Rw6G020940

NmrA-like family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0015401
Physical Location & Seq
Reverse (-)
41721992 .. 41725162
3171 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G020940.1

Sequence Viewer

Length: 1107 bp
ATGGTGCCGCACTTATCACCAGACCATCTCCAACTCACTCCTTCCGCTTCCTCAATCTCTACGGCCACTGGGAGTTGTACTCGGGGTTTGGTGAGGTGCACGGCCCGGTCGGGAGTTGGGGCTGTGAATTTGGCTCCGGGGACACCTGTCAGGCCCACGAGTATACTAGTGGTTGGCGCGACTGGAACGCTGGGGAGGCAAATTGTGAGGCGAGCGCTGGATGAAGGCTATGATGTTAGGTGCTTGGTTCGGCCTAGGCCGGCTCCGGCGGACTTTCTCAGGGATTGGGGTGCTACTGTTGTCAATGCAGACCTTAGCAAACCGGAGACCATACCTGCAACATTGGTTGGTGTTCATTCAGTTATTGATTGTGCCACGGGCCGTCCAGAGGAGCCCATCAAAAAGGTAGATTGGGAAGGGAAAGTTGCTCTAATACAATGTGCAAAGGCAATGGGGATCCAAAAATTTGTGTTCTTTTCAATCCACAACTGTGACAAGCATCCTGAAGTTCCTCTTATGGAGATCAAGTATTGCACTGAAAAGTTTCTTAAGGATTCAGGCATAAATCACATCATAATTCGTGCATGTGGATTCATGCAAGGGATTATTGGGCAGTATGCAGTACCTATATTGGAAGAGAAATCAGTTTGGGGAACAGATGCCCCTACAAGAATTGCATACATGGACACCCAGGATATAGCTCGGTTGACATTTATAGCTTTACGAAATGAGAATGTTAATGGGAAGCTTCTCACATTTGCTGGCCCTCGTGCATGGACAACCCAAGAGGTAATAACATTGTGTGAAAGGTTTGCGGGGCAAGAGGCAAACATTACCACAGTTCCTGTTTCTGTCTTAAGAGTAACCCGTCAGCTGACTAGGCTTTTTGAGTGGACAAATGATGTTGCTGATAGATTGGCATTTTCAGAGGTCCTTTCAAGTGATACTGTTTTCTCTGTTCCAATGAACGAGACATATAGTCTTCTTGGTGTGGACGCAAAAGATATTGTTACTCTTGAAAAATATTTGCAGGATTACTTCACCAACATATTGAAGAAGTTGAAGGATCTCAAAGCACAATCTAAGCAATCTGACATTTACTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NmrA

Protein Analysis

368

Amino Acids

40.57

Weight (kDa)

8.02

Isoelectric Point (pI)

39.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NmrA PF05368 54 - 304 2.8e-28 NmrA-like family
Epimerase PF01370 55 - 160 1.1e-09 NAD dependent epimerase/dehydratase family
NAD_binding_10 PF13460 59 - 209 4.6e-17 NAD(P)H-binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015401)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G35250
fragaria_vesca FvH4_2g16360 FvH4_2g16360 FvH4_2g16360
malus_domestica MD05G1131800.v1.1
prunus_persica Prupe.8G176300_v2.0.a1
pyrus_communis pycom05g12860
rosa_chinensis RchiOBHm_Chr6g0280111
rosa_laevigata RLG00000013088
rosa_multiflora Rmu_sc0007137.1_g000006
rosa_roxburghii Rroxscaffold_7G00188370 Rroxscaffold_7G00189360
rosa_rugosa Rorug06G0130000
rosa_samantha Rh6AG240300 Rh6BG244100
rosa_wichuraiana Rw6G020940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 343
AccB1I GGYRCC 1 cut(s) 4
AccI GTMKAC 1 cut(s) 163
AccII CGCG 1 cut(s) 179
AciI CCGC 4 cut(s) 8, 45, 269, 815
AclWI GGATC 3 cut(s) 451, 464, 1074
AcoI YGGCCR 1 cut(s) 63
AcsI RAATTY 2 cut(s) 127, 464
AcuI CTGAAG 1 cut(s) 525
AfaI GTAC 2 cut(s) 79, 624
AfeI AGCGCT 1 cut(s) 216
AfiI CCNNNNNNNGG 1 cut(s) 388
AflII CTTAAG 2 cut(s) 548, 856
AgsI TTSAA 5 cut(s) 480, 939, 1019, 1054, 1063
AhdI GACNNNNNGTC 1 cut(s) 978
AhlI ACTAGT 1 cut(s) 166
AjnI CCWGG 1 cut(s) 690
AleI CACNNNNGTG 1 cut(s) 489
AluBI AGCT 4 cut(s) 701, 719, 748, 874
AluI AGCT 4 cut(s) 701, 719, 748, 874
Alw21I GWGCWC 1 cut(s) 101
Alw26I GTCTC 2 cut(s) 320, 965
Alw44I GTGCAC 1 cut(s) 97
AlwI GGATC 3 cut(s) 451, 464, 1074
AlwNI CAGNNNCTG 1 cut(s) 845
Ama87I CYCGRG 1 cut(s) 81
Aor51HI AGCGCT 1 cut(s) 216
AoxI GGCC 7 cut(s) 63, 102, 152, 251, 257, 379, 763
ApaLI GTGCAC 1 cut(s) 97
ApoI RAATTY 2 cut(s) 127, 464
Asp700I GAANNNNTTC 1 cut(s) 543
AspA2I CCTAGG 1 cut(s) 254
AspLEI GCGC 2 cut(s) 179, 217
AspS9I GGNCC 5 cut(s) 103, 153, 379, 764, 931
AsuC2I CCSGG 2 cut(s) 106, 138
AsuHPI GGTGA 3 cut(s) 9, 103, 1033
AvaI CYCGRG 1 cut(s) 81
AvaII GGWCC 1 cut(s) 931
AvrII CCTAGG 1 cut(s) 254
BaeGI GKGCMC 1 cut(s) 101
BamHI GGATCC 1 cut(s) 456
BanI GGYRCC 1 cut(s) 4
BanII GRGCYC 1 cut(s) 396
BauI CACGAG 2 cut(s) 157, 768
BbsI GAAGAC 1 cut(s) 974
Bbv12I GWGCWC 1 cut(s) 101
BccI CCATC 2 cut(s) 33, 404
BceAI ACGGC 3 cut(s) 78, 117, 366
BciT130I CCWGG 1 cut(s) 692
BcnI CCSGG 2 cut(s) 106, 138
BcoDI GTCTC 2 cut(s) 320, 965
BcuI ACTAGT 1 cut(s) 166
BfaI CTAG 3 cut(s) 167, 255, 879
BfoI RGCGCY 1 cut(s) 218
BfrI CTTAAG 2 cut(s) 548, 856
BfuAI ACCTGC 1 cut(s) 343
BisI GCNGC 1 cut(s) 8
BlnI CCTAGG 1 cut(s) 254
BlsI GCNGC 1 cut(s) 9
Bme1390I CCNGG 3 cut(s) 106, 138, 692
Bme18I GGWCC 1 cut(s) 931
BmeRI GACNNNNNGTC 1 cut(s) 978
BmeT110I CYCGRG 1 cut(s) 81
BmgT120I GGNCC 5 cut(s) 103, 153, 379, 764, 931
BmiI GGNNCC 5 cut(s) 6, 135, 264, 393, 458
BmrFI CCNGG 3 cut(s) 106, 138, 692
BmrI ACTGGG 1 cut(s) 78
BmsI GCATC 2 cut(s) 508, 649
BmuI ACTGGG 1 cut(s) 78
BoxI GACNNNNGTC 1 cut(s) 146
BpiI GAAGAC 1 cut(s) 974
BplI GAGNNNNNCTC 2 cut(s) 64, 96
Bpu10I CCTNAGC 1 cut(s) 314
BpuMI CCSGG 2 cut(s) 106, 138
BsaI GGTCTC 1 cut(s) 320
BsaJI CCNNGG 4 cut(s) 137, 254, 375, 690
BsaWI WCCGGW 1 cut(s) 322
BsaXI ACNNNNNCTCC 2 cut(s) 512, 542
Bsc4I CCNNNNNNNGG 1 cut(s) 388
Bse118I RCCGGY 1 cut(s) 259
Bse1I ACTGG 2 cut(s) 73, 187
Bse3DI GCAATG 1 cut(s) 456
BseBI CCWGG 1 cut(s) 692
BseDI CCNNGG 4 cut(s) 137, 254, 375, 690
BseGI GGATG 2 cut(s) 226, 499
BseLI CCNNNNNNNGG 1 cut(s) 388
BseMI GCAATG 1 cut(s) 456
BseMII CTCAG 1 cut(s) 292
BseNI ACTGG 2 cut(s) 73, 187
BseRI GAGGAG 1 cut(s) 404
BseSI GKGCMC 1 cut(s) 101
BseYI CCCAGC 1 cut(s) 190
Bsh1236I CGCG 1 cut(s) 179
Bsh1285I CGRYCG 1 cut(s) 110
BshFI GGCC 7 cut(s) 65, 104, 154, 253, 259, 381, 765
BshNI GGYRCC 1 cut(s) 4
BsiEI CGRYCG 1 cut(s) 110
BsiHKAI GWGCWC 1 cut(s) 101
BsiHKCI CYCGRG 1 cut(s) 81
BsiSI CCGG 5 cut(s) 106, 137, 260, 266, 323
BslFI GGGAC 1 cut(s) 154
BslI CCNNNNNNNGG 1 cut(s) 388
BsmAI GTCTC 2 cut(s) 320, 965
BsmFI GGGAC 1 cut(s) 154
BsnI GGCC 7 cut(s) 65, 104, 154, 253, 259, 381, 765
Bso31I GGTCTC 1 cut(s) 320
BsoBI CYCGRG 1 cut(s) 81
Bsp1286I GDGCHC 2 cut(s) 101, 396
Bsp143I GATC 3 cut(s) 456, 522, 1066
BspACI CCGC 4 cut(s) 8, 45, 269, 815
BspANI GGCC 7 cut(s) 65, 104, 154, 253, 259, 381, 765
BspCNI CTCAG 1 cut(s) 291
BspFNI CGCG 1 cut(s) 179
BspLI GGNNCC 5 cut(s) 6, 135, 264, 393, 458
BspMI ACCTGC 1 cut(s) 343
BspPI GGATC 3 cut(s) 451, 464, 1074
BspT107I GGYRCC 1 cut(s) 4
BspTI CTTAAG 2 cut(s) 548, 856
BspTNI GGTCTC 1 cut(s) 320
BsrDI GCAATG 1 cut(s) 456
BsrFI RCCGGY 1 cut(s) 259
BsrI ACTGG 2 cut(s) 73, 187
BssAI RCCGGY 1 cut(s) 259
BssECI CCNNGG 4 cut(s) 137, 254, 375, 690
BssMI GATC 3 cut(s) 456, 522, 1066
BssNAI GTATAC 1 cut(s) 164
BssSI CACGAG 2 cut(s) 157, 768
BssT1I CCWWGG 1 cut(s) 254
Bst1107I GTATAC 1 cut(s) 164
Bst2BI CACGAG 2 cut(s) 157, 768
Bst2UI CCWGG 1 cut(s) 692
Bst4CI ACNGT 4 cut(s) 298, 491, 841, 949
Bst6I CTCTTC 1 cut(s) 630
BstAFI CTTAAG 2 cut(s) 548, 856
BstC8I GCNNGC 3 cut(s) 213, 261, 763
BstDEI CTNAG 3 cut(s) 278, 314, 1083
BstDSI CCRYGG 1 cut(s) 375
BstF5I GGATG 2 cut(s) 226, 499
BstFNI CGCG 1 cut(s) 179
BstH2I RGCGCY 1 cut(s) 218
BstHHI GCGC 2 cut(s) 179, 217
BstKTI GATC 3 cut(s) 459, 525, 1069
BstMAI GTCTC 2 cut(s) 320, 965
BstMBI GATC 3 cut(s) 456, 522, 1066
BstMCI CGRYCG 1 cut(s) 110
BstMWI GCNNNNNNNGC 2 cut(s) 196, 880
BstNI CCWGG 1 cut(s) 692
BstNSI RCATGY 1 cut(s) 588
BstPAI GACNNNNGTC 1 cut(s) 146
BstSCI CCNGG 3 cut(s) 104, 136, 690
BstSLI GKGCMC 1 cut(s) 101
BstUI CGCG 1 cut(s) 179
BstV2I GAAGAC 1 cut(s) 974
BstX2I RGATCY 2 cut(s) 456, 1066
BstYI RGATCY 2 cut(s) 456, 1066
BstZ17I GTATAC 1 cut(s) 164
BsuRI GGCC 7 cut(s) 65, 104, 154, 253, 259, 381, 765
BtgI CCRYGG 1 cut(s) 375
BtsCI GGATG 2 cut(s) 226, 499
BtsIMutI CAGTG 2 cut(s) 66, 534
BveI ACCTGC 1 cut(s) 343
Cac8I GCNNGC 3 cut(s) 213, 261, 763
CaiI CAGNNNCTG 1 cut(s) 845
CfoI GCGC 2 cut(s) 179, 217
Cfr10I RCCGGY 1 cut(s) 259
Cfr13I GGNCC 5 cut(s) 103, 153, 379, 764, 931
CseI GACGC 1 cut(s) 1004
Csp6I GTAC 2 cut(s) 78, 623
CviAII CATG 4 cut(s) 585, 595, 682, 774
CviQI GTAC 2 cut(s) 78, 623
DdeI CTNAG 3 cut(s) 278, 314, 1083
DpnI GATC 3 cut(s) 458, 524, 1068
DpnII GATC 3 cut(s) 456, 522, 1066
DriI GACNNNNNGTC 1 cut(s) 978
EaeI YGGCCR 1 cut(s) 63
Eam1104I CTCTTC 1 cut(s) 630
Eam1105I GACNNNNNGTC 1 cut(s) 978
EarI CTCTTC 1 cut(s) 630
EciI GGCGGA 1 cut(s) 284
Eco130I CCWWGG 1 cut(s) 254
Eco24I GRGCYC 1 cut(s) 396
Eco31I GGTCTC 1 cut(s) 320
Eco47I GGWCC 1 cut(s) 931
Eco47III AGCGCT 1 cut(s) 216
Eco57I CTGAAG 1 cut(s) 525
Eco88I CYCGRG 1 cut(s) 81
EcoO109I RGGNCCY 1 cut(s) 931
EcoRII CCWGG 1 cut(s) 690
EcoT14I CCWWGG 1 cut(s) 254
EcoT38I GRGCYC 1 cut(s) 396
ErhI CCWWGG 1 cut(s) 254
FaeI CATG 4 cut(s) 588, 598, 685, 777
FalI AAGNNNNNCTT 2 cut(s) 498, 530
FaqI GGGAC 1 cut(s) 154
FatI CATG 4 cut(s) 584, 594, 681, 773
FauI CCCGC 1 cut(s) 808
FblI GTMKAC 1 cut(s) 163
Fnu4HI GCNGC 1 cut(s) 8
FokI GGATG 2 cut(s) 233, 486
FriOI GRGCYC 1 cut(s) 396
Fsp4HI GCNGC 1 cut(s) 8
FspBI CTAG 3 cut(s) 167, 255, 879
GlaI GCGC 2 cut(s) 178, 216
GluI GCNGC 1 cut(s) 8
GsaI CCCAGC 1 cut(s) 194
HaeII RGCGCY 1 cut(s) 218
HaeIII GGCC 7 cut(s) 65, 104, 154, 253, 259, 381, 765
HapII CCGG 5 cut(s) 106, 137, 260, 266, 323
HgaI GACGC 1 cut(s) 1004
HhaI GCGC 2 cut(s) 179, 217
Hin1II CATG 4 cut(s) 588, 598, 685, 777
Hin6I GCGC 2 cut(s) 177, 215
HinP1I GCGC 2 cut(s) 177, 215
HincII GTYRAC 1 cut(s) 708
HindII GTYRAC 1 cut(s) 708
HindIII AAGCTT 1 cut(s) 746
HinfI GANTC 2 cut(s) 554, 591
HpaII CCGG 5 cut(s) 106, 137, 260, 266, 323
HphI GGTGA 3 cut(s) 9, 103, 1033
Hpy166II GTNNAC 5 cut(s) 99, 164, 708, 894, 994
Hpy188I TCNGA 2 cut(s) 928, 1093
Hpy188III TCNNGA 4 cut(s) 111, 386, 503, 1016
Hpy8I GTNNAC 5 cut(s) 99, 164, 708, 894, 994
HpyAV CCTTC 4 cut(s) 51, 218, 410, 1057
HpyCH4III ACNGT 4 cut(s) 298, 491, 841, 949
HpyF10VI GCNNNNNNNGC 2 cut(s) 196, 880
HpyF3I CTNAG 3 cut(s) 278, 314, 1083
Hsp92II CATG 4 cut(s) 588, 598, 685, 777
HspAI GCGC 2 cut(s) 177, 215
KroI GCCGGC 1 cut(s) 259
KroNI GCCGGC 1 cut(s) 261
Kzo9I GATC 3 cut(s) 456, 522, 1066
LmnI GCTCC 3 cut(s) 139, 268, 391
LweI GCATC 2 cut(s) 508, 649
MaeI CTAG 3 cut(s) 167, 255, 879
MaeIII GTNAC 3 cut(s) 491, 862, 1009
MalI GATC 3 cut(s) 458, 524, 1068
MboI GATC 3 cut(s) 456, 522, 1066
MboII GAAGA 3 cut(s) 647, 974, 1066
MflI RGATCY 2 cut(s) 456, 1066
MhlI GDGCHC 2 cut(s) 101, 396
MluCI AATT 5 cut(s) 127, 201, 464, 576, 672
MmeI TCCRAC 1 cut(s) 55
MroNI GCCGGC 1 cut(s) 259
MroXI GAANNNNTTC 1 cut(s) 543
MseI TTAA 3 cut(s) 549, 738, 857
MslI CAYNNNNRTG 1 cut(s) 489
MspA1I CMGCKG 1 cut(s) 874
MspCI CTTAAG 2 cut(s) 548, 856
MspI CCGG 5 cut(s) 106, 137, 260, 266, 323
MspR9I CCNGG 3 cut(s) 106, 138, 692
MvaI CCWGG 1 cut(s) 692
MvnI CGCG 1 cut(s) 179
MwoI GCNNNNNNNGC 2 cut(s) 196, 880
NaeI GCCGGC 1 cut(s) 261
NciI CCSGG 2 cut(s) 106, 138
NdeII GATC 3 cut(s) 456, 522, 1066
NgoMIV GCCGGC 1 cut(s) 259
NlaIII CATG 4 cut(s) 588, 598, 685, 777
NlaIV GGNNCC 5 cut(s) 6, 135, 264, 393, 458
NmuCI GTSAC 1 cut(s) 491
NspI RCATGY 1 cut(s) 588
OliI CACNNNNGTG 1 cut(s) 489
PdiI GCCGGC 1 cut(s) 261
PdmI GAANNNNTTC 1 cut(s) 543
PfeI GAWTC 2 cut(s) 554, 591
PkrI GCNGC 1 cut(s) 9
PpuMI RGGWCCY 1 cut(s) 931
PshAI GACNNNNGTC 1 cut(s) 146
Psp5II RGGWCCY 1 cut(s) 931
Psp6I CCWGG 1 cut(s) 690
PspFI CCCAGC 1 cut(s) 190
PspGI CCWGG 1 cut(s) 690
PspN4I GGNNCC 5 cut(s) 6, 135, 264, 393, 458
PspPI GGNCC 5 cut(s) 103, 153, 379, 764, 931
PspPPI RGGWCCY 1 cut(s) 931
PstNI CAGNNNCTG 1 cut(s) 845
PsuI RGATCY 2 cut(s) 456, 1066
PvuII CAGCTG 1 cut(s) 874
RsaI GTAC 2 cut(s) 79, 624
RsaNI GTAC 2 cut(s) 78, 623
RseI CAYNNNNRTG 1 cut(s) 489
SaqAI TTAA 3 cut(s) 549, 738, 857
SatI GCNGC 1 cut(s) 8
Sau3AI GATC 3 cut(s) 456, 522, 1066
Sau96I GGNCC 5 cut(s) 103, 153, 379, 764, 931
ScrFI CCNGG 3 cut(s) 106, 138, 692
SduI GDGCHC 2 cut(s) 101, 396
SfaNI GCATC 2 cut(s) 508, 649
SinI GGWCC 1 cut(s) 931
SmiMI CAYNNNNRTG 1 cut(s) 489
SmlI CTYRAG 2 cut(s) 548, 856
SmoI CTYRAG 2 cut(s) 548, 856
SpeI ACTAGT 1 cut(s) 166
Sse9I AATT 5 cut(s) 127, 201, 464, 576, 672
SsiI CCGC 4 cut(s) 8, 45, 269, 815
SspI AATATT 1 cut(s) 1025
SspMI CTAG 3 cut(s) 167, 255, 879
StyD4I CCNGG 3 cut(s) 104, 136, 690
StyI CCWWGG 1 cut(s) 254
TaaI ACNGT 4 cut(s) 298, 491, 841, 949
TasI AATT 5 cut(s) 127, 201, 464, 576, 672
TatI WGTACW 1 cut(s) 77
TauI GCSGC 1 cut(s) 10
TfiI GAWTC 2 cut(s) 554, 591
Tru1I TTAA 3 cut(s) 549, 738, 857
Tru9I TTAA 3 cut(s) 549, 738, 857
TscAI CASTG 2 cut(s) 73, 541
TseFI GTSAC 1 cut(s) 491
Tsp45I GTSAC 1 cut(s) 491
TspDTI ATGAA 4 cut(s) 237, 344, 583, 980
TspRI CASTG 2 cut(s) 73, 541
Vha464I CTTAAG 2 cut(s) 548, 856
VneI GTGCAC 1 cut(s) 97
VpaK11BI GGWCC 1 cut(s) 931
XapI RAATTY 2 cut(s) 127, 464
XceI RCATGY 1 cut(s) 588
XmaJI CCTAGG 1 cut(s) 254
XmiI GTMKAC 1 cut(s) 163
XmnI GAANNNNTTC 1 cut(s) 543
XspI CTAG 3 cut(s) 167, 255, 879
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.