Rroxscaffold_7G00189360

NmrA-like family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0015401
Physical Location & Seq
Reverse (-)
29103887 .. 29112703
8817 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00189360.1

Sequence Viewer

Length: 1251 bp
ATGGCTTGGAGGCTTCCAACCCAGCTGGCGACCAAAACGCACCATCACCACGACCACCCCAAACTCTCATGGTGCCGCACTTTATCACCAGACCATTTCCAACTCACTTCTTCTGCTTCCTCAATCTCTACCGCCGCAGGGAGCTGTAGTCGGGGTTTGGTGAGGTGTACGGCCCGGGCTGGAGTTGGGGCTGTGAATTTGGCTCCGGGGACACCTGCCCAGACCGGCTCCGGCGCGGCGGACTTTCTCAGAGATTGGGGTGCTACTGTTGTCAATGCAGACCTTAGCAAACCAGAGACCATACCTGCAACATTGGTTGGTGTTCATACACTTATTGATAGTGCCACTGGCTGTCCAGAGGAGCCTATCAAAAAGGTAGATTGGGAAGGGAAAGTTGCTCTAATACAATGTGCAAAGGCAATGGGAATCCAAAAATTTGTGTTCTTTTCAATCCACAACTGTGACAAGCATCCTGAAGTTCCTCTTATGGAGATCAAGTATTGCACTGAAAAGTTTCTTAAGGATTCAGGCATAAATCACATCATAATTCGTGCATGTGGATTCATGCAAGGGATTATTGGGCAGTATGCAGTACCTATTTTGGAAGAGAAATCAGTTTGGGGAACAGATGCCCCTACAAGAATTGCATACACGGACACCCAGGATATAGCTAGGTTGACATTTATAGCTTTACGAAATGAGAATGTTAATGGGAAGCTTCTCACATTTGCTGGCCCTCGTGCATGGACAACCCAAGAGGTAATAACATTGTGTGAAAGGTTTGCGGGGCAAGAGGCAAACATTACCACAGTTCCTATCTCTGTCTTAAGAGTAACCCGTCAGCTGACTAGGCATTTTGAGTGGACAAATGATGTTGCTGATAGATTGGCATTTTCAGAGGTGTTGGCTGCAAGTGAGGCCGTGTTGGTATGGCTTGCTCTGCGTGTTTGCTTTGGAGAAGGACACATCTTCATTCTTTTGGTATGGGTTGTTCGCTCGACACAGAGAGAGAAAAAGAGAGACAGAAAAGTTATCCAGGGGCTAGGTAATGTGAAAGCTAATGCAGCGGATTATGAGAGTGCTGAAGCTGATCAACGGAACCTGCTATATAAAGCTAATGAATTAAATCAACAAAATGTGCAATCTAAAGCTGCAGTAGTTAAACACAAACAACAGGGTGGACTGGAGAAACTTGGCCAATGCTGCCTTGAAGATAACCGAGATTACAAGCATGGTGGGAAAGACCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NmrA

Protein Analysis

416

Amino Acids

45.9

Weight (kDa)

8.53

Isoelectric Point (pI)

30.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NmrA PF05368 45 - 293 4.3e-16 NmrA-like family
NAD_binding_10 PF13460 83 - 198 7.7e-06 NAD(P)H-binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015401)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G35250
fragaria_vesca FvH4_2g16360 FvH4_2g16360 FvH4_2g16360
malus_domestica MD05G1131800.v1.1
prunus_persica Prupe.8G176300_v2.0.a1
pyrus_communis pycom05g12860
rosa_chinensis RchiOBHm_Chr6g0280111
rosa_laevigata RLG00000013088
rosa_multiflora Rmu_sc0007137.1_g000006
rosa_roxburghii Rroxscaffold_7G00188370 Rroxscaffold_7G00189360
rosa_rugosa Rorug06G0130000
rosa_samantha Rh6AG240300 Rh6BG244100
rosa_wichuraiana Rw6G020940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 223
Acc36I ACCTGC 3 cut(s) 223, 313, 1110
AccB1I GGYRCC 1 cut(s) 72
AccII CGCG 1 cut(s) 236
AciI CCGC 7 cut(s) 76, 132, 135, 236, 239, 785, 1067
AcoI YGGCCR 1 cut(s) 1195
AcsI RAATTY 2 cut(s) 196, 434
AcuI CTGAAG 2 cut(s) 495, 1104
AfaI GTAC 2 cut(s) 169, 594
AfiI CCNNNNNNNGG 1 cut(s) 138
AflII CTTAAG 2 cut(s) 518, 826
AgsI TTSAA 2 cut(s) 450, 1211
AjnI CCWGG 2 cut(s) 660, 1035
AleI CACNNNNGTG 1 cut(s) 459
Alw26I GTCTC 2 cut(s) 290, 1014
Ama87I CYCGRG 1 cut(s) 174
AoxI GGCC 4 cut(s) 171, 733, 918, 1195
ApeKI GCWGC 4 cut(s) 908, 1064, 1151, 1203
ApoI RAATTY 2 cut(s) 196, 434
Asp700I GAANNNNTTC 1 cut(s) 513
AspLEI GCGC 1 cut(s) 236
AspS9I GGNCC 2 cut(s) 172, 734
AsuC2I CCSGG 3 cut(s) 175, 176, 207
AsuHPI GGTGA 3 cut(s) 38, 78, 172
AvaI CYCGRG 1 cut(s) 174
BalI TGGCCA 1 cut(s) 1197
BanI GGYRCC 1 cut(s) 72
BauI CACGAG 1 cut(s) 738
BbvI GCAGC 4 cut(s) 895, 1076, 1138, 1190
BccI CCATC 1 cut(s) 51
BceAI ACGGC 2 cut(s) 186, 905
BciT130I CCWGG 2 cut(s) 662, 1037
BclI TGATCA 1 cut(s) 1090
BcnI CCSGG 3 cut(s) 175, 176, 207
BcoDI GTCTC 2 cut(s) 290, 1014
BfaI CTAG 3 cut(s) 672, 849, 1043
BfmI CTRYAG 2 cut(s) 145, 1152
BfrI CTTAAG 2 cut(s) 518, 826
BfuAI ACCTGC 3 cut(s) 223, 313, 1110
BisI GCNGC 7 cut(s) 76, 135, 237, 909, 1065, 1152, 1204
BlsI GCNGC 7 cut(s) 77, 136, 238, 910, 1066, 1153, 1205
Bme1390I CCNGG 5 cut(s) 175, 176, 207, 662, 1037
BmeT110I CYCGRG 1 cut(s) 174
BmgT120I GGNCC 2 cut(s) 172, 734
BmiI GGNNCC 5 cut(s) 74, 204, 229, 363, 1100
BmrFI CCNGG 5 cut(s) 175, 176, 207, 662, 1037
BmsI GCATC 2 cut(s) 478, 619
BpmI CTGGAG 2 cut(s) 201, 1205
Bpu10I CCTNAGC 1 cut(s) 284
BpuMI CCSGG 3 cut(s) 175, 176, 207
BsaI GGTCTC 1 cut(s) 290
BsaJI CCNNGG 4 cut(s) 174, 206, 660, 1036
BsaXI ACNNNNNCTCC 4 cut(s) 133, 163, 482, 512
Bsc4I CCNNNNNNNGG 1 cut(s) 138
Bse118I RCCGGY 1 cut(s) 224
Bse1I ACTGG 2 cut(s) 352, 1188
Bse3DI GCAATG 1 cut(s) 426
BseBI CCWGG 2 cut(s) 662, 1037
BseDI CCNNGG 4 cut(s) 174, 206, 660, 1036
BseGI GGATG 1 cut(s) 469
BseLI CCNNNNNNNGG 1 cut(s) 138
BseMI GCAATG 1 cut(s) 426
BseMII CTCAG 1 cut(s) 262
BseNI ACTGG 2 cut(s) 352, 1188
BseRI GAGGAG 1 cut(s) 374
BseXI GCAGC 4 cut(s) 895, 1076, 1138, 1190
BseYI CCCAGC 1 cut(s) 21
Bsh1236I CGCG 1 cut(s) 236
BshFI GGCC 4 cut(s) 173, 735, 920, 1197
BshNI GGYRCC 1 cut(s) 72
BsiHKCI CYCGRG 1 cut(s) 174
BsiSI CCGG 4 cut(s) 175, 206, 225, 231
BslFI GGGAC 1 cut(s) 223
BslI CCNNNNNNNGG 1 cut(s) 138
BsmAI GTCTC 2 cut(s) 290, 1014
BsmFI GGGAC 1 cut(s) 223
BsnI GGCC 4 cut(s) 173, 735, 920, 1197
Bso31I GGTCTC 1 cut(s) 290
BsoBI CYCGRG 1 cut(s) 174
Bsp143I GATC 2 cut(s) 492, 1090
BspACI CCGC 7 cut(s) 76, 132, 135, 236, 239, 785, 1067
BspANI GGCC 4 cut(s) 173, 735, 920, 1197
BspCNI CTCAG 1 cut(s) 261
BspFNI CGCG 1 cut(s) 236
BspLI GGNNCC 5 cut(s) 74, 204, 229, 363, 1100
BspMAI CTGCAG 1 cut(s) 1156
BspMI ACCTGC 3 cut(s) 223, 313, 1110
BspT107I GGYRCC 1 cut(s) 72
BspTI CTTAAG 2 cut(s) 518, 826
BspTNI GGTCTC 1 cut(s) 290
BsrDI GCAATG 1 cut(s) 426
BsrFI RCCGGY 1 cut(s) 224
BsrI ACTGG 2 cut(s) 352, 1188
BssAI RCCGGY 1 cut(s) 224
BssECI CCNNGG 4 cut(s) 174, 206, 660, 1036
BssMI GATC 2 cut(s) 492, 1090
BssSI CACGAG 1 cut(s) 738
Bst2BI CACGAG 1 cut(s) 738
Bst2UI CCWGG 2 cut(s) 662, 1037
Bst4CI ACNGT 3 cut(s) 268, 461, 811
Bst6I CTCTTC 1 cut(s) 600
BstAFI CTTAAG 2 cut(s) 518, 826
BstC8I GCNNGC 3 cut(s) 27, 733, 936
BstDEI CTNAG 2 cut(s) 248, 284
BstF5I GGATG 1 cut(s) 469
BstFNI CGCG 1 cut(s) 236
BstHHI GCGC 1 cut(s) 236
BstKTI GATC 2 cut(s) 495, 1093
BstMAI GTCTC 2 cut(s) 290, 1014
BstMBI GATC 2 cut(s) 492, 1090
BstMWI GCNNNNNNNGC 5 cut(s) 850, 917, 940, 1064, 1203
BstNI CCWGG 2 cut(s) 662, 1037
BstNSI RCATGY 1 cut(s) 558
BstSCI CCNGG 5 cut(s) 173, 174, 205, 660, 1035
BstSFI CTRYAG 2 cut(s) 145, 1152
BstUI CGCG 1 cut(s) 236
BstV1I GCAGC 4 cut(s) 895, 1076, 1138, 1190
BsuRI GGCC 4 cut(s) 173, 735, 920, 1197
BtsCI GGATG 1 cut(s) 469
BtsIMutI CAGTG 3 cut(s) 345, 504, 1246
BveI ACCTGC 3 cut(s) 223, 313, 1110
Cac8I GCNNGC 3 cut(s) 27, 733, 936
CfoI GCGC 1 cut(s) 236
Cfr10I RCCGGY 1 cut(s) 224
Cfr13I GGNCC 2 cut(s) 172, 734
Cfr9I CCCGGG 1 cut(s) 174
Csp6I GTAC 2 cut(s) 168, 593
CspCI CAANNNNNGTGG 2 cut(s) 1216, 1251
CviAII CATG 5 cut(s) 69, 555, 565, 744, 1232
CviQI GTAC 2 cut(s) 168, 593
DdeI CTNAG 2 cut(s) 248, 284
DpnI GATC 2 cut(s) 494, 1092
DpnII GATC 2 cut(s) 492, 1090
EaeI YGGCCR 1 cut(s) 1195
Eam1104I CTCTTC 1 cut(s) 600
EarI CTCTTC 1 cut(s) 600
EciI GGCGGA 1 cut(s) 254
Eco31I GGTCTC 1 cut(s) 290
Eco57I CTGAAG 2 cut(s) 495, 1104
Eco88I CYCGRG 1 cut(s) 174
EcoRII CCWGG 2 cut(s) 660, 1035
FaeI CATG 5 cut(s) 72, 558, 568, 747, 1235
FalI AAGNNNNNCTT 2 cut(s) 468, 500
FaqI GGGAC 1 cut(s) 223
FatI CATG 5 cut(s) 68, 554, 564, 743, 1231
FauI CCCGC 1 cut(s) 778
FbaI TGATCA 1 cut(s) 1090
Fnu4HI GCNGC 7 cut(s) 76, 135, 237, 909, 1065, 1152, 1204
FokI GGATG 1 cut(s) 456
Fsp4HI GCNGC 7 cut(s) 76, 135, 237, 909, 1065, 1152, 1204
FspBI CTAG 3 cut(s) 672, 849, 1043
GlaI GCGC 1 cut(s) 235
GluI GCNGC 7 cut(s) 76, 135, 237, 909, 1065, 1152, 1204
GsaI CCCAGC 1 cut(s) 25
GsuI CTGGAG 2 cut(s) 201, 1205
HaeIII GGCC 4 cut(s) 173, 735, 920, 1197
HapII CCGG 4 cut(s) 175, 206, 225, 231
HhaI GCGC 1 cut(s) 236
Hin1II CATG 5 cut(s) 72, 558, 568, 747, 1235
Hin6I GCGC 1 cut(s) 234
HinP1I GCGC 1 cut(s) 234
HincII GTYRAC 1 cut(s) 678
HindII GTYRAC 1 cut(s) 678
HindIII AAGCTT 1 cut(s) 716
HinfI GANTC 3 cut(s) 426, 524, 561
HpaII CCGG 4 cut(s) 175, 206, 225, 231
HphI GGTGA 3 cut(s) 38, 78, 172
Hpy166II GTNNAC 4 cut(s) 168, 678, 864, 1181
Hpy188I TCNGA 2 cut(s) 251, 898
Hpy188III TCNNGA 2 cut(s) 356, 473
Hpy8I GTNNAC 4 cut(s) 168, 678, 864, 1181
HpyAV CCTTC 2 cut(s) 380, 953
HpyCH4III ACNGT 3 cut(s) 268, 461, 811
HpyF10VI GCNNNNNNNGC 5 cut(s) 850, 917, 940, 1064, 1203
HpyF3I CTNAG 2 cut(s) 248, 284
Hsp92II CATG 5 cut(s) 72, 558, 568, 747, 1235
HspAI GCGC 1 cut(s) 234
Ksp22I TGATCA 1 cut(s) 1090
Kzo9I GATC 2 cut(s) 492, 1090
LmnI GCTCC 4 cut(s) 141, 208, 233, 361
Lsp1109I GCAGC 4 cut(s) 895, 1076, 1138, 1190
LweI GCATC 2 cut(s) 478, 619
MaeI CTAG 3 cut(s) 672, 849, 1043
MaeIII GTNAC 2 cut(s) 461, 832
MalI GATC 2 cut(s) 494, 1092
MboI GATC 2 cut(s) 492, 1090
MboII GAAGA 4 cut(s) 102, 617, 961, 1223
MlsI TGGCCA 1 cut(s) 1197
MluCI AATT 5 cut(s) 196, 434, 546, 642, 1121
MluNI TGGCCA 1 cut(s) 1197
MmeI TCCRAC 2 cut(s) 41, 124
Mox20I TGGCCA 1 cut(s) 1197
MroXI GAANNNNTTC 1 cut(s) 513
MscI TGGCCA 1 cut(s) 1197
MseI TTAA 5 cut(s) 519, 708, 827, 1124, 1161
MslI CAYNNNNRTG 1 cut(s) 459
Msp20I TGGCCA 1 cut(s) 1197
MspA1I CMGCKG 3 cut(s) 25, 844, 1067
MspCI CTTAAG 2 cut(s) 518, 826
MspI CCGG 4 cut(s) 175, 206, 225, 231
MspR9I CCNGG 5 cut(s) 175, 176, 207, 662, 1037
MvaI CCWGG 2 cut(s) 662, 1037
MvnI CGCG 1 cut(s) 236
MwoI GCNNNNNNNGC 5 cut(s) 850, 917, 940, 1064, 1203
NciI CCSGG 3 cut(s) 175, 176, 207
NdeII GATC 2 cut(s) 492, 1090
NlaIII CATG 5 cut(s) 72, 558, 568, 747, 1235
NlaIV GGNNCC 5 cut(s) 74, 204, 229, 363, 1100
NmuCI GTSAC 1 cut(s) 461
NspI RCATGY 1 cut(s) 558
OliI CACNNNNGTG 1 cut(s) 459
PaqCI CACCTGC 1 cut(s) 223
PdmI GAANNNNTTC 1 cut(s) 513
PfeI GAWTC 3 cut(s) 426, 524, 561
PkrI GCNGC 7 cut(s) 77, 136, 238, 910, 1066, 1153, 1205
Psp6I CCWGG 2 cut(s) 660, 1035
PspFI CCCAGC 1 cut(s) 21
PspGI CCWGG 2 cut(s) 660, 1035
PspN4I GGNNCC 5 cut(s) 74, 204, 229, 363, 1100
PspPI GGNCC 2 cut(s) 172, 734
PsrI GAACNNNNNNTAC 2 cut(s) 975, 1007
PstI CTGCAG 1 cut(s) 1156
PvuII CAGCTG 2 cut(s) 25, 844
RsaI GTAC 2 cut(s) 169, 594
RsaNI GTAC 2 cut(s) 168, 593
RseI CAYNNNNRTG 1 cut(s) 459
SaqAI TTAA 5 cut(s) 519, 708, 827, 1124, 1161
SatI GCNGC 7 cut(s) 76, 135, 237, 909, 1065, 1152, 1204
Sau3AI GATC 2 cut(s) 492, 1090
Sau96I GGNCC 2 cut(s) 172, 734
ScrFI CCNGG 5 cut(s) 175, 176, 207, 662, 1037
SfaNI GCATC 2 cut(s) 478, 619
SfcI CTRYAG 2 cut(s) 145, 1152
SmaI CCCGGG 1 cut(s) 176
SmiMI CAYNNNNRTG 1 cut(s) 459
SmlI CTYRAG 2 cut(s) 518, 826
SmoI CTYRAG 2 cut(s) 518, 826
SrfI GCCCGGGC 1 cut(s) 176
Sse9I AATT 5 cut(s) 196, 434, 546, 642, 1121
SsiI CCGC 7 cut(s) 76, 132, 135, 236, 239, 785, 1067
SspMI CTAG 3 cut(s) 672, 849, 1043
StyD4I CCNGG 5 cut(s) 173, 174, 205, 660, 1035
TaaI ACNGT 3 cut(s) 268, 461, 811
TaqI TCGA 1 cut(s) 998
TasI AATT 5 cut(s) 196, 434, 546, 642, 1121
TauI GCSGC 3 cut(s) 78, 137, 239
TfiI GAWTC 3 cut(s) 426, 524, 561
Tru1I TTAA 5 cut(s) 519, 708, 827, 1124, 1161
Tru9I TTAA 5 cut(s) 519, 708, 827, 1124, 1161
TscAI CASTG 2 cut(s) 352, 511
TseFI GTSAC 1 cut(s) 461
TseI GCWGC 4 cut(s) 908, 1064, 1151, 1203
Tsp45I GTSAC 1 cut(s) 461
TspDTI ATGAA 4 cut(s) 314, 553, 961, 1134
TspGWI ACGGA 2 cut(s) 668, 1111
TspMI CCCGGG 1 cut(s) 174
TspRI CASTG 2 cut(s) 352, 511
Vha464I CTTAAG 2 cut(s) 518, 826
XapI RAATTY 2 cut(s) 196, 434
XceI RCATGY 1 cut(s) 558
XmaI CCCGGG 1 cut(s) 174
XmnI GAANNNNTTC 1 cut(s) 513
XspI CTAG 3 cut(s) 672, 849, 1043
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.