pycom01g11380
ERF Family

Belongs to the class I-like SAM-binding methyltransferase superfamily. Cation-independent O- methyltransferase family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
Physical Location & Seq
Forward (+)
12349129 .. 12349563
435 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g11380.2

Sequence Viewer

Length: 339 bp
ATGTTTGTAAGTGTTCCATCTGGGGATGCCATTTTTATGAAGTGGATACTTCATGATTGGAGTGACCAACATTGCCTAAAGCTGTTGAAAAATTGTTACAATGCTATTCCAGACGATGGGAAAGTGATTATCGTGGAAGCACTTCTTCCAGTGATGCTAGAGACTAGCACCGCCGTGAAGAGCACCTCCCAAATTGATGTGCTTATGATGACTCAAAACCGAGGAGGAAAGGAGCGGAGCCGAGAAGAGTTCATGGCTTTGGCAACTGGTGCAGGATTTAGTGGCATTAAATATGAATGTTTTGTCTGTAATTTTTGGGTGATGGAGATCTTTAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

113

Amino Acids

12.67

Weight (kDa)

5.6

Isoelectric Point (pI)

22.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0019740)

Species Orthologous Gene IDs
malus_domestica MD10G1029900.v1.1
pyrus_communis pycom01g11380 pycom10g21340
rosa_multiflora Rmu_sc0010379.1_g000002
rosa_roxburghii Rroxscaffold_4G00295260
rosa_samantha Rh1CG320300 Rh1DG336700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 116
AccBSI CCGCTC 1 cut(s) 235
AciI CCGC 2 cut(s) 171, 235
AfiI CCNNNNNNNGG 1 cut(s) 116
AgsI TTSAA 1 cut(s) 88
AleI CACNNNNGTG 1 cut(s) 173
AluBI AGCT 1 cut(s) 82
AluI AGCT 1 cut(s) 82
Alw21I GWGCWC 1 cut(s) 185
Alw26I GTCTC 1 cut(s) 155
Asp700I GAANNNNTTC 1 cut(s) 141
AsuHPI GGTGA 1 cut(s) 331
Bbv12I GWGCWC 1 cut(s) 185
BccI CCATC 3 cut(s) 25, 110, 316
BceAI ACGGC 1 cut(s) 158
BciVI GTATCC 1 cut(s) 39
BcoDI GTCTC 1 cut(s) 155
BfaI CTAG 2 cut(s) 158, 165
BfuI GTATCC 1 cut(s) 39
BglII AGATCT 1 cut(s) 327
BmiI GGNNCC 1 cut(s) 239
BmsI GCATC 2 cut(s) 16, 144
BsaBI GATNNNNATC 1 cut(s) 326
BsaJI CCNNGG 1 cut(s) 220
Bsc4I CCNNNNNNNGG 1 cut(s) 116
Bse1I ACTGG 2 cut(s) 149, 271
Bse3DI GCAATG 1 cut(s) 70
Bse8I GATNNNNATC 1 cut(s) 326
BseDI CCNNGG 1 cut(s) 220
BseGI GGATG 1 cut(s) 31
BseJI GATNNNNATC 1 cut(s) 326
BseLI CCNNNNNNNGG 1 cut(s) 116
BseMI GCAATG 1 cut(s) 70
BseNI ACTGG 2 cut(s) 149, 271
BseRI GAGGAG 1 cut(s) 237
BsgI GTGCAG 1 cut(s) 291
BsiHKAI GWGCWC 1 cut(s) 185
BslI CCNNNNNNNGG 1 cut(s) 116
BsmAI GTCTC 1 cut(s) 155
Bsp1286I GDGCHC 1 cut(s) 185
Bsp143I GATC 1 cut(s) 327
BspACI CCGC 2 cut(s) 171, 235
BspHI TCATGA 1 cut(s) 52
BspLI GGNNCC 1 cut(s) 239
BspQI GCTCTTC 1 cut(s) 173
BsrBI CCGCTC 1 cut(s) 235
BsrDI GCAATG 1 cut(s) 70
BsrI ACTGG 2 cut(s) 149, 271
BssECI CCNNGG 1 cut(s) 220
BssMI GATC 1 cut(s) 327
Bst6I CTCTTC 2 cut(s) 173, 240
BstAPI GCANNNNNTGC 1 cut(s) 269
BstF5I GGATG 1 cut(s) 31
BstKTI GATC 1 cut(s) 330
BstMAI GTCTC 1 cut(s) 155
BstMBI GATC 1 cut(s) 327
BstMWI GCNNNNNNNGC 1 cut(s) 269
BstX2I RGATCY 1 cut(s) 327
BstYI RGATCY 1 cut(s) 327
BsuI GTATCC 1 cut(s) 39
BtsCI GGATG 1 cut(s) 31
BtsIMutI CAGTG 1 cut(s) 156
CciI TCATGA 1 cut(s) 52
CviAII CATG 2 cut(s) 53, 253
CviJI RGCY 3 cut(s) 82, 240, 257
CviKI_1 RGCY 3 cut(s) 82, 240, 257
DpnI GATC 1 cut(s) 329
DpnII GATC 1 cut(s) 327
Eam1104I CTCTTC 2 cut(s) 173, 240
EarI CTCTTC 2 cut(s) 173, 240
FaeI CATG 2 cut(s) 56, 256
FaiI YATR 5 cut(s) 38, 54, 206, 254, 294
FalI AAGNNNNNCTT 2 cut(s) 129, 161
FatI CATG 2 cut(s) 52, 252
FokI GGATG 1 cut(s) 38
FspBI CTAG 2 cut(s) 158, 165
Hin1II CATG 2 cut(s) 56, 256
HinfI GANTC 1 cut(s) 211
HphI GGTGA 1 cut(s) 331
Hpy188III TCNNGA 2 cut(s) 53, 110
HpyCH4V TGCA 1 cut(s) 272
HpyF10VI GCNNNNNNNGC 1 cut(s) 269
Hsp92II CATG 2 cut(s) 56, 256
Kzo9I GATC 1 cut(s) 327
LguI GCTCTTC 1 cut(s) 173
LmnI GCTCC 2 cut(s) 232, 237
LpnPI CCDG 5 cut(s) 6, 123, 162, 252, 258
LweI GCATC 2 cut(s) 16, 144
MaeI CTAG 2 cut(s) 158, 165
MaeIII GTNAC 2 cut(s) 62, 95
MalI GATC 1 cut(s) 329
MbiI CCGCTC 1 cut(s) 235
MboI GATC 1 cut(s) 327
MboII GAAGA 3 cut(s) 137, 190, 257
MflI RGATCY 1 cut(s) 327
MhlI GDGCHC 1 cut(s) 185
MluCI AATT 3 cut(s) 91, 192, 310
MlyI GAGTC 1 cut(s) 205
MnlI CCTC 3 cut(s) 196, 215, 218
MroXI GAANNNNTTC 1 cut(s) 141
MseI TTAA 2 cut(s) 288, 333
MslI CAYNNNNRTG 2 cut(s) 35, 173
MwoI GCNNNNNNNGC 1 cut(s) 269
NdeII GATC 1 cut(s) 327
NlaIII CATG 2 cut(s) 56, 256
NlaIV GGNNCC 1 cut(s) 239
NmeAIII GCCGAG 1 cut(s) 266
NmuCI GTSAC 1 cut(s) 62
OliI CACNNNNGTG 1 cut(s) 173
PagI TCATGA 1 cut(s) 52
PciSI GCTCTTC 1 cut(s) 173
PdmI GAANNNNTTC 1 cut(s) 141
PflMI CCANNNNNTGG 1 cut(s) 116
PleI GAGTC 1 cut(s) 205
PpsI GAGTC 1 cut(s) 205
PspN4I GGNNCC 1 cut(s) 239
PsuI RGATCY 1 cut(s) 327
RseI CAYNNNNRTG 2 cut(s) 35, 173
SapI GCTCTTC 1 cut(s) 173
SaqAI TTAA 2 cut(s) 288, 333
Sau3AI GATC 1 cut(s) 327
SchI GAGTC 1 cut(s) 205
SduI GDGCHC 1 cut(s) 185
SetI ASST 2 cut(s) 84, 188
SfaNI GCATC 2 cut(s) 16, 144
SmiMI CAYNNNNRTG 2 cut(s) 35, 173
Sse9I AATT 3 cut(s) 91, 192, 310
SsiI CCGC 2 cut(s) 171, 235
SspMI CTAG 2 cut(s) 158, 165
TasI AATT 3 cut(s) 91, 192, 310
Tru1I TTAA 2 cut(s) 288, 333
Tru9I TTAA 2 cut(s) 288, 333
TscAI CASTG 1 cut(s) 156
TseFI GTSAC 1 cut(s) 62
Tsp45I GTSAC 1 cut(s) 62
TspDTI ATGAA 4 cut(s) 41, 53, 241, 309
TspRI CASTG 1 cut(s) 156
Van91I CCANNNNNTGG 1 cut(s) 116
XmnI GAANNNNTTC 1 cut(s) 141
XspI CTAG 2 cut(s) 158, 165
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.