Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0014018

Physical Location & Seq

Genomic Coordinates Reverse (-)

19365105 .. 19366940

Gene Structure 1836 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g15920.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1836 bp

ATGCAGTTACTTCCATGGCCAAACCGCCTCAGAGCTCTCCTCTTATCCTGCACGGATAAGACCTCCATCGCTAAAGTCCATGCTCTTATGATATTGACTAGTACCGTCGCCGATGGAAGCTCCAACGCTCGACTCATAGCGTCCTACGCACGTATTGCGGATACTGTATCCGCCCGCAAAGTGTTCGATAAATTGCCTCAACGAGGCGTGAATGCATGGAATGCCATGATAGTCGCGTATTCTCGGCAAGATTACCCGTCTCAAGTTTTAAGTTTATATCATCAGATGGTAGCGGAAGGAGTTAGACCTGATAGCTCGACTTTTACTGTCGCGATTAAGGCGTGCGCAAGCATGTTGGACTTGGAGATTGGTGAGGAAATTTGGTCTAAGGCGGTGGATTGCGGGTACGAACGTGATGTGTTTGTGGGATCATCTGTTTTGAACTTGTACGCCAAGAGCGGGAAGATGGGTGAAGCAGTGGTGGTGTTTGAGAAGATGCCTAGAAAGGACCTTGTTTGTTGGACAACAATGATATCAGGGTTTGTGCAGAGTGGAATGCCTATGGAAGCGGTTGAGATGTTTAGGGGAATGCAACATGAGGGAATCGAATTTGATGGGGTTTCGATGATGGGGTTGGTACAGGCTTCTGCAATTCTTGGGGACTTGAGATTGAGTCTTTCTGTTCACGGGTTTATGATTCGGAGAGGTCTTCGTATGGATGTTATGGTTCAAACCAGCCTTGCCCATATGTATGCGAAGAACGGGCATTTGGAGCTAGCTTATAGGGTGTTCGATAGGATGCCTTACAAGAATGCCATTTCATGGGGTTCTTTGATTTCCGGCTTTGCTCAAAATGGCTTCGCAGGGCGTGCACTCAAAATGCTAGTAGAGATGCAGGGCAGTGGACTTGAACCCGATTCAGCGTGTCTTGTGAGTGCACTTCTAGCATGTTCACAGGTGGGGTTTTTGAAATGGGGTAAATCCGCACATGCATATATCTTGAAGAGGCTTGATTTTGATGAAGTTTTGGGTACTGCCGTGATTGACATGTATTCGAAATGCGGATCCCTTTCTTACGCTCGTGCTCTCTTCGATCAGATTGTTTCCAGAGACTTAATCTCGTGGAATGCTATGATTGCAAGCTACGGAATTCATGGTCATGCAGAGGAAGCTCTAGCCCTCTTCCTCCAGATGACGGAGACAAACATAAAGCCTGATCATGCTACTTTTGCTTCTCTTCTTTCAGCCTTCAGTCACTCAGGCCTCGTACAAGAAGGCCGGTATTGGTTCGACATTATGGTCAATAAGTACAAAACCACTCCGGGGGAGAAACATTATGCTTGCATGGTTGACCTACTTGCTCGTGCTGGACGAGTGGAAGAGGCTTATGAGCTAATAAATTCTGTGAATACTGGCCTTGCTGTTTGGGTTGCCCTCCTGGCAGGTTGCCACAATCATAGGAAGTTGTCGATTGGAGAGGTCGCGGCAAAGAAGATCCTCGAGTTGAATCCGGATGACTTAGGAGTTTACGCTTTGGTCTCGAACTTCTACGCCATGGCGAGGAAGTGGGATGATGTAGCAGATATGAAGAAGATCATGAAACAAAGACGAACAAAGAAAGTGCCAGGCTATAGCGTTGTGGAAGTGAATGGAGAGCTCCATGCTTTTCTCATGGAAGATAAGACACACCAACATCATGAGGATATCATGCAAATCCTGAATAAGTTGGATCATGACATGAGAGCCATCGGATATGTTCCCAGGAATGAATTTCTGTTGCACAATTCGGAAGACAAACATTCCTTCCAGCAAAGAAAATTTATCGAATTGCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

612

Amino Acids

68.24

Weight (kDa)

7.32

Isoelectric Point (pI)

35.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	70 - 116	2.6e-10	PPR repeat family
PPR_2	PF13041	170 - 208	2.9e-06	PPR repeat family
PPR	PF01535	172 - 202	8.1e-08	PPR repeat
PPR_2	PF13041	371 - 418	1.5e-10	PPR repeat family
PPR	PF01535	373 - 400	6.6e-06	PPR repeat
E_motif	PF20431	486 - 548	1e-16	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014018)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25060
fragaria_vesca	FvH4_2g18670
malus_domestica	MD05G1172600.v1.1
prunus_persica	Prupe.8G200000_v2.0.a1
pyrus_communis	pycom05g15920
rosa_chinensis	RchiOBHm_Chr6g0284231
rosa_laevigata	RLG00000012754
rosa_multiflora	Rmu_sc0002698.1_g000026 Rmu_sc0002698.1_g000027 Rmu_sc0024251.1_g000001
rosa_roxburghii	Rroxscaffold_7G00184760
rosa_rugosa	Rorug06G0162100
rosa_samantha	Rh6AG275000 Rh6BG275500 Rh6CG277200 Rh6DG269900
rosa_wichuraiana	Rw6G023660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1298
Acc16I	TGCGCA	1 cut(s)	346
Acc36I	ACCTGC	1 cut(s)	1433
AccB7I	CCANNNNNTGG	1 cut(s)	822
AccBSI	CCGCTC	1 cut(s)	459
AccII	CGCG	3 cut(s)	236, 332, 1484
AccIII	TCCGGA	1 cut(s)	1510
AclWI	GGATC	5 cut(s)	436, 1059, 1072, 1489, 1737
AcoI	YGGCCR	1 cut(s)	17
AcsI	RAATTY	6 cut(s)	378, 608, 1149, 1399, 1769, 1817
AcuI	CTGAAG	1 cut(s)	1234
AfaI	GTAC	7 cut(s)	103, 407, 449, 639, 1033, 1269, 1310
AfiI	CCNNNNNNNGG	6 cut(s)	203, 459, 822, 1195, 1323, 1560
AflIII	ACRYGT	1 cut(s)	1047
AgsI	TTSAA	6 cut(s)	442, 731, 911, 970, 1003, 1507
AhlI	ACTAGT	1 cut(s)	98
AjnI	CCWGG	3 cut(s)	1437, 1624, 1760
AjuI	GAANNNNNNNTTGG	2 cut(s)	752, 784
AluBI	AGCT	9 cut(s)	35, 120, 315, 775, 779, 1143, 1172, 1393, 1657
AluI	AGCT	9 cut(s)	35, 120, 315, 775, 779, 1143, 1172, 1393, 1657
Alw21I	GWGCWC	5 cut(s)	37, 874, 940, 1087, 1659
Alw26I	GTCTC	4 cut(s)	264, 1104, 1193, 1543
Alw44I	GTGCAC	2 cut(s)	870, 936
AlwI	GGATC	5 cut(s)	436, 1059, 1072, 1489, 1737
Ama87I	CYCGRG	1 cut(s)	1499
Aor13HI	TCCGGA	1 cut(s)	1510
AoxI	GGCC	4 cut(s)	17, 1261, 1276, 1414
ApaLI	GTGCAC	2 cut(s)	870, 936
ApoI	RAATTY	6 cut(s)	378, 608, 1149, 1399, 1769, 1817
AspLEI	GCGC	1 cut(s)	347
AspS9I	GGNCC	1 cut(s)	508
AsuC2I	CCSGG	1 cut(s)	1323
AsuHPI	GGTGA	2 cut(s)	383, 482
AsuII	TTCGAA	1 cut(s)	1055
AsuNHI	GCTAGC	1 cut(s)	775
AvaI	CYCGRG	1 cut(s)	1499
AvaII	GGWCC	1 cut(s)	508
BaeGI	GKGCMC	2 cut(s)	874, 940
BaeI	ACNNNNGTAYC	4 cut(s)	397, 430, 1023, 1056
BalI	TGGCCA	1 cut(s)	19
BamHI	GGATCC	1 cut(s)	1064
BanII	GRGCYC	2 cut(s)	37, 1659
BauI	CACGAG	3 cut(s)	1080, 1120, 1362
BbsI	GAAGAC	2 cut(s)	701, 1797
Bbv12I	GWGCWC	5 cut(s)	37, 874, 940, 1087, 1659
BccI	CCATC	7 cut(s)	74, 107, 280, 460, 608, 622, 1754
BceAI	ACGGC	1 cut(s)	1022
BcgI	CGANNNNNNTGC	2 cut(s)	166, 200
BciT130I	CCWGG	3 cut(s)	1439, 1626, 1762
BciVI	GTATCC	2 cut(s)	154, 178
BclI	TGATCA	1 cut(s)	1216
BcnI	CCSGG	1 cut(s)	1323
BcoDI	GTCTC	4 cut(s)	264, 1104, 1193, 1543
BcuI	ACTAGT	1 cut(s)	98
BfaI	CTAG	6 cut(s)	99, 501, 776, 884, 944, 1175
BfmI	CTRYAG	1 cut(s)	1630
BfuAI	ACCTGC	1 cut(s)	1433
BfuI	GTATCC	2 cut(s)	154, 178
BglI	GCCNNNNNGGC	1 cut(s)	1439
BisI	GCNGC	1 cut(s)	1485
BlsI	GCNGC	1 cut(s)	1486
Bme1390I	CCNGG	4 cut(s)	1323, 1439, 1626, 1762
Bme18I	GGWCC	1 cut(s)	508
BmeT110I	CYCGRG	1 cut(s)	1499
BmgT120I	GGNCC	1 cut(s)	508
BmiI	GGNNCC	1 cut(s)	1066
BmrFI	CCNGG	4 cut(s)	1323, 1439, 1626, 1762
BmsI	GCATC	3 cut(s)	486, 789, 882
BmtI	GCTAGC	1 cut(s)	779
BpiI	GAAGAC	2 cut(s)	701, 1797
BplI	GAGNNNNNCTC	2 cut(s)	24, 56
BpmI	CTGGAG	1 cut(s)	1172
Bpu14I	TTCGAA	1 cut(s)	1055
BpuEI	CTTGAG	2 cut(s)	246, 685
BpuMI	CCSGG	1 cut(s)	1323
BsaAI	YACGTR	1 cut(s)	152
BsaI	GGTCTC	1 cut(s)	1543
BsaJI	CCNNGG	4 cut(s)	14, 1322, 1554, 1760
BsaWI	WCCGGW	1 cut(s)	1510
Bsc4I	CCNNNNNNNGG	6 cut(s)	203, 459, 822, 1195, 1323, 1560
Bse118I	RCCGGY	1 cut(s)	1278
Bse1I	ACTGG	1 cut(s)	1417
BseAI	TCCGGA	1 cut(s)	1510
BseBI	CCWGG	3 cut(s)	1439, 1626, 1762
BseDI	CCNNGG	4 cut(s)	14, 1322, 1554, 1760
BseGI	GGATG	4 cut(s)	724, 804, 1519, 1576
BseLI	CCNNNNNNNGG	6 cut(s)	203, 459, 822, 1195, 1323, 1560
BseMII	CTCAG	2 cut(s)	43, 1272
BseNI	ACTGG	1 cut(s)	1417
BseRI	GAGGAG	1 cut(s)	29
BseSI	GKGCMC	2 cut(s)	874, 940
BsgI	GTGCAG	2 cut(s)	34, 566
Bsh1236I	CGCG	3 cut(s)	236, 332, 1484
BshFI	GGCC	4 cut(s)	19, 1263, 1278, 1416
BsiHKAI	GWGCWC	5 cut(s)	37, 874, 940, 1087, 1659
BsiHKCI	CYCGRG	1 cut(s)	1499
BsiSI	CCGG	4 cut(s)	840, 1279, 1322, 1511
BslFI	GGGAC	1 cut(s)	674
BslI	CCNNNNNNNGG	6 cut(s)	203, 459, 822, 1195, 1323, 1560
BsmAI	GTCTC	4 cut(s)	264, 1104, 1193, 1543
BsmBI	CGTCTC	1 cut(s)	264
BsmFI	GGGAC	1 cut(s)	674
BsmI	GAATGC	6 cut(s)	217, 226, 561, 594, 817, 1132
BsnI	GGCC	4 cut(s)	19, 1263, 1278, 1416
Bso31I	GGTCTC	1 cut(s)	1543
BsoBI	CYCGRG	1 cut(s)	1499
Bsp119I	TTCGAA	1 cut(s)	1055
Bsp1286I	GDGCHC	5 cut(s)	37, 874, 940, 1087, 1659
Bsp13I	TCCGGA	1 cut(s)	1510
Bsp143I	GATC	7 cut(s)	428, 1064, 1093, 1216, 1494, 1593, 1729
Bsp19I	CCATGG	2 cut(s)	14, 1554
Bsp68I	TCGCGA	1 cut(s)	332
BspANI	GGCC	4 cut(s)	19, 1263, 1278, 1416
BspCNI	CTCAG	2 cut(s)	42, 1271
BspEI	TCCGGA	1 cut(s)	1510
BspFNI	CGCG	3 cut(s)	236, 332, 1484
BspHI	TCATGA	3 cut(s)	1596, 1696, 1732
BspLI	GGNNCC	1 cut(s)	1066
BspMI	ACCTGC	1 cut(s)	1433
BspOI	GCTAGC	1 cut(s)	779
BspPI	GGATC	5 cut(s)	436, 1059, 1072, 1489, 1737
BspT104I	TTCGAA	1 cut(s)	1055
BspTNI	GGTCTC	1 cut(s)	1543
BsrBI	CCGCTC	1 cut(s)	459
BsrFI	RCCGGY	1 cut(s)	1278
BsrI	ACTGG	1 cut(s)	1417
BssAI	RCCGGY	1 cut(s)	1278
BssECI	CCNNGG	4 cut(s)	14, 1322, 1554, 1760
BssMI	GATC	7 cut(s)	428, 1064, 1093, 1216, 1494, 1593, 1729
BssSI	CACGAG	3 cut(s)	1080, 1120, 1362
BssT1I	CCWWGG	2 cut(s)	14, 1554
Bst2BI	CACGAG	3 cut(s)	1080, 1120, 1362
Bst2UI	CCWGG	3 cut(s)	1439, 1626, 1762
Bst4CI	ACNGT	3 cut(s)	106, 166, 328
Bst6I	CTCTTC	5 cut(s)	998, 1094, 1187, 1242, 1374
BstAPI	GCANNNNNTGC	3 cut(s)	155, 221, 869
BstBAI	YACGTR	1 cut(s)	152
BstBI	TTCGAA	1 cut(s)	1055
BstC8I	GCNNGC	7 cut(s)	175, 343, 349, 777, 870, 1141, 1342
BstDEI	CTNAG	4 cut(s)	29, 387, 1258, 1519
BstDSI	CCRYGG	2 cut(s)	14, 1554
BstENI	CCTNNNNNAGG	1 cut(s)	201
BstF5I	GGATG	4 cut(s)	724, 804, 1519, 1576
BstFNI	CGCG	3 cut(s)	236, 332, 1484
BstHHI	GCGC	1 cut(s)	347
BstKTI	GATC	7 cut(s)	431, 1067, 1096, 1219, 1497, 1596, 1732
BstMAI	GTCTC	4 cut(s)	264, 1104, 1193, 1543
BstMBI	GATC	7 cut(s)	428, 1064, 1093, 1216, 1494, 1593, 1729
BstNI	CCWGG	3 cut(s)	1439, 1626, 1762
BstNSI	RCATGY	4 cut(s)	355, 951, 992, 1051
BstSCI	CCNGG	4 cut(s)	1321, 1437, 1624, 1760
BstSFI	CTRYAG	1 cut(s)	1630
BstSLI	GKGCMC	2 cut(s)	874, 940
BstUI	CGCG	3 cut(s)	236, 332, 1484
BstV2I	GAAGAC	2 cut(s)	701, 1797
BstX2I	RGATCY	2 cut(s)	1064, 1494
BstYI	RGATCY	2 cut(s)	1064, 1494
BsuI	GTATCC	2 cut(s)	154, 178
BsuRI	GGCC	4 cut(s)	19, 1263, 1278, 1416
BtgI	CCRYGG	2 cut(s)	14, 1554
BtgZI	GCGATG	1 cut(s)	52
BtsCI	GGATG	4 cut(s)	724, 804, 1519, 1576
BtsI	GCAGTG	2 cut(s)	483, 907
BtsIMutI	CAGTG	2 cut(s)	483, 907
BtuMI	TCGCGA	1 cut(s)	332
BveI	ACCTGC	1 cut(s)	1433
Cac8I	GCNNGC	7 cut(s)	175, 343, 349, 777, 870, 1141, 1342
CciI	TCATGA	3 cut(s)	1596, 1696, 1732
CfoI	GCGC	1 cut(s)	347
Cfr10I	RCCGGY	1 cut(s)	1278
Cfr13I	GGNCC	1 cut(s)	508
CseI	GACGC	1 cut(s)	129
Csp6I	GTAC	7 cut(s)	102, 406, 448, 638, 1032, 1268, 1309
CviQI	GTAC	7 cut(s)	102, 406, 448, 638, 1032, 1268, 1309
DdeI	CTNAG	4 cut(s)	29, 387, 1258, 1519
DpnI	GATC	7 cut(s)	430, 1066, 1095, 1218, 1496, 1595, 1731
DpnII	GATC	7 cut(s)	428, 1064, 1093, 1216, 1494, 1593, 1729
DrdI	GACNNNNNNGTC	1 cut(s)	1298
DseDI	GACNNNNNNGTC	1 cut(s)	1298
EaeI	YGGCCR	1 cut(s)	17
Eam1104I	CTCTTC	5 cut(s)	998, 1094, 1187, 1242, 1374
EarI	CTCTTC	5 cut(s)	998, 1094, 1187, 1242, 1374
EciI	GGCGGA	1 cut(s)	160
Ecl136II	GAGCTC	2 cut(s)	35, 1657
Eco130I	CCWWGG	2 cut(s)	14, 1554
Eco147I	AGGCCT	1 cut(s)	1263
Eco24I	GRGCYC	2 cut(s)	37, 1659
Eco31I	GGTCTC	1 cut(s)	1543
Eco32I	GATATC	2 cut(s)	534, 1705
Eco47I	GGWCC	1 cut(s)	508
Eco53kI	GAGCTC	2 cut(s)	35, 1657
Eco57I	CTGAAG	1 cut(s)	1234
Eco88I	CYCGRG	1 cut(s)	1499
EcoICRI	GAGCTC	2 cut(s)	35, 1657
EcoNI	CCTNNNNNAGG	1 cut(s)	201
EcoO109I	RGGNCCY	1 cut(s)	508
EcoRI	GAATTC	1 cut(s)	1149
EcoRII	CCWGG	3 cut(s)	1437, 1624, 1760
EcoRV	GATATC	2 cut(s)	534, 1705
EcoT14I	CCWWGG	2 cut(s)	14, 1554
EcoT22I	ATGCAT	2 cut(s)	217, 994
EcoT38I	GRGCYC	2 cut(s)	37, 1659
ErhI	CCWWGG	2 cut(s)	14, 1554
Esp3I	CGTCTC	1 cut(s)	264
FaqI	GGGAC	1 cut(s)	674
FauI	CCCGC	3 cut(s)	182, 395, 452
FauNDI	CATATG	1 cut(s)	747
FbaI	TGATCA	1 cut(s)	1216
Fnu4HI	GCNGC	1 cut(s)	1485
FokI	GGATG	4 cut(s)	731, 811, 1526, 1583
FriOI	GRGCYC	2 cut(s)	37, 1659
Fsp4HI	GCNGC	1 cut(s)	1485
FspBI	CTAG	6 cut(s)	99, 501, 776, 884, 944, 1175
FspI	TGCGCA	1 cut(s)	346
GlaI	GCGC	1 cut(s)	346
GluI	GCNGC	1 cut(s)	1485
GsuI	CTGGAG	1 cut(s)	1172
HaeIII	GGCC	4 cut(s)	19, 1263, 1278, 1416
HapII	CCGG	4 cut(s)	840, 1279, 1322, 1511
HgaI	GACGC	1 cut(s)	129
HhaI	GCGC	1 cut(s)	347
Hin6I	GCGC	1 cut(s)	345
HinP1I	GCGC	1 cut(s)	345
HincII	GTYRAC	1 cut(s)	1351
HindII	GTYRAC	1 cut(s)	1351
HinfI	GANTC	6 cut(s)	132, 603, 673, 697, 917, 1507
HpaII	CCGG	4 cut(s)	840, 1279, 1322, 1511
HphI	GGTGA	2 cut(s)	383, 482
Hpy166II	GTNNAC	7 cut(s)	685, 872, 905, 938, 953, 1351, 1528
Hpy188I	TCNGA	6 cut(s)	32, 285, 702, 1098, 1751, 1789
Hpy8I	GTNNAC	7 cut(s)	685, 872, 905, 938, 953, 1351, 1528
Hpy99I	CGWCG	1 cut(s)	110
HpyAV	CCTTC	4 cut(s)	290, 1258, 1268, 1813
HpyCH4III	ACNGT	3 cut(s)	106, 166, 328
HpyCH4IV	ACGT	2 cut(s)	151, 412
HpyF3I	CTNAG	4 cut(s)	29, 387, 1258, 1519
HpySE526I	ACGT	2 cut(s)	151, 412
HspAI	GCGC	1 cut(s)	345
Kpn2I	TCCGGA	1 cut(s)	1510
Ksp22I	TGATCA	1 cut(s)	1216
Kzo9I	GATC	7 cut(s)	428, 1064, 1093, 1216, 1494, 1593, 1729
LmnI	GCTCC	3 cut(s)	125, 772, 1662
LweI	GCATC	3 cut(s)	486, 789, 882
MaeI	CTAG	6 cut(s)	99, 501, 776, 884, 944, 1175
MaeII	ACGT	2 cut(s)	151, 412
MaeIII	GTNAC	2 cut(s)	6, 1253
MalI	GATC	7 cut(s)	430, 1066, 1095, 1218, 1496, 1595, 1731
MbiI	CCGCTC	1 cut(s)	459
MboI	GATC	7 cut(s)	428, 1064, 1093, 1216, 1494, 1593, 1729
MflI	RGATCY	2 cut(s)	1064, 1494
MhlI	GDGCHC	5 cut(s)	37, 874, 940, 1087, 1659
MlsI	TGGCCA	1 cut(s)	19
MluNI	TGGCCA	1 cut(s)	19
MlyI	GAGTC	2 cut(s)	126, 682
MmeI	TCCRAC	4 cut(s)	147, 336, 500, 1707
Mox20I	TGGCCA	1 cut(s)	19
Mph1103I	ATGCAT	2 cut(s)	217, 994
MroI	TCCGGA	1 cut(s)	1510
MscI	TGGCCA	1 cut(s)	19
MseI	TTAA	3 cut(s)	269, 336, 1115
MslI	CAYNNNNRTG	2 cut(s)	750, 1158
Msp20I	TGGCCA	1 cut(s)	19
MspI	CCGG	4 cut(s)	840, 1279, 1322, 1511
MspR9I	CCNGG	4 cut(s)	1323, 1439, 1626, 1762
Mva1269I	GAATGC	6 cut(s)	217, 226, 561, 594, 817, 1132
MvaI	CCWGG	3 cut(s)	1439, 1626, 1762
MvnI	CGCG	3 cut(s)	236, 332, 1484
NciI	CCSGG	1 cut(s)	1323
NcoI	CCATGG	2 cut(s)	14, 1554
NdeI	CATATG	1 cut(s)	747
NdeII	GATC	7 cut(s)	428, 1064, 1093, 1216, 1494, 1593, 1729
NheI	GCTAGC	1 cut(s)	775
NlaIV	GGNNCC	1 cut(s)	1066
NmeAIII	GCCGAG	1 cut(s)	223
NmuCI	GTSAC	1 cut(s)	1253
NruI	TCGCGA	1 cut(s)	332
NsbI	TGCGCA	1 cut(s)	346
NsiI	ATGCAT	2 cut(s)	217, 994
NspI	RCATGY	4 cut(s)	355, 951, 992, 1051
NspV	TTCGAA	1 cut(s)	1055
PaeR7I	CTCGAG	1 cut(s)	1499
PagI	TCATGA	3 cut(s)	1596, 1696, 1732
PceI	AGGCCT	1 cut(s)	1263
PciI	ACATGT	1 cut(s)	1047
PcsI	WCGNNNNNNNCGW	1 cut(s)	1369
PctI	GAATGC	6 cut(s)	217, 226, 561, 594, 817, 1132
PfeI	GAWTC	4 cut(s)	603, 697, 917, 1507
PflMI	CCANNNNNTGG	1 cut(s)	822
PkrI	GCNGC	1 cut(s)	1486
PleI	GAGTC	2 cut(s)	126, 681
PpsI	GAGTC	2 cut(s)	126, 681
Ppu21I	YACGTR	1 cut(s)	152
PpuMI	RGGWCCY	1 cut(s)	508
PscI	ACATGT	1 cut(s)	1047
Psp124BI	GAGCTC	2 cut(s)	37, 1659
Psp5II	RGGWCCY	1 cut(s)	508
Psp6I	CCWGG	3 cut(s)	1437, 1624, 1760
PspGI	CCWGG	3 cut(s)	1437, 1624, 1760
PspN4I	GGNNCC	1 cut(s)	1066
PspPI	GGNCC	1 cut(s)	508
PspPPI	RGGWCCY	1 cut(s)	508
PspXI	VCTCGAGB	1 cut(s)	1499
PsuI	RGATCY	2 cut(s)	1064, 1494
RruI	TCGCGA	1 cut(s)	332
RsaI	GTAC	7 cut(s)	103, 407, 449, 639, 1033, 1269, 1310
RsaNI	GTAC	7 cut(s)	102, 406, 448, 638, 1032, 1268, 1309
RseI	CAYNNNNRTG	2 cut(s)	750, 1158
SacI	GAGCTC	2 cut(s)	37, 1659
SaqAI	TTAA	3 cut(s)	269, 336, 1115
SatI	GCNGC	1 cut(s)	1485
Sau3AI	GATC	7 cut(s)	428, 1064, 1093, 1216, 1494, 1593, 1729
Sau96I	GGNCC	1 cut(s)	508
SchI	GAGTC	2 cut(s)	126, 682
ScrFI	CCNGG	4 cut(s)	1323, 1439, 1626, 1762
SduI	GDGCHC	5 cut(s)	37, 874, 940, 1087, 1659
SfaNI	GCATC	3 cut(s)	486, 789, 882
SfcI	CTRYAG	1 cut(s)	1630
Sfr274I	CTCGAG	1 cut(s)	1499
SfuI	TTCGAA	1 cut(s)	1055
SinI	GGWCC	1 cut(s)	508
SlaI	CTCGAG	1 cut(s)	1499
SmiMI	CAYNNNNRTG	2 cut(s)	750, 1158
SmlI	CTYRAG	3 cut(s)	261, 664, 1499
SmoI	CTYRAG	3 cut(s)	261, 664, 1499
SpeI	ACTAGT	1 cut(s)	98
SseBI	AGGCCT	1 cut(s)	1263
SspMI	CTAG	6 cut(s)	99, 501, 776, 884, 944, 1175
SstI	GAGCTC	2 cut(s)	37, 1659
StuI	AGGCCT	1 cut(s)	1263
StyD4I	CCNGG	4 cut(s)	1321, 1437, 1624, 1760
StyI	CCWWGG	2 cut(s)	14, 1554
TaaI	ACNGT	3 cut(s)	106, 166, 328
TaiI	ACGT	2 cut(s)	154, 415
TatI	WGTACW	1 cut(s)	1308
TauI	GCSGC	1 cut(s)	1487
TfiI	GAWTC	4 cut(s)	603, 697, 917, 1507
Tru1I	TTAA	3 cut(s)	269, 336, 1115
Tru9I	TTAA	3 cut(s)	269, 336, 1115
TscAI	CASTG	2 cut(s)	483, 907
TseFI	GTSAC	1 cut(s)	1253
Tsp45I	GTSAC	1 cut(s)	1253
TspDTI	ATGAA	6 cut(s)	810, 1035, 1142, 1601, 1613, 1782
TspGWI	ACGGA	3 cut(s)	68, 1161, 1211
TspRI	CASTG	2 cut(s)	483, 907
Van91I	CCANNNNNTGG	1 cut(s)	822
VneI	GTGCAC	2 cut(s)	870, 936
VpaK11BI	GGWCC	1 cut(s)	508
XagI	CCTNNNNNAGG	1 cut(s)	201
XapI	RAATTY	6 cut(s)	378, 608, 1149, 1399, 1769, 1817
XceI	RCATGY	4 cut(s)	355, 951, 992, 1051
XhoI	CTCGAG	1 cut(s)	1499
XspI	CTAG	6 cut(s)	99, 501, 776, 884, 944, 1175
Zsp2I	ATGCAT	2 cut(s)	217, 994

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.