Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0014018

Physical Location & Seq

Genomic Coordinates Reverse (-)

18956218 .. 18958266

Gene Structure 2049 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G200000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

ATGCAGTTGCTTCCATGCCCAAGCCGCCTGAGATCTCTCCTCTTATCCTGCAAAGATAAAGCATCCACAGCTAAAATTCATGCTCTTATGATATTGACGGGTACCATTACTTATGGAAACTCCAATGCCCGACTTATAGCAACGTATGCACGAATTGGCGATATTGTGTCAGCCCGTAAGGTGTTCGATAAATTGTCTCAAAGAGGCATACATGCATGGAATGCCATGATAATCGCATATTCTCGTCAATATTGCCCATCTGAAGTCGTAAGTTTATATCATCAGATGATATTAGATAGAGTTAGACCTGATAGCTCGACTTTCACTGTTGCCCTCAAGGCATGTGCAAGCACATTGGACTTGAAAACTGGTGAAGAAATATGGTCTAAAGCAGTAAATTGCGGATACGAATATGATGTGTTTGTGGGTTCATCTGTTTTGAATTTGTACGCCAAGTGTGGGAAGATGGATGAAGCAGTGGTGGTTTTCAATAAGATGCCTAGAAGGGACCTTGTTTGTTGGACAACAATGGTAACAGGGTTTGTGCAGAGTGGAAGGCCAATGGAAGCAGTTGATATGTATAAGAGAATGCAAAATGAGGGAATGGAATTTGATGGGGTTGTGCTGATGGGGTTAGTGCAGGCTTGTGCAAGTCTTGGGGACTTGAGGTTGGGTCTCTCTGTTCACGGGTTTATGATTCGGACCGGTCTTCCTATGGATGTTATGGTTCAAACCAGCCTTGTGCATATGTATGCTAAGAGTGGACATTTGGAGCTAGCTTCTTGTGTGTTCAATAAGATGCCTTACAAGAATGCCATTTCTTGGGGTGCTTTGATTTCTGGCTTTGCTCAAAATGGTTTTGCAGGGCATGCACTTGAAATGTTGGTAGAGATGCAGGGCAGCGGATTTGAACCCGACTCAGTGTCTCTTGTGAGCGCACTTCTAGCATGTTCACAAGTTGGATTTTTGAAATTGGATTGTTTCCAGAGACTTGATCTCTTGGAATGCCATGATTGCAAGCTATGGGATTCATGGGCATGGAGAGGAAGCTCTAGTACTCTTCCTCCAGATGACGGAGACGAACATAAAACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

365

Amino Acids

40.22

Weight (kDa)

7.07

Isoelectric Point (pI)

41.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014018)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25060
fragaria_vesca	FvH4_2g18670
malus_domestica	MD05G1172600.v1.1
prunus_persica	Prupe.8G200000_v2.0.a1
pyrus_communis	pycom05g15920
rosa_chinensis	RchiOBHm_Chr6g0284231
rosa_laevigata	RLG00000012754
rosa_multiflora	Rmu_sc0002698.1_g000026 Rmu_sc0002698.1_g000027 Rmu_sc0024251.1_g000001
rosa_roxburghii	Rroxscaffold_7G00184760
rosa_rugosa	Rorug06G0162100
rosa_samantha	Rh6AG275000 Rh6BG275500 Rh6CG277200 Rh6DG269900
rosa_wichuraiana	Rw6G023660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	101
AccB1I	GGYRCC	1 cut(s)	101
AccB7I	CCANNNNNTGG	1 cut(s)	822
AciI	CCGC	3 cut(s)	25, 402, 903
AcsI	RAATTY	3 cut(s)	75, 442, 608
AcuI	CTGAAG	1 cut(s)	282
AfaI	GTAC	3 cut(s)	103, 449, 1057
AfiI	CCNNNNNNNGG	3 cut(s)	459, 822, 1073
AgeI	ACCGGT	1 cut(s)	704
AgsI	TTSAA	8 cut(s)	364, 442, 490, 731, 793, 878, 911, 970
AhdI	GACNNNNNGTC	1 cut(s)	922
AluBI	AGCT	6 cut(s)	71, 315, 775, 779, 1021, 1050
AluI	AGCT	6 cut(s)	71, 315, 775, 779, 1021, 1050
Alw26I	GTCTC	5 cut(s)	201, 680, 930, 982, 1071
AoxI	GGCC	1 cut(s)	557
ApeKI	GCWGC	1 cut(s)	900
ApoI	RAATTY	3 cut(s)	75, 442, 608
AsiGI	ACCGGT	1 cut(s)	704
Asp718I	GGTACC	1 cut(s)	101
AspLEI	GCGC	1 cut(s)	938
AspS9I	GGNCC	2 cut(s)	508, 702
AsuHPI	GGTGA	1 cut(s)	383
AsuNHI	GCTAGC	1 cut(s)	775
AvaII	GGWCC	2 cut(s)	508, 702
BanI	GGYRCC	1 cut(s)	101
BarI	GAAGNNNNNNTAC	2 cut(s)	1039, 1071
BbsI	GAAGAC	1 cut(s)	701
BbvI	GCAGC	1 cut(s)	912
BccI	CCATC	4 cut(s)	265, 460, 608, 622
BciVI	GTATCC	1 cut(s)	398
BcoDI	GTCTC	5 cut(s)	201, 680, 930, 982, 1071
BfaI	CTAG	4 cut(s)	501, 776, 944, 1053
BfuI	GTATCC	1 cut(s)	398
BglI	GCCNNNNNGGC	1 cut(s)	338
BglII	AGATCT	1 cut(s)	32
BisI	GCNGC	2 cut(s)	25, 901
BlsI	GCNGC	2 cut(s)	26, 902
BmcAI	AGTACT	1 cut(s)	1057
Bme18I	GGWCC	2 cut(s)	508, 702
BmeRI	GACNNNNNGTC	1 cut(s)	922
BmgT120I	GGNCC	2 cut(s)	508, 702
BmiI	GGNNCC	2 cut(s)	103, 509
BmsI	GCATC	4 cut(s)	71, 486, 789, 882
BmtI	GCTAGC	1 cut(s)	779
BpiI	GAAGAC	1 cut(s)	701
BpmI	CTGGAG	1 cut(s)	1050
BpuEI	CTTGAG	2 cut(s)	320, 685
BsaI	GGTCTC	1 cut(s)	680
BsaWI	WCCGGW	1 cut(s)	704
BsaXI	ACNNNNNCTCC	2 cut(s)	1048, 1078
Bsc4I	CCNNNNNNNGG	3 cut(s)	459, 822, 1073
Bse118I	RCCGGY	1 cut(s)	704
Bse1I	ACTGG	1 cut(s)	373
BseGI	GGATG	3 cut(s)	62, 475, 724
BseLI	CCNNNNNNNGG	3 cut(s)	459, 822, 1073
BseMII	CTCAG	2 cut(s)	20, 933
BseNI	ACTGG	1 cut(s)	373
BseRI	GAGGAG	1 cut(s)	29
BseXI	GCAGC	1 cut(s)	912
BsgI	GTGCAG	2 cut(s)	566, 659
BshFI	GGCC	1 cut(s)	559
BshNI	GGYRCC	1 cut(s)	101
BshTI	ACCGGT	1 cut(s)	704
BsiSI	CCGG	1 cut(s)	705
BslFI	GGGAC	2 cut(s)	521, 674
BslI	CCNNNNNNNGG	3 cut(s)	459, 822, 1073
BsmAI	GTCTC	5 cut(s)	201, 680, 930, 982, 1071
BsmBI	CGTCTC	1 cut(s)	1071
BsmFI	GGGAC	2 cut(s)	521, 674
BsmI	GAATGC	4 cut(s)	226, 594, 817, 1010
BsnI	GGCC	1 cut(s)	559
Bso31I	GGTCTC	1 cut(s)	680
Bsp143I	GATC	2 cut(s)	32, 994
BspACI	CCGC	3 cut(s)	25, 402, 903
BspANI	GGCC	1 cut(s)	559
BspCNI	CTCAG	2 cut(s)	21, 932
BspLI	GGNNCC	2 cut(s)	103, 509
BspOI	GCTAGC	1 cut(s)	779
BspT107I	GGYRCC	1 cut(s)	101
BspTNI	GGTCTC	1 cut(s)	680
BsrFI	RCCGGY	1 cut(s)	704
BsrI	ACTGG	1 cut(s)	373
BssAI	RCCGGY	1 cut(s)	704
BssMI	GATC	2 cut(s)	32, 994
Bst4CI	ACNGT	1 cut(s)	328
Bst6I	CTCTTC	1 cut(s)	1065
BstAPI	GCANNNNNTGC	3 cut(s)	146, 221, 869
BstC8I	GCNNGC	5 cut(s)	349, 642, 777, 870, 1019
BstDEI	CTNAG	3 cut(s)	29, 756, 919
BstF5I	GGATG	3 cut(s)	62, 475, 724
BstHHI	GCGC	1 cut(s)	938
BstKTI	GATC	2 cut(s)	35, 997
BstMAI	GTCTC	5 cut(s)	201, 680, 930, 982, 1071
BstMBI	GATC	2 cut(s)	32, 994
BstMWI	GCNNNNNNNGC	8 cut(s)	24, 68, 146, 221, 338, 869, 944, 1014
BstNSI	RCATGY	4 cut(s)	215, 345, 872, 951
BstV1I	GCAGC	1 cut(s)	912
BstV2I	GAAGAC	1 cut(s)	701
BstX2I	RGATCY	1 cut(s)	32
BstYI	RGATCY	1 cut(s)	32
BsuI	GTATCC	1 cut(s)	398
BsuRI	GGCC	1 cut(s)	559
BtsCI	GGATG	3 cut(s)	62, 475, 724
BtsI	GCAGTG	1 cut(s)	483
BtsIMutI	CAGTG	3 cut(s)	324, 483, 927
Cac8I	GCNNGC	5 cut(s)	349, 642, 777, 870, 1019
CfoI	GCGC	1 cut(s)	938
Cfr10I	RCCGGY	1 cut(s)	704
Cfr13I	GGNCC	2 cut(s)	508, 702
CpoI	CGGWCCG	1 cut(s)	702
Csp6I	GTAC	3 cut(s)	102, 448, 1056
CspAI	ACCGGT	1 cut(s)	704
CspI	CGGWCCG	1 cut(s)	702
CviQI	GTAC	3 cut(s)	102, 448, 1056
DdeI	CTNAG	3 cut(s)	29, 756, 919
DpnI	GATC	2 cut(s)	34, 996
DpnII	GATC	2 cut(s)	32, 994
DriI	GACNNNNNGTC	1 cut(s)	922
Eam1104I	CTCTTC	1 cut(s)	1065
Eam1105I	GACNNNNNGTC	1 cut(s)	922
EarI	CTCTTC	1 cut(s)	1065
Eco31I	GGTCTC	1 cut(s)	680
Eco47I	GGWCC	2 cut(s)	508, 702
Eco57I	CTGAAG	1 cut(s)	282
EcoO109I	RGGNCCY	1 cut(s)	508
EcoT22I	ATGCAT	1 cut(s)	217
Esp3I	CGTCTC	1 cut(s)	1071
FaqI	GGGAC	2 cut(s)	521, 674
FauNDI	CATATG	1 cut(s)	747
Fnu4HI	GCNGC	2 cut(s)	25, 901
FokI	GGATG	3 cut(s)	49, 482, 731
Fsp4HI	GCNGC	2 cut(s)	25, 901
FspBI	CTAG	4 cut(s)	501, 776, 944, 1053
GlaI	GCGC	1 cut(s)	937
GluI	GCNGC	2 cut(s)	25, 901
GsuI	CTGGAG	1 cut(s)	1050
HaeIII	GGCC	1 cut(s)	559
HapII	CCGG	1 cut(s)	705
HhaI	GCGC	1 cut(s)	938
Hin6I	GCGC	1 cut(s)	936
HinP1I	GCGC	1 cut(s)	936
HinfI	GANTC	3 cut(s)	697, 917, 1028
HpaII	CCGG	1 cut(s)	705
HphI	GGTGA	1 cut(s)	383
Hpy166II	GTNNAC	3 cut(s)	685, 764, 953
Hpy188I	TCNGA	3 cut(s)	262, 285, 702
Hpy188III	TCNNGA	2 cut(s)	985, 1067
Hpy8I	GTNNAC	3 cut(s)	685, 764, 953
HpyAV	CCTTC	2 cut(s)	498, 549
HpyCH4III	ACNGT	1 cut(s)	328
HpyCH4IV	ACGT	1 cut(s)	143
HpyF10VI	GCNNNNNNNGC	8 cut(s)	24, 68, 146, 221, 338, 869, 944, 1014
HpyF3I	CTNAG	3 cut(s)	29, 756, 919
HpySE526I	ACGT	1 cut(s)	143
HspAI	GCGC	1 cut(s)	936
KpnI	GGTACC	1 cut(s)	105
Kzo9I	GATC	2 cut(s)	32, 994
LmnI	GCTCC	1 cut(s)	772
Lsp1109I	GCAGC	1 cut(s)	912
LweI	GCATC	4 cut(s)	71, 486, 789, 882
MaeI	CTAG	4 cut(s)	501, 776, 944, 1053
MaeII	ACGT	1 cut(s)	143
MaeIII	GTNAC	1 cut(s)	532
MalI	GATC	2 cut(s)	34, 996
MboI	GATC	2 cut(s)	32, 994
MboII	GAAGA	4 cut(s)	386, 475, 701, 1052
MflI	RGATCY	1 cut(s)	32
MluCI	AATT	7 cut(s)	75, 153, 191, 397, 442, 608, 971
MlyI	GAGTC	1 cut(s)	911
MmeI	TCCRAC	2 cut(s)	500, 940
MnlI	CCTC	7 cut(s)	50, 197, 344, 592, 660, 1037, 1074
Mph1103I	ATGCAT	1 cut(s)	217
MslI	CAYNNNNRTG	2 cut(s)	750, 1036
MspA1I	CMGCKG	1 cut(s)	903
MspI	CCGG	1 cut(s)	705
Mva1269I	GAATGC	4 cut(s)	226, 594, 817, 1010
MwoI	GCNNNNNNNGC	8 cut(s)	24, 68, 146, 221, 338, 869, 944, 1014
NdeI	CATATG	1 cut(s)	747
NdeII	GATC	2 cut(s)	32, 994
NheI	GCTAGC	1 cut(s)	775
NlaIV	GGNNCC	2 cut(s)	103, 509
NsiI	ATGCAT	1 cut(s)	217
NspI	RCATGY	4 cut(s)	215, 345, 872, 951
PaeI	GCATGC	1 cut(s)	872
PctI	GAATGC	4 cut(s)	226, 594, 817, 1010
PfeI	GAWTC	2 cut(s)	697, 1028
PflMI	CCANNNNNTGG	1 cut(s)	822
PinAI	ACCGGT	1 cut(s)	704
PkrI	GCNGC	2 cut(s)	26, 902
PleI	GAGTC	1 cut(s)	911
PpsI	GAGTC	1 cut(s)	911
PpuMI	RGGWCCY	1 cut(s)	508
Psp5II	RGGWCCY	1 cut(s)	508
PspN4I	GGNNCC	2 cut(s)	103, 509
PspPI	GGNCC	2 cut(s)	508, 702
PspPPI	RGGWCCY	1 cut(s)	508
PsuI	RGATCY	1 cut(s)	32
RsaI	GTAC	3 cut(s)	103, 449, 1057
RsaNI	GTAC	3 cut(s)	102, 448, 1056
RseI	CAYNNNNRTG	2 cut(s)	750, 1036
Rsr2I	CGGWCCG	1 cut(s)	702
RsrII	CGGWCCG	1 cut(s)	702
SatI	GCNGC	2 cut(s)	25, 901
Sau3AI	GATC	2 cut(s)	32, 994
Sau96I	GGNCC	2 cut(s)	508, 702
ScaI	AGTACT	1 cut(s)	1057
SchI	GAGTC	1 cut(s)	911
SfaNI	GCATC	4 cut(s)	71, 486, 789, 882
SinI	GGWCC	2 cut(s)	508, 702
SmiMI	CAYNNNNRTG	2 cut(s)	750, 1036
SmlI	CTYRAG	2 cut(s)	335, 664
SmoI	CTYRAG	2 cut(s)	335, 664
SphI	GCATGC	1 cut(s)	872
Sse9I	AATT	7 cut(s)	75, 153, 191, 397, 442, 608, 971
SsiI	CCGC	3 cut(s)	25, 402, 903
SspI	AATATT	1 cut(s)	251
SspMI	CTAG	4 cut(s)	501, 776, 944, 1053
TaaI	ACNGT	1 cut(s)	328
TaiI	ACGT	1 cut(s)	146
TaqI	TCGA	2 cut(s)	186, 317
TasI	AATT	7 cut(s)	75, 153, 191, 397, 442, 608, 971
TatI	WGTACW	1 cut(s)	1055
TauI	GCSGC	1 cut(s)	27
TfiI	GAWTC	2 cut(s)	697, 1028
TscAI	CASTG	3 cut(s)	331, 483, 927
TseI	GCWGC	1 cut(s)	900
TspDTI	ATGAA	4 cut(s)	68, 420, 486, 1020
TspGWI	ACGGA	1 cut(s)	1089
TspRI	CASTG	3 cut(s)	331, 483, 927
Van91I	CCANNNNNTGG	1 cut(s)	822
VpaK11BI	GGWCC	2 cut(s)	508, 702
XapI	RAATTY	3 cut(s)	75, 442, 608
XceI	RCATGY	4 cut(s)	215, 345, 872, 951
XspI	CTAG	4 cut(s)	501, 776, 944, 1053
ZrmI	AGTACT	1 cut(s)	1057
Zsp2I	ATGCAT	1 cut(s)	217

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.