1123, 1196
CaiI	CAGNNNCTG	2 cut(s)	1181, 1371
Cfr10I	RCCGGY	1 cut(s)	572
Cfr13I	GGNCC	6 cut(s)	953, 1000, 1100, 1250, 1312, 1386
CpoI	CGGWCCG	1 cut(s)	1250
Csp6I	GTAC	2 cut(s)	6, 854
CspCI	CAANNNNNGTGG	2 cut(s)	793, 828
CspI	CGGWCCG	1 cut(s)	1250
CviAII	CATG	5 cut(s)	71, 465, 647, 1038, 1390
CviQI	GTAC	2 cut(s)	6, 854
DdeI	CTNAG	7 cut(s)	588, 673, 722, 764, 787, 1182, 1359
DpnI	GATC	4 cut(s)	792, 1271, 1323, 1330
DpnII	GATC	4 cut(s)	790, 1269, 1321, 1328
EaeI	YGGCCR	3 cut(s)	570, 1128, 1152
Eam1104I	CTCTTC	2 cut(s)	863, 1010
EarI	CTCTTC	2 cut(s)	863, 1010
EciI	GGCGGA	1 cut(s)	174
Eco130I	CCWWGG	2 cut(s)	102, 1037
Eco47I	GGWCC	5 cut(s)	953, 1000, 1250, 1312, 1386
Eco57I	CTGAAG	1 cut(s)	12
Eco88I	CYCGRG	1 cut(s)	828
EcoO109I	RGGNCCY	1 cut(s)	1000
EcoRII	CCWGG	2 cut(s)	840, 1059
EcoT14I	CCWWGG	2 cut(s)	102, 1037
ErhI	CCWWGG	2 cut(s)	102, 1037
FaeI	CATG	5 cut(s)	74, 468, 650, 1041, 1393
FaqI	GGGAC	2 cut(s)	662, 1359
FatI	CATG	5 cut(s)	70, 464, 646, 1037, 1389
FauI	CCCGC	2 cut(s)	207, 222
FauNDI	CATATG	1 cut(s)	754
FbaI	TGATCA	1 cut(s)	1269
Fnu4HI	GCNGC	5 cut(s)	127, 130, 203, 242, 1199
FokI	GGATG	1 cut(s)	676
Fsp4HI	GCNGC	5 cut(s)	127, 130, 203, 242, 1199
FspBI	CTAG	1 cut(s)	617
GluI	GCNGC	5 cut(s)	127, 130, 203, 242, 1199
HaeIII	GGCC	5 cut(s)	572, 1101, 1130, 1154, 1364
HapII	CCGG	4 cut(s)	543, 573, 796, 1253
Hin1II	CATG	5 cut(s)	74, 468, 650, 1041, 1393
HincII	GTYRAC	1 cut(s)	550
HindII	GTYRAC	1 cut(s)	550
HindIII	AAGCTT	2 cut(s)	734, 1452
HinfI	GANTC	2 cut(s)	889, 1141
HpaII	CCGG	4 cut(s)	543, 573, 796, 1253
HphI	GGTGA	9 cut(s)	225, 240, 258, 273, 291, 315, 333, 493, 903
Hpy166II	GTNNAC	2 cut(s)	439, 550
Hpy188I	TCNGA	4 cut(s)	381, 407, 458, 1250
Hpy188III	TCNNGA	4 cut(s)	679, 893, 1207, 1294
Hpy8I	GTNNAC	2 cut(s)	439, 550
HpyAV	CCTTC	4 cut(s)	77, 330, 463, 608
HpyCH4III	ACNGT	4 cut(s)	567, 611, 1177, 1373
HpyCH4IV	ACGT	2 cut(s)	846, 1290
HpyCH4V	TGCA	6 cut(s)	67, 395, 486, 509, 1194, 1260
HpyF10VI	GCNNNNNNNGC	3 cut(s)	135, 1127, 1390
HpyF3I	CTNAG	7 cut(s)	588, 673, 722, 764, 787, 1182, 1359
HpySE526I	ACGT	2 cut(s)	846, 1290
Hsp92II	CATG	5 cut(s)	74, 468, 650, 1041, 1393
KpnI	GGTACC	1 cut(s)	9
KroI	GCCGGC	1 cut(s)	572
KroNI	GCCGGC	1 cut(s)	574
Ksp22I	TGATCA	1 cut(s)	1269
Kzo9I	GATC	4 cut(s)	790, 1269, 1321, 1328
LmnI	GCTCC	2 cut(s)	154, 911
Lsp1109I	GCAGC	2 cut(s)	141, 1185
LweI	GCATC	2 cut(s)	886, 989
MaeI	CTAG	1 cut(s)	617
MaeII	ACGT	2 cut(s)	846, 1290
MaeIII	GTNAC	3 cut(s)	246, 279, 624
MalI	GATC	4 cut(s)	792, 1271, 1323, 1330
MbiI	CCGCTC	1 cut(s)	1384
MboI	GATC	4 cut(s)	790, 1269, 1321, 1328
MboII	GAAGA	5 cut(s)	179, 829, 850, 997, 1345
MfeI	CAATTG	1 cut(s)	1300
MflI	RGATCY	1 cut(s)	790
MhlI	GDGCHC	2 cut(s)	772, 1085
MlsI	TGGCCA	2 cut(s)	1130, 1154
MluCI	AATT	8 cut(s)	13, 411, 488, 661, 775, 805, 874, 1300
MluNI	TGGCCA	2 cut(s)	1130, 1154
MmeI	TCCRAC	2 cut(s)	681, 1228
Mox20I	TGGCCA	2 cut(s)	1130, 1154
MroNI	GCCGGC	1 cut(s)	572
MscI	TGGCCA	2 cut(s)	1130, 1154
MseI	TTAA	6 cut(s)	699, 1056, 1094, 1317, 1466, 1482
Msp20I	TGGCCA	2 cut(s)	1130, 1154
MspI	CCGG	4 cut(s)	543, 573, 796, 1253
MspR9I	CCNGG	2 cut(s)	842, 1061
MunI	CAATTG	1 cut(s)	1300
Mva1269I	GAATGC	1 cut(s)	176
MvaI	CCWGG	2 cut(s)	842, 1061
MvnI	CGCG	1 cut(s)	364
MwoI	GCNNNNNNNGC	3 cut(s)	135, 1127, 1390
NaeI	GCCGGC	1 cut(s)	574
NcoI	CCATGG	1 cut(s)	1037
NdeI	CATATG	1 cut(s)	754
NdeII	GATC	4 cut(s)	790, 1269, 1321, 1328
NgoMIV	GCCGGC	1 cut(s)	572
NlaIII	CATG	5 cut(s)	74, 468, 650, 1041, 1393
NlaIV	GGNNCC	3 cut(s)	7, 907, 954
NmuCI	GTSAC	2 cut(s)	246, 279
PctI	GAATGC	1 cut(s)	176
PdiI	GCCGGC	1 cut(s)	574
PfeI	GAWTC	2 cut(s)	889, 1141
PflFI	GACNNNGTC	1 cut(s)	1371
PfoI	TCCNGGA	1 cut(s)	840
PkrI	GCNGC	5 cut(s)	128, 131, 204, 243, 1200
PpuMI	RGGWCCY	1 cut(s)	1000
Psp5II	RGGWCCY	1 cut(s)	1000
Psp6I	CCWGG	2 cut(s)	840, 1059
PspGI	CCWGG	2 cut(s)	840, 1059
PspN4I	GGNNCC	3 cut(s)	7, 907, 954
PspPI	GGNCC	6 cut(s)	953, 1000, 1100, 1250, 1312, 1386
PspPPI	RGGWCCY	1 cut(s)	1000
PstNI	CAGNNNCTG	2 cut(s)	1181, 1371
PsuI	RGATCY	1 cut(s)	790
PsyI	GACNNNGTC	1 cut(s)	1371
RsaI	GTAC	2 cut(s)	7, 855
RsaNI	GTAC	2 cut(s)	6, 854
Rsr2I	CGGWCCG	1 cut(s)	1250
RsrII	CGGWCCG	1 cut(s)	1250
SaqAI	TTAA	6 cut(s)	699, 1056, 1094, 1317, 1466, 1482
SatI	GCNGC	5 cut(s)	127, 130, 203, 242, 1199
Sau3AI	GATC	4 cut(s)	790, 1269, 1321, 1328
Sau96I	GGNCC	6 cut(s)	953, 1000, 1100, 1250, 1312, 1386
ScrFI	CCNGG	2 cut(s)	842, 1061
SduI	GDGCHC	2 cut(s)	772, 1085
SfaNI	GCATC	2 cut(s)	886, 989
SfcI	CTRYAG	1 cut(s)	133
SinI	GGWCC	5 cut(s)	953, 1000, 1250, 1312, 1386
SmlI	CTYRAG	1 cut(s)	1207
SmoI	CTYRAG	1 cut(s)	1207
Sse9I	AATT	8 cut(s)	13, 411, 488, 661, 775, 805, 874, 1300
SspMI	CTAG	1 cut(s)	617
StyD4I	CCNGG	2 cut(s)	840, 1059
StyI	CCWWGG	2 cut(s)	102, 1037
TaaI	ACNGT	4 cut(s)	567, 611, 1177, 1373
TaiI	ACGT	2 cut(s)	849, 1293
TaqI	TCGA	2 cut(s)	1074, 1444
TasI	AATT	8 cut(s)	13, 411, 488, 661, 775, 805, 874, 1300
TatI	WGTACW	1 cut(s)	853
TauI	GCSGC	3 cut(s)	129, 205, 244
TfiI	GAWTC	2 cut(s)	889, 1141
Tru1I	TTAA	6 cut(s)	699, 1056, 1094, 1317, 1466, 1482
Tru9I	TTAA	6 cut(s)	699, 1056, 1094, 1317, 1466, 1482
TscAI	CASTG	3 cut(s)	817, 1182, 1376
TseFI	GTSAC	2 cut(s)	246, 279
TseI	GCWGC	2 cut(s)	129, 1198
Tsp45I	GTSAC	2 cut(s)	246, 279
TspDTI	ATGAA	1 cut(s)	868
TspGWI	ACGGA	1 cut(s)	1485
TspRI	CASTG	3 cut(s)	817, 1182, 1376
Tth111I	GACNNNGTC	1 cut(s)	1371
VpaK11BI	GGWCC	5 cut(s)	953, 1000, 1250, 1312, 1386
XapI	RAATTY	2 cut(s)	488, 775
XspI	CTAG	1 cut(s)	617

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.