Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0004065

Physical Location & Seq

Genomic Coordinates Reverse (-)

1790476 .. 1791985

Gene Structure 1510 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1014300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 927 bp

ATGTTCGAAGGTTTCAACAATAAACTTCCACTCCGTGGCTTCCTTGACGAGTTACCAGACTTGGTGTTTTATCATGCAAACTCCAACAACTTCACAGGCTCAGTCCCGGTAAACCCTGCCATGCTTCGATACTTCTACGAGCTCGATCTCAGCAACAACAAGCTAACTGGAAGGTTTCCGTACGAAGTTTTAAGAGCAAAAAATTTGACATTTTTGGACCTCCGGTTCAACTTCTTTACCGGTCCTGTCCCAGCCCAAGTCTTCGACCTAGGAGTTGATGTGCTCTTCCTCAACAACAACAATTTCACTAAGCAGATCCCTGACAATCTTGGCTCCTCACCTGCCCATTACTTCACTTTTGCCAACAACAAATTCACCGGTCCGATCCCAAGAAGCATTGGCCAAGCATCCAAAACTCTTTATGAAGTTCTCTTCCTTGGGAACAAGCTTTCAGGGTGTCTGCCATACGAAATTGGGTACCTTAACCAGGCCACCGTGTTCGATGTAAGTTCCAACTACTTAACAGGCCCAATACCAGCCTCGTTTGCTTGCTTGGCCAAGATAGTGTATCTAAACTTAGCCAAGAACAAGTTCTACGGACCCGTGCCTGAGATGGTGTGCAAGTTGTCTACCCTGGGGAACTTGTCTTTGGCAGACAACTATTTCACTGTGGTCGGTCCAGAGTGCCAGAAATTGGTTAATAGAAAGATACTTGATGTTAGTAAGAACTGCATTTTGGGCCAACCAAATCAGAGAACAAAGATGGAATGTGCTACTTTCTTCTCCAAGCCTAGAAAGTGTCCCAACGAGAAGGAGATGACTTACATTCCTTGTAAAAGGCCGTATTCAGGTTCAAATGAGAAGAAGACCGATCATCTGCCACGAGCTCCACTATCATATGGTACTCTTATACCACATAGGCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2

Protein Analysis

309

Amino Acids

34.69

Weight (kDa)

9.14

Isoelectric Point (pI)

37.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004065)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49750 AT3G19320
fragaria_vesca	FvH4_2g05530
malus_domestica	MD00G1014300.v1.1 MD05G1086700.v1.1
prunus_persica	Prupe.8G131400_v2.0.a1 Prupe.8G131500_v2.0.a1
pyrus_communis	pycom05g08610 pycom10g08130
rosa_chinensis	RchiOBHm_Chr4g0387761 RchiOBHm_Chr6g0255781 RchiOBHm_Chr6g0255841
rosa_laevigata	RLG00000014812 RLG00000014813
rosa_multiflora	Rmu_sc0001163.1_g000027 Rmu_sc0001163.1_g000029 Rmu_sc0004935.1_g000023
rosa_roxburghii	Rroxscaffold_7G00209620 Rroxscaffold_7G00209650
rosa_rugosa	Rorug05G0561500 Rorug05G0561700
rosa_samantha	Rh1AG424200 Rh4BG013200 Rh6AG079500 Rh6AG079800 Rh6BG072600 Rh6BG072700 Rh6CG070700 Rh6CG070800 Rh6DG068000 Rh6DG068100
rosa_wichuraiana	Rw6G006850 Rw6G006880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	349
Acc36I	ACCTGC	1 cut(s)	349
Acc65I	GGTACC	1 cut(s)	477
AccB1I	GGYRCC	1 cut(s)	477
AccB7I	CCANNNNNTGG	2 cut(s)	35, 694
AccI	GTMKAC	1 cut(s)	629
AclWI	GGATC	2 cut(s)	310, 379
AcoI	YGGCCR	2 cut(s)	400, 555
AcsI	RAATTY	2 cut(s)	202, 371
AdeI	CACNNNGTG	1 cut(s)	35
AfaI	GTAC	3 cut(s)	182, 479, 904
AfiI	CCNNNNNNNGG	4 cut(s)	35, 487, 694, 848
AgeI	ACCGGT	2 cut(s)	239, 377
AgsI	TTSAA	3 cut(s)	16, 229, 855
AjnI	CCWGG	2 cut(s)	486, 633
AjuI	GAANNNNNNNTTGG	8 cut(s)	356, 388, 575, 607, 632, 664, 719, 751
AloI	GAACNNNNNNTCC	2 cut(s)	209, 241
AluBI	AGCT	4 cut(s)	142, 163, 448, 887
AluI	AGCT	4 cut(s)	142, 163, 448, 887
Alw21I	GWGCWC	3 cut(s)	144, 285, 889
AlwI	GGATC	2 cut(s)	310, 379
AoxI	GGCC	6 cut(s)	400, 489, 526, 555, 739, 839
ApoI	RAATTY	2 cut(s)	202, 371
AsiGI	ACCGGT	2 cut(s)	239, 377
Asp700I	GAANNNNTTC	1 cut(s)	590
Asp718I	GGTACC	1 cut(s)	477
AspA2I	CCTAGG	1 cut(s)	268
AspS9I	GGNCC	7 cut(s)	217, 242, 380, 527, 599, 677, 739
AsuC2I	CCSGG	1 cut(s)	107
AsuHPI	GGTGA	2 cut(s)	330, 367
AsuII	TTCGAA	1 cut(s)	6
AvaII	GGWCC	5 cut(s)	217, 242, 380, 599, 677
AvrII	CCTAGG	1 cut(s)	268
BalI	TGGCCA	2 cut(s)	402, 557
BanI	GGYRCC	1 cut(s)	477
BanII	GRGCYC	2 cut(s)	144, 889
BauI	CACGAG	1 cut(s)	882
BbsI	GAAGAC	2 cut(s)	253, 872
Bbv12I	GWGCWC	3 cut(s)	144, 285, 889
BccI	CCATC	2 cut(s)	607, 757
BceAI	ACGGC	1 cut(s)	826
BciT130I	CCWGG	2 cut(s)	488, 635
BcnI	CCSGG	1 cut(s)	107
BfaI	CTAG	2 cut(s)	269, 792
BfuAI	ACCTGC	1 cut(s)	349
BlnI	CCTAGG	1 cut(s)	268
Bme1390I	CCNGG	3 cut(s)	107, 488, 635
Bme18I	GGWCC	5 cut(s)	217, 242, 380, 599, 677
BmgT120I	GGNCC	7 cut(s)	217, 242, 380, 527, 599, 677, 739
BmiI	GGNNCC	3 cut(s)	334, 479, 601
BmrFI	CCNGG	3 cut(s)	107, 488, 635
BmsI	GCATC	1 cut(s)	416
BpiI	GAAGAC	2 cut(s)	253, 872
Bpu14I	TTCGAA	1 cut(s)	6
BpuMI	CCSGG	1 cut(s)	107
BsaJI	CCNNGG	5 cut(s)	34, 268, 436, 633, 634
BsaWI	WCCGGW	3 cut(s)	222, 239, 377
BsaXI	ACNNNNNCTCC	4 cut(s)	15, 45, 264, 294
Bsc4I	CCNNNNNNNGG	4 cut(s)	35, 487, 694, 848
Bse118I	RCCGGY	2 cut(s)	239, 377
Bse1I	ACTGG	1 cut(s)	172
BseBI	CCWGG	2 cut(s)	488, 635
BseDI	CCNNGG	5 cut(s)	34, 268, 436, 633, 634
BseGI	GGATG	1 cut(s)	407
BseLI	CCNNNNNNNGG	4 cut(s)	35, 487, 694, 848
BseMII	CTCAG	3 cut(s)	114, 163, 600
BseNI	ACTGG	1 cut(s)	172
BseRI	GAGGAG	1 cut(s)	325
BseYI	CCCAGC	1 cut(s)	250
BshFI	GGCC	6 cut(s)	402, 491, 528, 557, 741, 841
BshNI	GGYRCC	1 cut(s)	477
BshTI	ACCGGT	2 cut(s)	239, 377
BsiHKAI	GWGCWC	3 cut(s)	144, 285, 889
BsiSI	CCGG	4 cut(s)	107, 223, 240, 378
BsiWI	CGTACG	1 cut(s)	180
BslFI	GGGAC	3 cut(s)	89, 233, 786
BslI	CCNNNNNNNGG	4 cut(s)	35, 487, 694, 848
BsmFI	GGGAC	3 cut(s)	89, 233, 786
BsnI	GGCC	6 cut(s)	402, 491, 528, 557, 741, 841
Bsp119I	TTCGAA	1 cut(s)	6
Bsp1286I	GDGCHC	3 cut(s)	144, 285, 889
Bsp143I	GATC	4 cut(s)	145, 315, 384, 871
BspANI	GGCC	6 cut(s)	402, 491, 528, 557, 741, 841
BspCNI	CTCAG	3 cut(s)	113, 162, 601
BspLI	GGNNCC	3 cut(s)	334, 479, 601
BspMI	ACCTGC	1 cut(s)	349
BspPI	GGATC	2 cut(s)	310, 379
BspQI	GCTCTTC	1 cut(s)	290
BspT104I	TTCGAA	1 cut(s)	6
BspT107I	GGYRCC	1 cut(s)	477
BsrFI	RCCGGY	2 cut(s)	239, 377
BsrI	ACTGG	1 cut(s)	172
BssAI	RCCGGY	2 cut(s)	239, 377
BssECI	CCNNGG	5 cut(s)	34, 268, 436, 633, 634
BssMI	GATC	4 cut(s)	145, 315, 384, 871
BssSI	CACGAG	1 cut(s)	882
BssT1I	CCWWGG	2 cut(s)	268, 436
Bst2BI	CACGAG	1 cut(s)	882
Bst2UI	CCWGG	2 cut(s)	488, 635
Bst4CI	ACNGT	2 cut(s)	496, 670
Bst6I	CTCTTC	2 cut(s)	290, 437
BstBI	TTCGAA	1 cut(s)	6
BstC8I	GCNNGC	1 cut(s)	550
BstDEI	CTNAG	5 cut(s)	100, 149, 309, 577, 609
BstDSI	CCRYGG	1 cut(s)	34
BstENI	CCTNNNNNAGG	1 cut(s)	485
BstF5I	GGATG	1 cut(s)	407
BstKTI	GATC	4 cut(s)	148, 318, 387, 874
BstMBI	GATC	4 cut(s)	145, 315, 384, 871
BstMWI	GCNNNNNNNGC	3 cut(s)	545, 554, 738
BstNI	CCWGG	2 cut(s)	488, 635
BstSCI	CCNGG	3 cut(s)	105, 486, 633
BstV2I	GAAGAC	2 cut(s)	253, 872
BstX2I	RGATCY	1 cut(s)	315
BstYI	RGATCY	1 cut(s)	315
BsuRI	GGCC	6 cut(s)	402, 491, 528, 557, 741, 841
BtgI	CCRYGG	1 cut(s)	34
BtsCI	GGATG	1 cut(s)	407
BtsIMutI	CAGTG	1 cut(s)	666
BveI	ACCTGC	1 cut(s)	349
Cac8I	GCNNGC	1 cut(s)	550
Cfr10I	RCCGGY	2 cut(s)	239, 377
Cfr13I	GGNCC	7 cut(s)	217, 242, 380, 527, 599, 677, 739
CpoI	CGGWCCG	1 cut(s)	380
Csp6I	GTAC	3 cut(s)	181, 478, 903
CspAI	ACCGGT	2 cut(s)	239, 377
CspI	CGGWCCG	1 cut(s)	380
CviAII	CATG	2 cut(s)	74, 121
CviQI	GTAC	3 cut(s)	181, 478, 903
DdeI	CTNAG	5 cut(s)	100, 149, 309, 577, 609
DpnI	GATC	4 cut(s)	147, 317, 386, 873
DpnII	GATC	4 cut(s)	145, 315, 384, 871
DraIII	CACNNNGTG	1 cut(s)	35
EaeI	YGGCCR	2 cut(s)	400, 555
Eam1104I	CTCTTC	2 cut(s)	290, 437
EarI	CTCTTC	2 cut(s)	290, 437
Ecl136II	GAGCTC	2 cut(s)	142, 887
Eco130I	CCWWGG	2 cut(s)	268, 436
Eco24I	GRGCYC	2 cut(s)	144, 889
Eco47I	GGWCC	5 cut(s)	217, 242, 380, 599, 677
Eco53kI	GAGCTC	2 cut(s)	142, 887
EcoICRI	GAGCTC	2 cut(s)	142, 887
EcoNI	CCTNNNNNAGG	1 cut(s)	485
EcoRII	CCWGG	2 cut(s)	486, 633
EcoT14I	CCWWGG	2 cut(s)	268, 436
EcoT38I	GRGCYC	2 cut(s)	144, 889
ErhI	CCWWGG	2 cut(s)	268, 436
FaeI	CATG	2 cut(s)	77, 124
FaiI	YATR	8 cut(s)	75, 122, 423, 466, 898, 900, 911, 918
FaqI	GGGAC	3 cut(s)	89, 233, 786
FatI	CATG	2 cut(s)	73, 120
FauNDI	CATATG	1 cut(s)	898
FblI	GTMKAC	1 cut(s)	629
FokI	GGATG	1 cut(s)	394
FriOI	GRGCYC	2 cut(s)	144, 889
FspBI	CTAG	2 cut(s)	269, 792
GsaI	CCCAGC	1 cut(s)	254
HaeIII	GGCC	6 cut(s)	402, 491, 528, 557, 741, 841
HapII	CCGG	4 cut(s)	107, 223, 240, 378
Hin1II	CATG	2 cut(s)	77, 124
HindIII	AAGCTT	1 cut(s)	446
HpaII	CCGG	4 cut(s)	107, 223, 240, 378
HphI	GGTGA	2 cut(s)	330, 367
Hpy166II	GTNNAC	2 cut(s)	112, 630
Hpy188I	TCNGA	2 cut(s)	384, 753
Hpy188III	TCNNGA	1 cut(s)	680
Hpy8I	GTNNAC	2 cut(s)	112, 630
HpyAV	CCTTC	2 cut(s)	165, 805
HpyCH4III	ACNGT	2 cut(s)	496, 670
HpyCH4V	TGCA	3 cut(s)	77, 621, 732
HpyF10VI	GCNNNNNNNGC	3 cut(s)	545, 554, 738
HpyF3I	CTNAG	5 cut(s)	100, 149, 309, 577, 609
Hsp92II	CATG	2 cut(s)	77, 124
KpnI	GGTACC	1 cut(s)	481
Kzo9I	GATC	4 cut(s)	145, 315, 384, 871
LguI	GCTCTTC	1 cut(s)	290
LmnI	GCTCC	2 cut(s)	338, 892
LweI	GCATC	1 cut(s)	416
MaeI	CTAG	2 cut(s)	269, 792
MaeIII	GTNAC	1 cut(s)	51
MalI	GATC	4 cut(s)	147, 317, 386, 873
MboI	GATC	4 cut(s)	145, 315, 384, 871
MboII	GAAGA	6 cut(s)	253, 277, 424, 772, 874, 877
MflI	RGATCY	1 cut(s)	315
MhlI	GDGCHC	3 cut(s)	144, 285, 889
MlsI	TGGCCA	2 cut(s)	402, 557
MluCI	AATT	5 cut(s)	202, 301, 371, 471, 692
MluNI	TGGCCA	2 cut(s)	402, 557
MmeI	TCCRAC	2 cut(s)	108, 537
MnlI	CCTC	4 cut(s)	230, 299, 346, 550
Mox20I	TGGCCA	2 cut(s)	402, 557
MroXI	GAANNNNTTC	1 cut(s)	590
MscI	TGGCCA	2 cut(s)	402, 557
MseI	TTAA	4 cut(s)	191, 483, 521, 699
Msp20I	TGGCCA	2 cut(s)	402, 557
MspI	CCGG	4 cut(s)	107, 223, 240, 378
MspR9I	CCNGG	3 cut(s)	107, 488, 635
MvaI	CCWGG	2 cut(s)	488, 635
MwoI	GCNNNNNNNGC	3 cut(s)	545, 554, 738
NciI	CCSGG	1 cut(s)	107
NdeI	CATATG	1 cut(s)	898
NdeII	GATC	4 cut(s)	145, 315, 384, 871
NlaIII	CATG	2 cut(s)	77, 124
NlaIV	GGNNCC	3 cut(s)	334, 479, 601
NspV	TTCGAA	1 cut(s)	6
PaqCI	CACCTGC	1 cut(s)	349
PasI	CCCWGGG	1 cut(s)	634
PciSI	GCTCTTC	1 cut(s)	290
PdmI	GAANNNNTTC	1 cut(s)	590
Pfl23II	CGTACG	1 cut(s)	180
PflMI	CCANNNNNTGG	2 cut(s)	35, 694
PinAI	ACCGGT	2 cut(s)	239, 377
Psp124BI	GAGCTC	2 cut(s)	144, 889
Psp6I	CCWGG	2 cut(s)	486, 633
PspFI	CCCAGC	1 cut(s)	250
PspGI	CCWGG	2 cut(s)	486, 633
PspLI	CGTACG	1 cut(s)	180
PspN4I	GGNNCC	3 cut(s)	334, 479, 601
PspPI	GGNCC	7 cut(s)	217, 242, 380, 527, 599, 677, 739
PsrI	GAACNNNNNNTAC	2 cut(s)	578, 610
PsuI	RGATCY	1 cut(s)	315
RsaI	GTAC	3 cut(s)	182, 479, 904
RsaNI	GTAC	3 cut(s)	181, 478, 903
Rsr2I	CGGWCCG	1 cut(s)	380
RsrII	CGGWCCG	1 cut(s)	380
SacI	GAGCTC	2 cut(s)	144, 889
SapI	GCTCTTC	1 cut(s)	290
SaqAI	TTAA	4 cut(s)	191, 483, 521, 699
Sau3AI	GATC	4 cut(s)	145, 315, 384, 871
Sau96I	GGNCC	7 cut(s)	217, 242, 380, 527, 599, 677, 739
ScrFI	CCNGG	3 cut(s)	107, 488, 635
SduI	GDGCHC	3 cut(s)	144, 285, 889
SfaNI	GCATC	1 cut(s)	416
SfuI	TTCGAA	1 cut(s)	6
SinI	GGWCC	5 cut(s)	217, 242, 380, 599, 677
Sse9I	AATT	5 cut(s)	202, 301, 371, 471, 692
SspMI	CTAG	2 cut(s)	269, 792
SstI	GAGCTC	2 cut(s)	144, 889
StyD4I	CCNGG	3 cut(s)	105, 486, 633
StyI	CCWWGG	2 cut(s)	268, 436
TaaI	ACNGT	2 cut(s)	496, 670
TaqI	TCGA	5 cut(s)	6, 127, 144, 264, 501
TaqII	GACCGA	2 cut(s)	665, 884
TasI	AATT	5 cut(s)	202, 301, 371, 471, 692
Tru1I	TTAA	4 cut(s)	191, 483, 521, 699
Tru9I	TTAA	4 cut(s)	191, 483, 521, 699
TscAI	CASTG	1 cut(s)	673
TspDTI	ATGAA	1 cut(s)	438
TspGWI	ACGGA	3 cut(s)	23, 168, 612
TspRI	CASTG	1 cut(s)	673
Van91I	CCANNNNNTGG	2 cut(s)	35, 694
VpaK11BI	GGWCC	5 cut(s)	217, 242, 380, 599, 677
XagI	CCTNNNNNAGG	1 cut(s)	485
XapI	RAATTY	2 cut(s)	202, 371
XmaJI	CCTAGG	1 cut(s)	268
XmiI	GTMKAC	1 cut(s)	629
XmnI	GAANNNNTTC	1 cut(s)	590
XspI	CTAG	2 cut(s)	269, 792

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.