Prupe.8G176300_v2.0.a1

NmrA-like family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0015401
Physical Location & Seq
Reverse (-)
17843581 .. 17847678
4098 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G176300.1

Sequence Viewer

Length: 1218 bp
ATGGCAGCAATGGCTTGGAGGCTTCCTACCCAGCTGGCAACACCCGGTAAACTCCATCATCATAATGACTCCAAAACGACGGCATATCAGAGCTCATTCTCATGGTGCCGTACGTTAGCTGCCGACCATCTCCTTCCTTCTTCATCATCATCTTCTTCTTCTTCCCGCTCCACCATTATAGGAACTAATACGCGGCGTTTAGTGAGATGTACGGCCAGGGCAGGGGTTGGGGCTGTGAATCTTGCTCCAGGGACTCCTGTGAGGCCAACCAGTATTCTAGTGGTTGGTGCCACTGGGACTTTGGGTAGGCAGATTGTGAGAAGAGCATTAGATGAAGGCTATGATGTTAGGTGCCTGGTTAGGCCTAGACCAGCCCCTGCTGACTTCCTCAGAGATTGGGGTGCTACTGTTGTCAATGCAGACCTTAGCAAACCAGAGACCATACCTGCAACTTTGGTTGGTATTCATACTGTCATTGATTGTGCCACTGGCCGTCCGGAGGAGCCCATCAAAACGGTAGATTGGGAAGGAAAAGTTGCTCTTATACAATGTGCAAAAGCAATGGGAATCCAAAAATTTGTATTCTATTCTATCCACAACTGTGACAAGCATCCCGAAGTTCCCCTTATGGAGATCAAGTATTGCACTGAAAAGTTTCTCCAGGATTCAGGCCTAAATCACGTTATAATTCGTTTATGTGGATTCATGCAAGGGATTATTGGGCAGTATGCGGTACCTATATTGGAAGAGAAATCAGTTTGGGGAACAGATGCCCCCACAAGAATTGCGTACATGGACACTCAGGATGTAGCTCGCCTGACCTTTGTAGCTTTAAGAAATGAGAAAGTCAATGGGAAGCTTCTCACATTTGCTGGCCCTCGAGCATGGACAACCCAAGAGGTAATAACATTGTGTGAAAGGTTTGCGGGGCAAGAGGCAAATGTAACTACAGTCCCAGTCTCTGTCTTGAGAGTAACCCGTCAGCTGACTAGGCTTTTTGAGTGGACAAATGATGTTGCTGATAGATTGGCATTTTCAGAGGTTCTTTCAAGTGATACTGTTTTCTCTGTTCCAATGAACGAGACATTTAGTCTTCTTGGTGTTGACGGAAAAGACATAGTCACACTCGAGAAATATCTGCAGGACTACTTCACCAACATTTTGAAGAAGTTGAAAGATCTCAAAGCACAATCTAAGCAATCTGACATTTACTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NmrA

Protein Analysis

406

Amino Acids

44.79

Weight (kDa)

8.78

Isoelectric Point (pI)

40.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015401)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G35250
fragaria_vesca FvH4_2g16360 FvH4_2g16360 FvH4_2g16360
malus_domestica MD05G1131800.v1.1
prunus_persica Prupe.8G176300_v2.0.a1
pyrus_communis pycom05g12860
rosa_chinensis RchiOBHm_Chr6g0280111
rosa_laevigata RLG00000013088
rosa_multiflora Rmu_sc0007137.1_g000006
rosa_roxburghii Rroxscaffold_7G00188370 Rroxscaffold_7G00189360
rosa_rugosa Rorug06G0130000
rosa_samantha Rh6AG240300 Rh6BG244100
rosa_wichuraiana Rw6G020940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 686
Acc36I ACCTGC 1 cut(s) 454
Acc65I GGTACC 1 cut(s) 733
AccB1I GGYRCC 4 cut(s) 105, 287, 351, 733
AccBSI CCGCTC 1 cut(s) 168
AccII CGCG 1 cut(s) 193
AccIII TCCGGA 1 cut(s) 496
AciI CCGC 4 cut(s) 166, 193, 731, 926
AcoI YGGCCR 2 cut(s) 213, 490
AcsI RAATTY 1 cut(s) 575
AfaI GTAC 4 cut(s) 112, 211, 735, 791
AfiI CCNNNNNNNGG 2 cut(s) 222, 499
AgsI TTSAA 3 cut(s) 1050, 1165, 1174
AhdI GACNNNNNGTC 1 cut(s) 1089
AjnI CCWGG 4 cut(s) 215, 247, 354, 660
AleI CACNNNNGTG 1 cut(s) 600
AluBI AGCT 7 cut(s) 34, 93, 119, 812, 830, 859, 985
AluI AGCT 7 cut(s) 34, 93, 119, 812, 830, 859, 985
Alw21I GWGCWC 1 cut(s) 95
Alw26I GTCTC 3 cut(s) 431, 964, 1076
AlwNI CAGNNNCTG 2 cut(s) 377, 962
Ama87I CYCGRG 2 cut(s) 879, 1127
Aor13HI TCCGGA 1 cut(s) 496
AoxI GGCC 6 cut(s) 213, 263, 362, 490, 670, 874
ApeKI GCWGC 2 cut(s) 5, 119
ApoI RAATTY 1 cut(s) 575
Asp700I GAANNNNTTC 1 cut(s) 654
Asp718I GGTACC 1 cut(s) 733
AspS9I GGNCC 1 cut(s) 875
AsuC2I CCSGG 1 cut(s) 45
AsuHPI GGTGA 1 cut(s) 1144
AvaI CYCGRG 2 cut(s) 879, 1127
BanI GGYRCC 4 cut(s) 105, 287, 351, 733
BanII GRGCYC 2 cut(s) 95, 507
BbsI GAAGAC 1 cut(s) 1085
Bbv12I GWGCWC 1 cut(s) 95
BbvI GCAGC 2 cut(s) 17, 106
BccI CCATC 3 cut(s) 63, 135, 515
BceAI ACGGC 4 cut(s) 93, 96, 228, 477
BciT130I CCWGG 4 cut(s) 217, 249, 356, 662
BcnI CCSGG 1 cut(s) 45
BcoDI GTCTC 3 cut(s) 431, 964, 1076
BfaI CTAG 3 cut(s) 278, 366, 990
BfmI CTRYAG 2 cut(s) 948, 1139
BfuAI ACCTGC 1 cut(s) 454
BglII AGATCT 1 cut(s) 1177
BisI GCNGC 3 cut(s) 6, 120, 194
BlsI GCNGC 3 cut(s) 7, 121, 195
Bme1390I CCNGG 5 cut(s) 45, 217, 249, 356, 662
BmeRI GACNNNNNGTC 1 cut(s) 1089
BmeT110I CYCGRG 2 cut(s) 879, 1127
BmgT120I GGNCC 1 cut(s) 875
BmiI GGNNCC 5 cut(s) 107, 289, 353, 504, 735
BmrFI CCNGG 5 cut(s) 45, 217, 249, 356, 662
BmrI ACTGGG 2 cut(s) 303, 950
BmsI GCATC 2 cut(s) 619, 760
BmuI ACTGGG 2 cut(s) 303, 950
BpiI GAAGAC 1 cut(s) 1085
BpmI CTGGAG 2 cut(s) 231, 644
Bpu10I CCTNAGC 1 cut(s) 425
BpuEI CTTGAG 1 cut(s) 988
BpuMI CCSGG 1 cut(s) 45
BsaI GGTCTC 1 cut(s) 431
BsaJI CCNNGG 2 cut(s) 216, 248
BsaWI WCCGGW 1 cut(s) 496
BsaXI ACNNNNNCTCC 2 cut(s) 623, 653
Bsc4I CCNNNNNNNGG 2 cut(s) 222, 499
Bse1I ACTGG 4 cut(s) 270, 298, 493, 956
Bse3DI GCAATG 2 cut(s) 15, 567
BseAI TCCGGA 1 cut(s) 496
BseBI CCWGG 4 cut(s) 217, 249, 356, 662
BseDI CCNNGG 2 cut(s) 216, 248
BseGI GGATG 2 cut(s) 610, 811
BseLI CCNNNNNNNGG 2 cut(s) 222, 499
BseMI GCAATG 2 cut(s) 15, 567
BseMII CTCAG 2 cut(s) 403, 815
BseNI ACTGG 4 cut(s) 270, 298, 493, 956
BseRI GAGGAG 1 cut(s) 515
BseXI GCAGC 2 cut(s) 17, 106
BseYI CCCAGC 1 cut(s) 30
Bsh1236I CGCG 1 cut(s) 193
BshFI GGCC 6 cut(s) 215, 265, 364, 492, 672, 876
BshNI GGYRCC 4 cut(s) 105, 287, 351, 733
BsiHKAI GWGCWC 1 cut(s) 95
BsiHKCI CYCGRG 2 cut(s) 879, 1127
BsiSI CCGG 2 cut(s) 45, 497
BsiWI CGTACG 1 cut(s) 110
BslFI GGGAC 3 cut(s) 265, 310, 938
BslI CCNNNNNNNGG 2 cut(s) 222, 499
BsmAI GTCTC 3 cut(s) 431, 964, 1076
BsmFI GGGAC 3 cut(s) 265, 310, 938
BsnI GGCC 6 cut(s) 215, 265, 364, 492, 672, 876
Bso31I GGTCTC 1 cut(s) 431
BsoBI CYCGRG 2 cut(s) 879, 1127
Bsp1286I GDGCHC 2 cut(s) 95, 507
Bsp13I TCCGGA 1 cut(s) 496
Bsp143I GATC 2 cut(s) 633, 1177
BspACI CCGC 4 cut(s) 166, 193, 731, 926
BspANI GGCC 6 cut(s) 215, 265, 364, 492, 672, 876
BspCNI CTCAG 2 cut(s) 402, 814
BspEI TCCGGA 1 cut(s) 496
BspFNI CGCG 1 cut(s) 193
BspLI GGNNCC 5 cut(s) 107, 289, 353, 504, 735
BspMAI CTGCAG 1 cut(s) 1143
BspMI ACCTGC 1 cut(s) 454
BspQI GCTCTTC 1 cut(s) 316
BspT107I GGYRCC 4 cut(s) 105, 287, 351, 733
BspTNI GGTCTC 1 cut(s) 431
BsrBI CCGCTC 1 cut(s) 168
BsrDI GCAATG 2 cut(s) 15, 567
BsrI ACTGG 4 cut(s) 270, 298, 493, 956
BssECI CCNNGG 2 cut(s) 216, 248
BssMI GATC 2 cut(s) 633, 1177
Bst2UI CCWGG 4 cut(s) 217, 249, 356, 662
Bst4CI ACNGT 6 cut(s) 409, 472, 517, 602, 952, 1060
Bst6I CTCTTC 2 cut(s) 316, 741
BstC8I GCNNGC 3 cut(s) 36, 814, 874
BstDEI CTNAG 4 cut(s) 389, 425, 801, 1194
BstF5I GGATG 2 cut(s) 610, 811
BstFNI CGCG 1 cut(s) 193
BstKTI GATC 2 cut(s) 636, 1180
BstMAI GTCTC 3 cut(s) 431, 964, 1076
BstMBI GATC 2 cut(s) 633, 1177
BstMWI GCNNNNNNNGC 2 cut(s) 11, 991
BstNI CCWGG 4 cut(s) 217, 249, 356, 662
BstSCI CCNGG 5 cut(s) 43, 215, 247, 354, 660
BstSFI CTRYAG 2 cut(s) 948, 1139
BstUI CGCG 1 cut(s) 193
BstV1I GCAGC 2 cut(s) 17, 106
BstV2I GAAGAC 1 cut(s) 1085
BstX2I RGATCY 1 cut(s) 1177
BstYI RGATCY 1 cut(s) 1177
BsuRI GGCC 6 cut(s) 215, 265, 364, 492, 672, 876
BtsCI GGATG 2 cut(s) 610, 811
BtsIMutI CAGTG 3 cut(s) 291, 486, 645
BveI ACCTGC 1 cut(s) 454
Cac8I GCNNGC 3 cut(s) 36, 814, 874
CaiI CAGNNNCTG 2 cut(s) 377, 962
Cfr13I GGNCC 1 cut(s) 875
Csp6I GTAC 4 cut(s) 111, 210, 734, 790
CspCI CAANNNNNGTGG 2 cut(s) 766, 801
CviAII CATG 4 cut(s) 102, 706, 793, 885
CviQI GTAC 4 cut(s) 111, 210, 734, 790
DdeI CTNAG 4 cut(s) 389, 425, 801, 1194
DpnI GATC 2 cut(s) 635, 1179
DpnII GATC 2 cut(s) 633, 1177
DriI GACNNNNNGTC 1 cut(s) 1089
EaeI YGGCCR 2 cut(s) 213, 490
Eam1104I CTCTTC 2 cut(s) 316, 741
Eam1105I GACNNNNNGTC 1 cut(s) 1089
EarI CTCTTC 2 cut(s) 316, 741
Ecl136II GAGCTC 1 cut(s) 93
Eco147I AGGCCT 2 cut(s) 364, 672
Eco24I GRGCYC 2 cut(s) 95, 507
Eco31I GGTCTC 1 cut(s) 431
Eco53kI GAGCTC 1 cut(s) 93
Eco88I CYCGRG 2 cut(s) 879, 1127
EcoICRI GAGCTC 1 cut(s) 93
EcoRII CCWGG 4 cut(s) 215, 247, 354, 660
EcoT38I GRGCYC 2 cut(s) 95, 507
FaeI CATG 4 cut(s) 105, 709, 796, 888
FalI AAGNNNNNCTT 4 cut(s) 525, 557, 609, 641
FaqI GGGAC 3 cut(s) 265, 310, 938
FatI CATG 4 cut(s) 101, 705, 792, 884
FauI CCCGC 2 cut(s) 173, 919
Fnu4HI GCNGC 3 cut(s) 6, 120, 194
FokI GGATG 2 cut(s) 597, 818
FriOI GRGCYC 2 cut(s) 95, 507
Fsp4HI GCNGC 3 cut(s) 6, 120, 194
FspBI CTAG 3 cut(s) 278, 366, 990
GluI GCNGC 3 cut(s) 6, 120, 194
GsaI CCCAGC 1 cut(s) 34
GsuI CTGGAG 2 cut(s) 231, 644
HaeIII GGCC 6 cut(s) 215, 265, 364, 492, 672, 876
HapII CCGG 2 cut(s) 45, 497
Hin1II CATG 4 cut(s) 105, 709, 796, 888
HincII GTYRAC 1 cut(s) 1105
HindII GTYRAC 1 cut(s) 1105
HindIII AAGCTT 1 cut(s) 857
HinfI GANTC 6 cut(s) 68, 238, 253, 567, 665, 702
HpaII CCGG 2 cut(s) 45, 497
HphI GGTGA 1 cut(s) 1144
Hpy166II GTNNAC 3 cut(s) 50, 1005, 1105
Hpy188I TCNGA 4 cut(s) 90, 392, 1039, 1204
Hpy188III TCNNGA 5 cut(s) 497, 614, 803, 967, 1129
Hpy8I GTNNAC 3 cut(s) 50, 1005, 1105
Hpy99I CGWCG 1 cut(s) 82
HpyAV CCTTC 4 cut(s) 143, 147, 329, 521
HpyCH4III ACNGT 6 cut(s) 409, 472, 517, 602, 952, 1060
HpyCH4IV ACGT 2 cut(s) 113, 681
HpyCH4V TGCA 6 cut(s) 419, 449, 554, 645, 709, 1141
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 991
HpyF3I CTNAG 4 cut(s) 389, 425, 801, 1194
HpySE526I ACGT 2 cut(s) 113, 681
Hsp92II CATG 4 cut(s) 105, 709, 796, 888
Kpn2I TCCGGA 1 cut(s) 496
KpnI GGTACC 1 cut(s) 737
Kzo9I GATC 2 cut(s) 633, 1177
LguI GCTCTTC 1 cut(s) 316
LmnI GCTCC 3 cut(s) 173, 250, 502
Lsp1109I GCAGC 2 cut(s) 17, 106
LweI GCATC 2 cut(s) 619, 760
MaeI CTAG 3 cut(s) 278, 366, 990
MaeII ACGT 2 cut(s) 113, 681
MaeIII GTNAC 4 cut(s) 602, 943, 973, 1120
MalI GATC 2 cut(s) 635, 1179
MbiI CCGCTC 1 cut(s) 168
MboI GATC 2 cut(s) 633, 1177
MboII GAAGA 9 cut(s) 132, 144, 147, 150, 153, 333, 758, 1085, 1177
MflI RGATCY 1 cut(s) 1177
MhlI GDGCHC 2 cut(s) 95, 507
MluCI AATT 3 cut(s) 575, 687, 783
MlyI GAGTC 2 cut(s) 62, 247
MnlI CCTC 8 cut(s) 12, 255, 398, 493, 888, 892, 928, 1033
MroI TCCGGA 1 cut(s) 496
MroXI GAANNNNTTC 1 cut(s) 654
MseI TTAA 1 cut(s) 833
MslI CAYNNNNRTG 3 cut(s) 63, 100, 600
MspA1I CMGCKG 2 cut(s) 34, 985
MspI CCGG 2 cut(s) 45, 497
MspR9I CCNGG 5 cut(s) 45, 217, 249, 356, 662
MvaI CCWGG 4 cut(s) 217, 249, 356, 662
MvnI CGCG 1 cut(s) 193
MwoI GCNNNNNNNGC 2 cut(s) 11, 991
NciI CCSGG 1 cut(s) 45
NdeII GATC 2 cut(s) 633, 1177
NlaIII CATG 4 cut(s) 105, 709, 796, 888
NlaIV GGNNCC 5 cut(s) 107, 289, 353, 504, 735
NmuCI GTSAC 2 cut(s) 602, 1120
OliI CACNNNNGTG 1 cut(s) 600
PaeR7I CTCGAG 2 cut(s) 879, 1127
PceI AGGCCT 2 cut(s) 364, 672
PciSI GCTCTTC 1 cut(s) 316
PdmI GAANNNNTTC 1 cut(s) 654
PfeI GAWTC 4 cut(s) 238, 567, 665, 702
Pfl23II CGTACG 1 cut(s) 110
PflFI GACNNNGTC 1 cut(s) 1118
PfoI TCCNGGA 1 cut(s) 660
PkrI GCNGC 3 cut(s) 7, 121, 195
PleI GAGTC 2 cut(s) 62, 247
PpsI GAGTC 2 cut(s) 62, 247
PsiI TTATAA 1 cut(s) 686
Psp124BI GAGCTC 1 cut(s) 95
Psp6I CCWGG 4 cut(s) 215, 247, 354, 660
PspFI CCCAGC 1 cut(s) 30
PspGI CCWGG 4 cut(s) 215, 247, 354, 660
PspLI CGTACG 1 cut(s) 110
PspN4I GGNNCC 5 cut(s) 107, 289, 353, 504, 735
PspPI GGNCC 1 cut(s) 875
PspXI VCTCGAGB 1 cut(s) 879
PstI CTGCAG 1 cut(s) 1143
PstNI CAGNNNCTG 2 cut(s) 377, 962
PsuI RGATCY 1 cut(s) 1177
PsyI GACNNNGTC 1 cut(s) 1118
PvuII CAGCTG 2 cut(s) 34, 985
RsaI GTAC 4 cut(s) 112, 211, 735, 791
RsaNI GTAC 4 cut(s) 111, 210, 734, 790
RseI CAYNNNNRTG 3 cut(s) 63, 100, 600
SacI GAGCTC 1 cut(s) 95
SapI GCTCTTC 1 cut(s) 316
SaqAI TTAA 1 cut(s) 833
SatI GCNGC 3 cut(s) 6, 120, 194
Sau3AI GATC 2 cut(s) 633, 1177
Sau96I GGNCC 1 cut(s) 875
SchI GAGTC 2 cut(s) 62, 247
ScrFI CCNGG 5 cut(s) 45, 217, 249, 356, 662
SduI GDGCHC 2 cut(s) 95, 507
SfaNI GCATC 2 cut(s) 619, 760
SfcI CTRYAG 2 cut(s) 948, 1139
Sfr274I CTCGAG 2 cut(s) 879, 1127
SlaI CTCGAG 2 cut(s) 879, 1127
SmiMI CAYNNNNRTG 3 cut(s) 63, 100, 600
SmlI CTYRAG 3 cut(s) 879, 967, 1127
SmoI CTYRAG 3 cut(s) 879, 967, 1127
Sse9I AATT 3 cut(s) 575, 687, 783
SseBI AGGCCT 2 cut(s) 364, 672
SsiI CCGC 4 cut(s) 166, 193, 731, 926
SspMI CTAG 3 cut(s) 278, 366, 990
SstI GAGCTC 1 cut(s) 95
StuI AGGCCT 2 cut(s) 364, 672
StyD4I CCNGG 5 cut(s) 43, 215, 247, 354, 660
TaaI ACNGT 6 cut(s) 409, 472, 517, 602, 952, 1060
TaiI ACGT 2 cut(s) 116, 684
TaqI TCGA 2 cut(s) 880, 1128
TasI AATT 3 cut(s) 575, 687, 783
TauI GCSGC 1 cut(s) 196
TfiI GAWTC 4 cut(s) 238, 567, 665, 702
Tru1I TTAA 1 cut(s) 833
Tru9I TTAA 1 cut(s) 833
TscAI CASTG 3 cut(s) 298, 493, 652
TseFI GTSAC 2 cut(s) 602, 1120
TseI GCWGC 2 cut(s) 5, 119
Tsp45I GTSAC 2 cut(s) 602, 1120
TspDTI ATGAA 5 cut(s) 132, 348, 455, 694, 1091
TspGWI ACGGA 1 cut(s) 1122
TspRI CASTG 3 cut(s) 298, 493, 652
Tth111I GACNNNGTC 1 cut(s) 1118
XapI RAATTY 1 cut(s) 575
XcmI CCANNNNNNNNNTGG 2 cut(s) 277, 298
XhoI CTCGAG 2 cut(s) 879, 1127
XmnI GAANNNNTTC 1 cut(s) 654
XspI CTAG 3 cut(s) 278, 366, 990
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.