Rroxscaffold_4G00295260
ERF Family

Belongs to the class I-like SAM-binding methyltransferase superfamily. Cation-independent O- methyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0019740
Physical Location & Seq
Forward (+)
15286557 .. 15287665
1109 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_4G00295260.1

Sequence Viewer

Length: 339 bp
ATGTTTGCAAGTGTTCCAAGTGGGGATGTCATTTTTATGAAGTGGATACTTCATGACTGGAGTGATGAACACTGCTTGAAGCTCCTGAAAAATTGTTATAATGCTATACCATACAATGGAAAAGTAATTGTTGTGGAAGCACTTCTTCCAGTTGTGCCAGAGACTAGCACTGCTGTGAAGAGCACCTCCCAACTTGATGTCCTTATGATGACACAGAACCCAGGAGGAAAAGAGCGAAGCGAACAAGAATTCATAGCCTTGGCAACAGCTGCTGGGTTTCGCGGCATCAGATATGAATGTTTTGTCTGTAACTTTTGGGTTATGGAGTTCTTTAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01058 ko01100 ko01110 map00940 map01058 map01100 map01110
Pfam Domains
Protein Families
Dimerisation Methyltransf_2

Protein Analysis

112

Amino Acids

12.7

Weight (kDa)

5.61

Isoelectric Point (pI)

23.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_2 PF00891 1 - 94 4.9e-31 O-methyltransferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019740)

Species Orthologous Gene IDs
malus_domestica MD10G1029900.v1.1
pyrus_communis pycom01g11380 pycom10g21340
rosa_multiflora Rmu_sc0010379.1_g000002
rosa_roxburghii Rroxscaffold_4G00295260
rosa_samantha Rh1CG320300 Rh1DG336700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 99
AccB7I CCANNNNNTGG 1 cut(s) 116
AccII CGCG 1 cut(s) 282
AciI CCGC 1 cut(s) 282
AcsI RAATTY 1 cut(s) 248
AfiI CCNNNNNNNGG 1 cut(s) 116
AgsI TTSAA 1 cut(s) 79
AjnI CCWGG 1 cut(s) 220
AleI CACNNNNGTG 1 cut(s) 173
AluBI AGCT 2 cut(s) 82, 269
AluI AGCT 2 cut(s) 82, 269
Alw21I GWGCWC 1 cut(s) 185
Alw26I GTCTC 1 cut(s) 155
AlwNI CAGNNNCTG 1 cut(s) 272
ApeKI GCWGC 1 cut(s) 269
ApoI RAATTY 1 cut(s) 248
Asp700I GAANNNNTTC 1 cut(s) 141
Bbv12I GWGCWC 1 cut(s) 185
BbvI GCAGC 1 cut(s) 256
BciT130I CCWGG 1 cut(s) 222
BciVI GTATCC 1 cut(s) 39
BcoDI GTCTC 1 cut(s) 155
BfaI CTAG 1 cut(s) 165
BfuI GTATCC 1 cut(s) 39
BisI GCNGC 2 cut(s) 270, 283
BlsI GCNGC 2 cut(s) 271, 284
Bme1390I CCNGG 1 cut(s) 222
BmrFI CCNGG 1 cut(s) 222
BmsI GCATC 1 cut(s) 294
BpmI CTGGAG 1 cut(s) 79
BsaJI CCNNGG 2 cut(s) 220, 258
Bsc4I CCNNNNNNNGG 1 cut(s) 116
Bse1I ACTGG 2 cut(s) 62, 149
BseBI CCWGG 1 cut(s) 222
BseDI CCNNGG 2 cut(s) 220, 258
BseGI GGATG 1 cut(s) 31
BseLI CCNNNNNNNGG 1 cut(s) 116
BseNI ACTGG 2 cut(s) 62, 149
BseXI GCAGC 1 cut(s) 256
BseYI CCCAGC 1 cut(s) 272
Bsh1236I CGCG 1 cut(s) 282
BsiHKAI GWGCWC 1 cut(s) 185
BslI CCNNNNNNNGG 1 cut(s) 116
BsmAI GTCTC 1 cut(s) 155
Bsp1286I GDGCHC 1 cut(s) 185
BspACI CCGC 1 cut(s) 282
BspFNI CGCG 1 cut(s) 282
BspHI TCATGA 1 cut(s) 52
BspQI GCTCTTC 1 cut(s) 173
BsrI ACTGG 2 cut(s) 62, 149
BssECI CCNNGG 2 cut(s) 220, 258
BssT1I CCWWGG 1 cut(s) 258
Bst2UI CCWGG 1 cut(s) 222
Bst6I CTCTTC 1 cut(s) 173
BstAPI GCANNNNNTGC 1 cut(s) 269
BstF5I GGATG 1 cut(s) 31
BstFNI CGCG 1 cut(s) 282
BstMAI GTCTC 1 cut(s) 155
BstMWI GCNNNNNNNGC 1 cut(s) 269
BstNI CCWGG 1 cut(s) 222
BstSCI CCNGG 1 cut(s) 220
BstUI CGCG 1 cut(s) 282
BstV1I GCAGC 1 cut(s) 256
BsuI GTATCC 1 cut(s) 39
BtsCI GGATG 1 cut(s) 31
BtsI GCAGTG 2 cut(s) 70, 168
BtsIMutI CAGTG 2 cut(s) 70, 168
CaiI CAGNNNCTG 1 cut(s) 272
CciI TCATGA 1 cut(s) 52
CviAII CATG 1 cut(s) 53
CviJI RGCY 3 cut(s) 82, 257, 269
CviKI_1 RGCY 3 cut(s) 82, 257, 269
Eam1104I CTCTTC 1 cut(s) 173
EarI CTCTTC 1 cut(s) 173
Eco130I CCWWGG 1 cut(s) 258
EcoRI GAATTC 1 cut(s) 248
EcoRII CCWGG 1 cut(s) 220
EcoT14I CCWWGG 1 cut(s) 258
ErhI CCWWGG 1 cut(s) 258
FaeI CATG 1 cut(s) 56
FaiI YATR 9 cut(s) 38, 54, 99, 107, 112, 206, 254, 294, 323
FalI AAGNNNNNCTT 2 cut(s) 129, 161
FatI CATG 1 cut(s) 52
Fnu4HI GCNGC 2 cut(s) 270, 283
FokI GGATG 1 cut(s) 38
Fsp4HI GCNGC 2 cut(s) 270, 283
FspBI CTAG 1 cut(s) 165
GluI GCNGC 2 cut(s) 270, 283
GsaI CCCAGC 1 cut(s) 276
GsuI CTGGAG 1 cut(s) 79
Hin1II CATG 1 cut(s) 56
Hpy188I TCNGA 1 cut(s) 290
Hpy188III TCNNGA 2 cut(s) 53, 85
HpyCH4V TGCA 1 cut(s) 8
HpyF10VI GCNNNNNNNGC 1 cut(s) 269
Hsp92II CATG 1 cut(s) 56
LguI GCTCTTC 1 cut(s) 173
LmnI GCTCC 1 cut(s) 87
LpnPI CCDG 7 cut(s) 43, 98, 162, 171, 207, 234, 258
Lsp1109I GCAGC 1 cut(s) 256
LweI GCATC 1 cut(s) 294
MaeI CTAG 1 cut(s) 165
MaeIII GTNAC 1 cut(s) 308
MboII GAAGA 2 cut(s) 137, 190
MhlI GDGCHC 1 cut(s) 185
MluCI AATT 3 cut(s) 91, 126, 248
MnlI CCTC 2 cut(s) 196, 218
MroXI GAANNNNTTC 1 cut(s) 141
MseI TTAA 1 cut(s) 333
MslI CAYNNNNRTG 2 cut(s) 35, 173
MspA1I CMGCKG 1 cut(s) 269
MspR9I CCNGG 1 cut(s) 222
MvaI CCWGG 1 cut(s) 222
MvnI CGCG 1 cut(s) 282
MwoI GCNNNNNNNGC 1 cut(s) 269
NlaIII CATG 1 cut(s) 56
OliI CACNNNNGTG 1 cut(s) 173
PagI TCATGA 1 cut(s) 52
PciSI GCTCTTC 1 cut(s) 173
PdmI GAANNNNTTC 1 cut(s) 141
PflMI CCANNNNNTGG 1 cut(s) 116
PkrI GCNGC 2 cut(s) 271, 284
PsiI TTATAA 1 cut(s) 99
Psp6I CCWGG 1 cut(s) 220
PspFI CCCAGC 1 cut(s) 272
PspGI CCWGG 1 cut(s) 220
PstNI CAGNNNCTG 1 cut(s) 272
PvuII CAGCTG 1 cut(s) 269
RseI CAYNNNNRTG 2 cut(s) 35, 173
SapI GCTCTTC 1 cut(s) 173
SaqAI TTAA 1 cut(s) 333
SatI GCNGC 2 cut(s) 270, 283
ScrFI CCNGG 1 cut(s) 222
SduI GDGCHC 1 cut(s) 185
SetI ASST 3 cut(s) 84, 188, 271
SfaNI GCATC 1 cut(s) 294
SmiMI CAYNNNNRTG 2 cut(s) 35, 173
Sse9I AATT 3 cut(s) 91, 126, 248
SsiI CCGC 1 cut(s) 282
SspMI CTAG 1 cut(s) 165
StyD4I CCNGG 1 cut(s) 220
StyI CCWWGG 1 cut(s) 258
TasI AATT 3 cut(s) 91, 126, 248
TauI GCSGC 1 cut(s) 285
Tru1I TTAA 1 cut(s) 333
Tru9I TTAA 1 cut(s) 333
TscAI CASTG 2 cut(s) 77, 175
TseI GCWGC 1 cut(s) 269
TspDTI ATGAA 5 cut(s) 41, 53, 81, 241, 309
TspRI CASTG 2 cut(s) 77, 175
Van91I CCANNNNNTGG 1 cut(s) 116
XapI RAATTY 1 cut(s) 248
XmnI GAANNNNTTC 1 cut(s) 141
XspI CTAG 1 cut(s) 165
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.