pycom01g03560

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0017936
Physical Location & Seq
Forward (+)
2694315 .. 2694653
339 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 339 bp
ATGGTGAAATCACAATCTTTGCGAAATACTGATCATCCTGAGAAGGCGTTGACGGAGTCAGACTTGGCCGCTGTACAGCAGCTGATGCAGCTTAGTGAAGAAGATAACACCAATAGCAGAAGCAGCGGCCACAACAAGAACAAGAAATTTCAGCAGGATGGCGATGAGGTGGTTGATCAAATCAAAGTGATCACTTGGGAAAAGATTGAAGAGATTTTTGGGAAAGAAGATATCGATCGGCCTAAGAAGCGGAGGTACCGGTCTCTTGCTGATATTTATTTGACCATGAAACCAGTGAATGCAAGATCATATGGGAAGAAGGTGAGGGCAACTTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

113

Amino Acids

13.0

Weight (kDa)

9.15

Isoelectric Point (pI)

62.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017936)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G09876
fragaria_vesca FvH4_1g23900
prunus_persica Prupe.6G161200_v2.0.a1
pyrus_communis pycom01g03560
rosa_laevigata RLG00000018498
rosa_roxburghii Rroxscaffold_2G00124000
rosa_rugosa Rorug02G0224600
rosa_samantha Rh2AG282200 Rh2BG293500 Rh2DG288400 Rh2DG307500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 255
AccB1I GGYRCC 1 cut(s) 255
AciI CCGC 3 cut(s) 69, 126, 250
AcoI YGGCCR 2 cut(s) 66, 127
AcsI RAATTY 1 cut(s) 146
AfaI GTAC 2 cut(s) 75, 257
AgeI ACCGGT 1 cut(s) 258
AgsI TTSAA 1 cut(s) 209
AjuI GAANNNNNNNTTGG 2 cut(s) 201, 233
AluBI AGCT 2 cut(s) 82, 91
AluI AGCT 2 cut(s) 82, 91
Alw26I GTCTC 1 cut(s) 267
AlwNI CAGNNNCTG 1 cut(s) 82
AoxI GGCC 3 cut(s) 66, 127, 239
ApeKI GCWGC 3 cut(s) 79, 88, 123
ApoI RAATTY 1 cut(s) 146
AsiGI ACCGGT 1 cut(s) 258
Asp718I GGTACC 1 cut(s) 255
AsuHPI GGTGA 2 cut(s) 16, 334
BanI GGYRCC 1 cut(s) 255
BarI GAAGNNNNNNTAC 2 cut(s) 239, 271
BbvI GCAGC 3 cut(s) 91, 100, 135
BccI CCATC 1 cut(s) 152
BclI TGATCA 3 cut(s) 31, 175, 189
BcoDI GTCTC 1 cut(s) 267
BisI GCNGC 5 cut(s) 69, 80, 89, 124, 127
BlsI GCNGC 5 cut(s) 70, 81, 90, 125, 128
BmiI GGNNCC 1 cut(s) 257
BmsI GCATC 1 cut(s) 75
Bsa29I ATCGAT 1 cut(s) 234
BsaBI GATNNNNATC 1 cut(s) 234
BsaI GGTCTC 1 cut(s) 267
BsaWI WCCGGW 1 cut(s) 258
Bse118I RCCGGY 1 cut(s) 258
Bse1I ACTGG 1 cut(s) 293
Bse8I GATNNNNATC 1 cut(s) 234
BseCI ATCGAT 1 cut(s) 234
BseGI GGATG 2 cut(s) 34, 163
BseJI GATNNNNATC 1 cut(s) 234
BseMII CTCAG 1 cut(s) 30
BseNI ACTGG 1 cut(s) 293
BseXI GCAGC 3 cut(s) 91, 100, 135
Bsh1285I CGRYCG 1 cut(s) 238
BshFI GGCC 3 cut(s) 68, 129, 241
BshNI GGYRCC 1 cut(s) 255
BshTI ACCGGT 1 cut(s) 258
BshVI ATCGAT 1 cut(s) 234
BsiEI CGRYCG 1 cut(s) 238
BsiSI CCGG 1 cut(s) 259
BsmAI GTCTC 1 cut(s) 267
BsmI GAATGC 1 cut(s) 304
BsnI GGCC 3 cut(s) 68, 129, 241
Bso31I GGTCTC 1 cut(s) 267
Bsp1407I TGTACA 1 cut(s) 73
Bsp143I GATC 5 cut(s) 31, 175, 189, 235, 305
BspACI CCGC 3 cut(s) 69, 126, 250
BspANI GGCC 3 cut(s) 68, 129, 241
BspCNI CTCAG 1 cut(s) 31
BspDI ATCGAT 1 cut(s) 234
BspLI GGNNCC 1 cut(s) 257
BspT107I GGYRCC 1 cut(s) 255
BspTNI GGTCTC 1 cut(s) 267
BsrFI RCCGGY 1 cut(s) 258
BsrGI TGTACA 1 cut(s) 73
BsrI ACTGG 1 cut(s) 293
BssAI RCCGGY 1 cut(s) 258
BssMI GATC 5 cut(s) 31, 175, 189, 235, 305
Bst6I CTCTTC 1 cut(s) 204
BstAPI GCANNNNNTGC 1 cut(s) 85
BstAUI TGTACA 1 cut(s) 73
BstDEI CTNAG 3 cut(s) 39, 92, 243
BstF5I GGATG 2 cut(s) 34, 163
BstKTI GATC 5 cut(s) 34, 178, 192, 238, 308
BstMAI GTCTC 1 cut(s) 267
BstMBI GATC 5 cut(s) 31, 175, 189, 235, 305
BstMCI CGRYCG 1 cut(s) 238
BstMWI GCNNNNNNNGC 4 cut(s) 85, 88, 123, 247
BstV1I GCAGC 3 cut(s) 91, 100, 135
Bsu15I ATCGAT 1 cut(s) 234
BsuRI GGCC 3 cut(s) 68, 129, 241
BsuTUI ATCGAT 1 cut(s) 234
BtgZI GCGATG 1 cut(s) 177
BtsCI GGATG 2 cut(s) 34, 163
BtsIMutI CAGTG 1 cut(s) 300
CaiI CAGNNNCTG 1 cut(s) 82
Cfr10I RCCGGY 1 cut(s) 258
ClaI ATCGAT 1 cut(s) 234
Csp6I GTAC 2 cut(s) 74, 256
CspAI ACCGGT 1 cut(s) 258
CviAII CATG 1 cut(s) 286
CviJI RGCY 5 cut(s) 68, 82, 91, 129, 241
CviKI_1 RGCY 5 cut(s) 68, 82, 91, 129, 241
CviQI GTAC 2 cut(s) 74, 256
DdeI CTNAG 3 cut(s) 39, 92, 243
DpnI GATC 5 cut(s) 33, 177, 191, 237, 307
DpnII GATC 5 cut(s) 31, 175, 189, 235, 305
EaeI YGGCCR 2 cut(s) 66, 127
Eam1104I CTCTTC 1 cut(s) 204
EarI CTCTTC 1 cut(s) 204
Eco31I GGTCTC 1 cut(s) 267
Eco32I GATATC 1 cut(s) 232
EcoRV GATATC 1 cut(s) 232
FaeI CATG 1 cut(s) 289
FaiI YATR 3 cut(s) 287, 310, 312
FatI CATG 1 cut(s) 285
FauNDI CATATG 1 cut(s) 310
FbaI TGATCA 3 cut(s) 31, 175, 189
Fnu4HI GCNGC 5 cut(s) 69, 80, 89, 124, 127
FokI GGATG 2 cut(s) 21, 170
Fsp4HI GCNGC 5 cut(s) 69, 80, 89, 124, 127
GluI GCNGC 5 cut(s) 69, 80, 89, 124, 127
HaeIII GGCC 3 cut(s) 68, 129, 241
HapII CCGG 1 cut(s) 259
Hin1II CATG 1 cut(s) 289
HincII GTYRAC 1 cut(s) 51
HindII GTYRAC 1 cut(s) 51
HinfI GANTC 1 cut(s) 56
HpaII CCGG 1 cut(s) 259
HphI GGTGA 2 cut(s) 16, 334
Hpy166II GTNNAC 1 cut(s) 51
Hpy188I TCNGA 1 cut(s) 61
Hpy188III TCNNGA 1 cut(s) 38
Hpy8I GTNNAC 1 cut(s) 51
HpyAV CCTTC 2 cut(s) 37, 313
HpyCH4V TGCA 2 cut(s) 88, 302
HpyF10VI GCNNNNNNNGC 4 cut(s) 85, 88, 123, 247
HpyF3I CTNAG 3 cut(s) 39, 92, 243
Hsp92II CATG 1 cut(s) 289
KpnI GGTACC 1 cut(s) 259
Ksp22I TGATCA 3 cut(s) 31, 175, 189
Kzo9I GATC 5 cut(s) 31, 175, 189, 235, 305
LpnPI CCDG 4 cut(s) 51, 140, 272, 306
Lsp1109I GCAGC 3 cut(s) 91, 100, 135
LweI GCATC 1 cut(s) 75
MalI GATC 5 cut(s) 33, 177, 191, 237, 307
MboI GATC 5 cut(s) 31, 175, 189, 235, 305
MboII GAAGA 5 cut(s) 110, 113, 221, 239, 328
MluCI AATT 1 cut(s) 146
MlyI GAGTC 1 cut(s) 65
MnlI CCTC 3 cut(s) 160, 246, 318
MspA1I CMGCKG 3 cut(s) 71, 82, 126
MspI CCGG 1 cut(s) 259
Mva1269I GAATGC 1 cut(s) 304
MwoI GCNNNNNNNGC 4 cut(s) 85, 88, 123, 247
NdeI CATATG 1 cut(s) 310
NdeII GATC 5 cut(s) 31, 175, 189, 235, 305
NlaIII CATG 1 cut(s) 289
NlaIV GGNNCC 1 cut(s) 257
PctI GAATGC 1 cut(s) 304
PflFI GACNNNGTC 1 cut(s) 55
PinAI ACCGGT 1 cut(s) 258
PkrI GCNGC 5 cut(s) 70, 81, 90, 125, 128
Ple19I CGATCG 1 cut(s) 238
PleI GAGTC 1 cut(s) 64
PpsI GAGTC 1 cut(s) 64
PspN4I GGNNCC 1 cut(s) 257
PstNI CAGNNNCTG 1 cut(s) 82
PsyI GACNNNGTC 1 cut(s) 55
PvuI CGATCG 1 cut(s) 238
PvuII CAGCTG 1 cut(s) 82
RsaI GTAC 2 cut(s) 75, 257
RsaNI GTAC 2 cut(s) 74, 256
SatI GCNGC 5 cut(s) 69, 80, 89, 124, 127
Sau3AI GATC 5 cut(s) 31, 175, 189, 235, 305
SchI GAGTC 1 cut(s) 65
SetI ASST 5 cut(s) 84, 93, 171, 257, 324
SfaNI GCATC 1 cut(s) 75
Sse9I AATT 1 cut(s) 146
SsiI CCGC 3 cut(s) 69, 126, 250
TaqI TCGA 1 cut(s) 234
TasI AATT 1 cut(s) 146
TatI WGTACW 1 cut(s) 73
TauI GCSGC 2 cut(s) 71, 129
TscAI CASTG 1 cut(s) 300
TseI GCWGC 3 cut(s) 79, 88, 123
TspDTI ATGAA 1 cut(s) 302
TspGWI ACGGA 1 cut(s) 68
TspRI CASTG 1 cut(s) 300
Tth111I GACNNNGTC 1 cut(s) 55
XapI RAATTY 1 cut(s) 146
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.