Rmu_sc0024251.1_g000001

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0024251.1
Physical Location & Seq
Reverse (-)
2 .. 1648
1647 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0024251.1_g000001.1.cds

Sequence Viewer

Length: 1647 bp
atggggttacttccacggccaaaccgcctcagacctctccttttatcctgcaaacacaaaccctccgtagctcaaatccatgcccttatgatagtcactggtgctatcacccatgcaaactccaactcaccacttatagcctcatatgcaagcattggcgacaccgaaactgcccgcaaagtgttcgacgaaatgcctcaaagaaacatacatgcatggaatgccatgataatcgcatattctcgtcagcattgcccatctgatgctttgagtttgtattctcggatgatatcggagggagttagaccagatagctcgacctttactggtgctctcaaggcatgtgcaggcatgttggacttgaaaatgggtgaggaagtttggtccaaggcggcgcgttgcgggtacgagggtgacgtgtttgtggcgtcttctgttttgaatttgtatgcaaagtgtgggaaaatagatgaagcagtggcggttttcgacaagatgcctagaagggatcttgtttgttgtacgacaatgattacggggtttttgcagagtgggaggccagtggaagcagttgaggtgtataggaggatgcaaaatgagggaatggagtttgatggggttgtgatgatggggttagtgcaggcttgtgcaagtctaggggacttgaggttgggtctttcagttcatgggtatatgattaggagaggtattccaatggatgttatggttcagacaagtcttgtggatatgtatgctaagagtggacatttcgagctagcttcttgtgtattcaataggatgccttacaggaatgccgtttcttggggtgctttgatttctggctttgctcaaaatggttttgcagggcacgcgcttgaaatggtcgtagaaatgcagagttgtggttttgagccagagtcagcgtctcttgtaagctcacttctagcatgttcacaggttggactgttgaaattgggtaaatccattcatggatatattttgaaaaggcttgagattggtcaagtgtgcggtactgcagtcattgacatgtattctaaatgtggttccctttcgtatgcgcgtgctctctttgatcagatggtctccagagacttgatctcatggaatgctatgattgccagctatgggattcatgggtgtggagaggaagctctaacactcttcctccagatgacagagacgaacttaaagcctgatcattcgacttttgcttctcttctatcggctttcagtcactctggtctcgtagaagaaggcctgcattggttcgatgtcatggtcgctaagtacaagatccctccaggggagaaacattatgcttgtatggttgatctgctggctcgttctggacgagttgaagaggctagcgagctaatagcttctatgaacaccgaacctgggcttgctgtctgggttgccctcctggcaggttgccacaatcatcggaaactctccatcggagaaattgcagcaaagaaggtcctcgagttcaatccagatgacttgggagtttatgctttggtctcaaatttttacgccatggcagggagatgggaaggtgtagctggtacaaagaagatcatgaaacagacgggaacgaagaaagtcccaggctacagtctagtg

Protein Analysis

549

Amino Acids

59.87

Weight (kDa)

7.54

Isoelectric Point (pI)

43.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0014018)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1439
AccII CGCG 3 cut(s) 397, 872, 1081
AciI CCGC 6 cut(s) 25, 175, 392, 402, 482, 1029
AclWI GGATC 2 cut(s) 516, 1309
AcoI YGGCCR 1 cut(s) 17
AcsI RAATTY 2 cut(s) 442, 1549
AcyI GRCGYC 1 cut(s) 428
AfaI GTAC 5 cut(s) 407, 523, 1033, 1310, 1591
AfiI CCNNNNNNNGG 5 cut(s) 822, 1146, 1324, 1419, 1566
AflIII ACRYGT 2 cut(s) 417, 1047
AgsI TTSAA 8 cut(s) 364, 442, 793, 878, 970, 1003, 1379, 1513
AjiI CACGTC 1 cut(s) 418
AjnI CCWGG 4 cut(s) 1321, 1417, 1443, 1630
Alw21I GWGCWC 2 cut(s) 334, 1087
Alw26I GTCTC 6 cut(s) 930, 1104, 1108, 1193, 1268, 1549
AlwI GGATC 2 cut(s) 516, 1309
Ama87I CYCGRG 1 cut(s) 1505
AoxI GGCC 3 cut(s) 17, 557, 1276
ApeKI GCWGC 1 cut(s) 1490
ApoI RAATTY 2 cut(s) 442, 1549
AspLEI GCGC 3 cut(s) 397, 874, 1081
AspS9I GGNCC 2 cut(s) 384, 1501
AsuHPI GGTGA 4 cut(s) 100, 120, 383, 425
AsuNHI GCTAGC 2 cut(s) 775, 1385
AvaI CYCGRG 1 cut(s) 1505
AvaII GGWCC 2 cut(s) 384, 1501
BaeGI GKGCMC 1 cut(s) 870
BaeI ACNNNNGTAYC 4 cut(s) 397, 430, 1023, 1056
BarI GAAGNNNNNNTAC 2 cut(s) 924, 956
BbsI GAAGAC 1 cut(s) 423
Bbv12I GWGCWC 2 cut(s) 334, 1087
BbvI GCAGC 1 cut(s) 1502
BccI CCATC 6 cut(s) 265, 608, 622, 1093, 1484, 1566
BceAI ACGGC 2 cut(s) 32, 800
BcgI CGANNNNNNTGC 2 cut(s) 166, 200
BciT130I CCWGG 4 cut(s) 1323, 1419, 1445, 1632
BclI TGATCA 2 cut(s) 1093, 1216
BcoDI GTCTC 6 cut(s) 930, 1104, 1108, 1193, 1268, 1549
BfaI CTAG 6 cut(s) 501, 656, 776, 944, 1386, 1643
BfmI CTRYAG 2 cut(s) 1035, 1636
BfuAI ACCTGC 1 cut(s) 1439
BglI GCCNNNNNGGC 1 cut(s) 1445
BisI GCNGC 2 cut(s) 393, 1491
BlsI GCNGC 2 cut(s) 394, 1492
Bme1390I CCNGG 4 cut(s) 1323, 1419, 1445, 1632
Bme18I GGWCC 2 cut(s) 384, 1501
BmeT110I CYCGRG 1 cut(s) 1505
BmgBI CACGTC 1 cut(s) 418
BmgT120I GGNCC 2 cut(s) 384, 1501
BmiI GGNNCC 1 cut(s) 1066
BmrFI CCNGG 4 cut(s) 1323, 1419, 1445, 1632
BmsI GCATC 4 cut(s) 253, 486, 579, 789
BmtI GCTAGC 2 cut(s) 779, 1389
BpiI GAAGAC 1 cut(s) 423
BpmI CTGGAG 3 cut(s) 1090, 1172, 1305
BpuEI CTTGAG 3 cut(s) 320, 685, 1031
BsaHI GRCGYC 1 cut(s) 428
BsaI GGTCTC 3 cut(s) 1108, 1268, 1549
BsaJI CCNNGG 6 cut(s) 14, 387, 1322, 1418, 1560, 1630
BsaXI ACNNNNNCTCC 4 cut(s) 47, 77, 1170, 1200
Bsc4I CCNNNNNNNGG 5 cut(s) 822, 1146, 1324, 1419, 1566
Bse1I ACTGG 3 cut(s) 103, 331, 560
Bse3DI GCAATG 1 cut(s) 250
BseBI CCWGG 4 cut(s) 1323, 1419, 1445, 1632
BseDI CCNNGG 6 cut(s) 14, 387, 1322, 1418, 1560, 1630
BseGI GGATG 4 cut(s) 291, 594, 724, 804
BseLI CCNNNNNNNGG 5 cut(s) 822, 1146, 1324, 1419, 1566
BseMI GCAATG 1 cut(s) 250
BseMII CTCAG 1 cut(s) 43
BseNI ACTGG 3 cut(s) 103, 331, 560
BseSI GKGCMC 1 cut(s) 870
BseXI GCAGC 1 cut(s) 1502
BsgI GTGCAG 2 cut(s) 366, 659
Bsh1236I CGCG 3 cut(s) 397, 872, 1081
BshFI GGCC 3 cut(s) 19, 559, 1278
BsiHKAI GWGCWC 2 cut(s) 334, 1087
BsiHKCI CYCGRG 1 cut(s) 1505
BslFI GGGAC 2 cut(s) 674, 1613
BslI CCNNNNNNNGG 5 cut(s) 822, 1146, 1324, 1419, 1566
BsmAI GTCTC 6 cut(s) 930, 1104, 1108, 1193, 1268, 1549
BsmBI CGTCTC 2 cut(s) 930, 1193
BsmFI GGGAC 2 cut(s) 674, 1613
BsmI GAATGC 3 cut(s) 226, 817, 1132
BsnI GGCC 3 cut(s) 19, 559, 1278
Bso31I GGTCTC 3 cut(s) 1108, 1268, 1549
BsoBI CYCGRG 1 cut(s) 1505
Bsp1286I GDGCHC 3 cut(s) 334, 870, 1087
Bsp143I GATC 7 cut(s) 508, 1093, 1116, 1216, 1314, 1351, 1599
Bsp19I CCATGG 1 cut(s) 1560
BspACI CCGC 6 cut(s) 25, 175, 392, 402, 482, 1029
BspANI GGCC 3 cut(s) 19, 559, 1278
BspCNI CTCAG 1 cut(s) 42
BspFNI CGCG 3 cut(s) 397, 872, 1081
BspHI TCATGA 1 cut(s) 1602
BspLI GGNNCC 1 cut(s) 1066
BspMAI CTGCAG 1 cut(s) 1039
BspMI ACCTGC 1 cut(s) 1439
BspOI GCTAGC 2 cut(s) 779, 1389
BspPI GGATC 2 cut(s) 516, 1309
BspTNI GGTCTC 3 cut(s) 1108, 1268, 1549
BsrDI GCAATG 1 cut(s) 250
BsrI ACTGG 3 cut(s) 103, 331, 560
BssECI CCNNGG 6 cut(s) 14, 387, 1322, 1418, 1560, 1630
BssMI GATC 7 cut(s) 508, 1093, 1116, 1216, 1314, 1351, 1599
BssNI GRCGYC 1 cut(s) 428
BssT1I CCWWGG 2 cut(s) 387, 1560
Bst2UI CCWGG 4 cut(s) 1323, 1419, 1445, 1632
Bst4CI ACNGT 2 cut(s) 966, 1640
Bst6I CTCTTC 3 cut(s) 1187, 1242, 1374
BstACI GRCGYC 1 cut(s) 428
BstAPI GCANNNNNTGC 1 cut(s) 221
BstDEI CTNAG 3 cut(s) 29, 756, 1305
BstDSI CCRYGG 2 cut(s) 14, 1560
BstF5I GGATG 4 cut(s) 291, 594, 724, 804
BstFNI CGCG 3 cut(s) 397, 872, 1081
BstHHI GCGC 3 cut(s) 397, 874, 1081
BstKTI GATC 7 cut(s) 511, 1096, 1119, 1219, 1317, 1354, 1602
BstMAI GTCTC 6 cut(s) 930, 1104, 1108, 1193, 1268, 1549
BstMBI GATC 7 cut(s) 508, 1093, 1116, 1216, 1314, 1351, 1599
BstMWI GCNNNNNNNGC 6 cut(s) 146, 221, 338, 869, 1136, 1445
BstNI CCWGG 4 cut(s) 1323, 1419, 1445, 1632
BstNSI RCATGY 5 cut(s) 215, 345, 355, 951, 1051
BstSCI CCNGG 4 cut(s) 1321, 1417, 1443, 1630
BstSFI CTRYAG 2 cut(s) 1035, 1636
BstSLI GKGCMC 1 cut(s) 870
BstUI CGCG 3 cut(s) 397, 872, 1081
BstV1I GCAGC 1 cut(s) 1502
BstV2I GAAGAC 1 cut(s) 423
BstX2I RGATCY 2 cut(s) 508, 1314
BstYI RGATCY 2 cut(s) 508, 1314
BsuRI GGCC 3 cut(s) 19, 559, 1278
BtgI CCRYGG 2 cut(s) 14, 1560
BtrI CACGTC 1 cut(s) 418
BtsCI GGATG 4 cut(s) 291, 594, 724, 804
BtsI GCAGTG 1 cut(s) 483
BtsIMutI CAGTG 3 cut(s) 96, 483, 567
BveI ACCTGC 1 cut(s) 1439
CciI TCATGA 1 cut(s) 1602
CfoI GCGC 3 cut(s) 397, 874, 1081
Cfr13I GGNCC 2 cut(s) 384, 1501
CseI GACGC 2 cut(s) 417, 912
Csp6I GTAC 5 cut(s) 406, 522, 1032, 1309, 1590
CspCI CAANNNNNGTGG 2 cut(s) 723, 758
CviQI GTAC 5 cut(s) 406, 522, 1032, 1309, 1590
DdeI CTNAG 3 cut(s) 29, 756, 1305
DpnI GATC 7 cut(s) 510, 1095, 1118, 1218, 1316, 1353, 1601
DpnII GATC 7 cut(s) 508, 1093, 1116, 1216, 1314, 1351, 1599
EaeI YGGCCR 1 cut(s) 17
Eam1104I CTCTTC 3 cut(s) 1187, 1242, 1374
EarI CTCTTC 3 cut(s) 1187, 1242, 1374
Eco130I CCWWGG 2 cut(s) 387, 1560
Eco147I AGGCCT 1 cut(s) 1278
Eco31I GGTCTC 3 cut(s) 1108, 1268, 1549
Eco32I GATATC 1 cut(s) 291
Eco47I GGWCC 2 cut(s) 384, 1501
Eco88I CYCGRG 1 cut(s) 1505
EcoO109I RGGNCCY 1 cut(s) 1501
EcoRII CCWGG 4 cut(s) 1321, 1417, 1443, 1630
EcoRV GATATC 1 cut(s) 291
EcoT14I CCWWGG 2 cut(s) 387, 1560
EcoT22I ATGCAT 1 cut(s) 217
ErhI CCWWGG 2 cut(s) 387, 1560
Esp3I CGTCTC 2 cut(s) 930, 1193
FaqI GGGAC 2 cut(s) 674, 1613
FauI CCCGC 2 cut(s) 182, 395
FauNDI CATATG 1 cut(s) 145
FbaI TGATCA 2 cut(s) 1093, 1216
Fnu4HI GCNGC 2 cut(s) 393, 1491
FokI GGATG 4 cut(s) 298, 601, 731, 811
Fsp4HI GCNGC 2 cut(s) 393, 1491
FspBI CTAG 6 cut(s) 501, 656, 776, 944, 1386, 1643
GlaI GCGC 3 cut(s) 396, 873, 1080
GluI GCNGC 2 cut(s) 393, 1491
GsuI CTGGAG 3 cut(s) 1090, 1172, 1305
HaeIII GGCC 3 cut(s) 19, 559, 1278
HgaI GACGC 2 cut(s) 417, 912
HhaI GCGC 3 cut(s) 397, 874, 1081
Hin1I GRCGYC 1 cut(s) 428
Hin6I GCGC 3 cut(s) 395, 872, 1079
HinP1I GCGC 3 cut(s) 395, 872, 1079
HinfI GANTC 2 cut(s) 917, 1150
HphI GGTGA 4 cut(s) 100, 120, 383, 425
Hpy166II GTNNAC 2 cut(s) 764, 953
Hpy188I TCNGA 8 cut(s) 32, 262, 285, 295, 732, 1098, 1467, 1481
Hpy188III TCNNGA 5 cut(s) 1107, 1189, 1368, 1517, 1603
Hpy8I GTNNAC 2 cut(s) 764, 953
Hpy99I CGWCG 1 cut(s) 191
HpyAV CCTTC 4 cut(s) 498, 1268, 1492, 1571
HpyCH4III ACNGT 2 cut(s) 966, 1640
HpyCH4IV ACGT 1 cut(s) 417
HpyF10VI GCNNNNNNNGC 6 cut(s) 146, 221, 338, 869, 1136, 1445
HpyF3I CTNAG 3 cut(s) 29, 756, 1305
HpySE526I ACGT 1 cut(s) 417
Hsp92I GRCGYC 1 cut(s) 428
HspAI GCGC 3 cut(s) 395, 872, 1079
Ksp22I TGATCA 2 cut(s) 1093, 1216
Kzo9I GATC 7 cut(s) 508, 1093, 1116, 1216, 1314, 1351, 1599
Lsp1109I GCAGC 1 cut(s) 1502
LweI GCATC 4 cut(s) 253, 486, 579, 789
MaeI CTAG 6 cut(s) 501, 656, 776, 944, 1386, 1643
MaeII ACGT 1 cut(s) 417
MaeIII GTNAC 4 cut(s) 6, 94, 413, 1253
MalI GATC 7 cut(s) 510, 1095, 1118, 1218, 1316, 1353, 1601
MboI GATC 7 cut(s) 508, 1093, 1116, 1216, 1314, 1351, 1599
MboII GAAGA 7 cut(s) 423, 1174, 1229, 1283, 1391, 1609, 1633
MflI RGATCY 2 cut(s) 508, 1314
MhlI GDGCHC 3 cut(s) 334, 870, 1087
MluCI AATT 4 cut(s) 442, 971, 1485, 1549
MlyI GAGTC 1 cut(s) 926
MmeI TCCRAC 3 cut(s) 147, 336, 940
Mph1103I ATGCAT 1 cut(s) 217
MseI TTAA 1 cut(s) 1208
MslI CAYNNNNRTG 2 cut(s) 1046, 1158
MspR9I CCNGG 4 cut(s) 1323, 1419, 1445, 1632
Mva1269I GAATGC 3 cut(s) 226, 817, 1132
MvaI CCWGG 4 cut(s) 1323, 1419, 1445, 1632
MvnI CGCG 3 cut(s) 397, 872, 1081
MwoI GCNNNNNNNGC 6 cut(s) 146, 221, 338, 869, 1136, 1445
NcoI CCATGG 1 cut(s) 1560
NdeI CATATG 1 cut(s) 145
NdeII GATC 7 cut(s) 508, 1093, 1116, 1216, 1314, 1351, 1599
NheI GCTAGC 2 cut(s) 775, 1385
NlaIV GGNNCC 1 cut(s) 1066
NmuCI GTSAC 3 cut(s) 94, 413, 1253
NsiI ATGCAT 1 cut(s) 217
NspI RCATGY 5 cut(s) 215, 345, 355, 951, 1051
PaeR7I CTCGAG 1 cut(s) 1505
PagI TCATGA 1 cut(s) 1602
PceI AGGCCT 1 cut(s) 1278
PciI ACATGT 1 cut(s) 1047
PcsI WCGNNNNNNNCGW 2 cut(s) 414, 1369
PctI GAATGC 3 cut(s) 226, 817, 1132
PfeI GAWTC 1 cut(s) 1150
PkrI GCNGC 2 cut(s) 394, 1492
PleI GAGTC 1 cut(s) 925
PpsI GAGTC 1 cut(s) 925
PpuMI RGGWCCY 1 cut(s) 1501
PscI ACATGT 1 cut(s) 1047
Psp5II RGGWCCY 1 cut(s) 1501
Psp6I CCWGG 4 cut(s) 1321, 1417, 1443, 1630
PspGI CCWGG 4 cut(s) 1321, 1417, 1443, 1630
PspN4I GGNNCC 1 cut(s) 1066
PspPI GGNCC 2 cut(s) 384, 1501
PspPPI RGGWCCY 1 cut(s) 1501
PspXI VCTCGAGB 1 cut(s) 1505
PstI CTGCAG 1 cut(s) 1039
PsuI RGATCY 2 cut(s) 508, 1314
RsaI GTAC 5 cut(s) 407, 523, 1033, 1310, 1591
RsaNI GTAC 5 cut(s) 406, 522, 1032, 1309, 1590
RseI CAYNNNNRTG 2 cut(s) 1046, 1158
SaqAI TTAA 1 cut(s) 1208
SatI GCNGC 2 cut(s) 393, 1491
Sau3AI GATC 7 cut(s) 508, 1093, 1116, 1216, 1314, 1351, 1599
Sau96I GGNCC 2 cut(s) 384, 1501
SchI GAGTC 1 cut(s) 926
ScrFI CCNGG 4 cut(s) 1323, 1419, 1445, 1632
SduI GDGCHC 3 cut(s) 334, 870, 1087
SfaNI GCATC 4 cut(s) 253, 486, 579, 789
SfcI CTRYAG 2 cut(s) 1035, 1636
Sfr274I CTCGAG 1 cut(s) 1505
SinI GGWCC 2 cut(s) 384, 1501
SlaI CTCGAG 1 cut(s) 1505
SmiMI CAYNNNNRTG 2 cut(s) 1046, 1158
SmlI CTYRAG 4 cut(s) 335, 664, 1010, 1505
SmoI CTYRAG 4 cut(s) 335, 664, 1010, 1505
Sse9I AATT 4 cut(s) 442, 971, 1485, 1549
SseBI AGGCCT 1 cut(s) 1278
SsiI CCGC 6 cut(s) 25, 175, 392, 402, 482, 1029
SspMI CTAG 6 cut(s) 501, 656, 776, 944, 1386, 1643
StuI AGGCCT 1 cut(s) 1278
StyD4I CCNGG 4 cut(s) 1321, 1417, 1443, 1630
StyI CCWWGG 2 cut(s) 387, 1560
TaaI ACNGT 2 cut(s) 966, 1640
TaiI ACGT 1 cut(s) 420
TaqI TCGA 7 cut(s) 186, 317, 489, 771, 1223, 1290, 1506
TasI AATT 4 cut(s) 442, 971, 1485, 1549
TatI WGTACW 1 cut(s) 1308
TauI GCSGC 1 cut(s) 395
TfiI GAWTC 1 cut(s) 1150
Tru1I TTAA 1 cut(s) 1208
Tru9I TTAA 1 cut(s) 1208
TscAI CASTG 3 cut(s) 103, 483, 567
TseFI GTSAC 3 cut(s) 94, 413, 1253
TseI GCWGC 1 cut(s) 1490
Tsp45I GTSAC 3 cut(s) 94, 413, 1253
TspDTI ATGAA 6 cut(s) 486, 674, 977, 1142, 1421, 1619
TspGWI ACGGA 1 cut(s) 55
TspRI CASTG 3 cut(s) 103, 483, 567
VpaK11BI GGWCC 2 cut(s) 384, 1501
XapI RAATTY 2 cut(s) 442, 1549
XceI RCATGY 5 cut(s) 215, 345, 355, 951, 1051
XhoI CTCGAG 1 cut(s) 1505
XspI CTAG 6 cut(s) 501, 656, 776, 944, 1386, 1643
Zsp2I ATGCAT 1 cut(s) 217
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.