Rh1DG336700
ERF Family

Belongs to the class I-like SAM-binding methyltransferase superfamily. Cation-independent O- methyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0019740
Physical Location & Seq
Forward (+)
56211726 .. 56212185
460 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG336700.1

Sequence Viewer

Length: 339 bp
ATGTTCGCAAGTGTTCCAAGTGGGGATGCCATTTTTATGAAGTGGATACTTCATAACTGGAGTGATGAGCGCTGCTTGAAGCTCCTGAAAAATTGTTACAGTGTTATACCAGACAATGGAAAAGTAATTGTTGTAGAAGAACTTCTTCCAGTTGTGCCAGAGACCAGCACTGCTGTGAAGAGCACCTCGCAAATGGATGTGCTTATGATGACACATTGCCAGGGAGGGAAAGAGCGAAGTGAACAAGAATTCCTAGCCTTGGCAATTGCTACTGGGTTTCGCGGCATCAGATATGAATGTTTTGTCTGTAATTTTTGGGTTATGGAGTTGTTTAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01058 ko01100 ko01110 map00940 map01058 map01100 map01110
Pfam Domains
Protein Families
Dimerisation Methyltransf_2

Protein Analysis

112

Amino Acids

12.76

Weight (kDa)

5.63

Isoelectric Point (pI)

27.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_2 PF00891 1 - 94 3.6e-27 O-methyltransferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019740)

Species Orthologous Gene IDs
malus_domestica MD10G1029900.v1.1
pyrus_communis pycom01g11380 pycom10g21340
rosa_multiflora Rmu_sc0010379.1_g000002
rosa_roxburghii Rroxscaffold_4G00295260
rosa_samantha Rh1CG320300 Rh1DG336700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 116
AccII CGCG 1 cut(s) 282
AciI CCGC 1 cut(s) 282
AcsI RAATTY 1 cut(s) 248
AfeI AGCGCT 1 cut(s) 71
AfiI CCNNNNNNNGG 2 cut(s) 116, 259
AgsI TTSAA 1 cut(s) 79
AjnI CCWGG 1 cut(s) 219
AleI CACNNNNGTG 1 cut(s) 173
AloI GAACNNNNNNTCC 2 cut(s) 234, 266
AluBI AGCT 1 cut(s) 82
AluI AGCT 1 cut(s) 82
Alw21I GWGCWC 1 cut(s) 185
Alw26I GTCTC 1 cut(s) 155
Aor51HI AGCGCT 1 cut(s) 71
ApeKI GCWGC 1 cut(s) 72
ApoI RAATTY 1 cut(s) 248
Asp700I GAANNNNTTC 2 cut(s) 141, 144
AspLEI GCGC 1 cut(s) 72
BarI GAAGNNNNNNTAC 2 cut(s) 126, 158
Bbv12I GWGCWC 1 cut(s) 185
BbvI GCAGC 1 cut(s) 59
BciT130I CCWGG 1 cut(s) 221
BciVI GTATCC 1 cut(s) 39
BcoDI GTCTC 1 cut(s) 155
BfaI CTAG 1 cut(s) 254
BfoI RGCGCY 1 cut(s) 73
BfuI GTATCC 1 cut(s) 39
BisI GCNGC 2 cut(s) 73, 283
BlsI GCNGC 2 cut(s) 74, 284
Bme1390I CCNGG 1 cut(s) 221
BmrFI CCNGG 1 cut(s) 221
BmrI ACTGGG 1 cut(s) 282
BmsI GCATC 2 cut(s) 16, 294
BmuI ACTGGG 1 cut(s) 282
BpmI CTGGAG 1 cut(s) 79
BsaI GGTCTC 1 cut(s) 155
BsaJI CCNNGG 2 cut(s) 220, 258
Bsc4I CCNNNNNNNGG 2 cut(s) 116, 259
Bse1I ACTGG 3 cut(s) 62, 149, 277
Bse3DI GCAATG 1 cut(s) 214
BseBI CCWGG 1 cut(s) 221
BseDI CCNNGG 2 cut(s) 220, 258
BseGI GGATG 2 cut(s) 31, 202
BseLI CCNNNNNNNGG 2 cut(s) 116, 259
BseMI GCAATG 1 cut(s) 214
BseNI ACTGG 3 cut(s) 62, 149, 277
BseXI GCAGC 1 cut(s) 59
Bsh1236I CGCG 1 cut(s) 282
BsiHKAI GWGCWC 1 cut(s) 185
BslI CCNNNNNNNGG 2 cut(s) 116, 259
BsmAI GTCTC 1 cut(s) 155
Bso31I GGTCTC 1 cut(s) 155
Bsp1286I GDGCHC 1 cut(s) 185
BspACI CCGC 1 cut(s) 282
BspFNI CGCG 1 cut(s) 282
BspQI GCTCTTC 1 cut(s) 173
BspTNI GGTCTC 1 cut(s) 155
BsrDI GCAATG 1 cut(s) 214
BsrI ACTGG 3 cut(s) 62, 149, 277
BssECI CCNNGG 2 cut(s) 220, 258
BssT1I CCWWGG 1 cut(s) 258
Bst2UI CCWGG 1 cut(s) 221
Bst4CI ACNGT 1 cut(s) 101
Bst6I CTCTTC 1 cut(s) 173
BstF5I GGATG 2 cut(s) 31, 202
BstFNI CGCG 1 cut(s) 282
BstH2I RGCGCY 1 cut(s) 73
BstHHI GCGC 1 cut(s) 72
BstMAI GTCTC 1 cut(s) 155
BstNI CCWGG 1 cut(s) 221
BstSCI CCNGG 1 cut(s) 219
BstUI CGCG 1 cut(s) 282
BstV1I GCAGC 1 cut(s) 59
BsuI GTATCC 1 cut(s) 39
BtsCI GGATG 2 cut(s) 31, 202
BtsI GCAGTG 1 cut(s) 168
BtsIMutI CAGTG 2 cut(s) 106, 168
CfoI GCGC 1 cut(s) 72
CviJI RGCY 2 cut(s) 82, 257
CviKI_1 RGCY 2 cut(s) 82, 257
Eam1104I CTCTTC 1 cut(s) 173
EarI CTCTTC 1 cut(s) 173
Eco130I CCWWGG 1 cut(s) 258
Eco31I GGTCTC 1 cut(s) 155
Eco47III AGCGCT 1 cut(s) 71
EcoRI GAATTC 1 cut(s) 248
EcoRII CCWGG 1 cut(s) 219
EcoT14I CCWWGG 1 cut(s) 258
ErhI CCWWGG 1 cut(s) 258
FaiI YATR 6 cut(s) 38, 54, 107, 206, 294, 323
FalI AAGNNNNNCTT 2 cut(s) 129, 161
Fnu4HI GCNGC 2 cut(s) 73, 283
FokI GGATG 2 cut(s) 38, 209
Fsp4HI GCNGC 2 cut(s) 73, 283
FspBI CTAG 1 cut(s) 254
GlaI GCGC 1 cut(s) 71
GluI GCNGC 2 cut(s) 73, 283
GsuI CTGGAG 1 cut(s) 79
HaeII RGCGCY 1 cut(s) 73
HhaI GCGC 1 cut(s) 72
Hin6I GCGC 1 cut(s) 70
HinP1I GCGC 1 cut(s) 70
Hpy166II GTNNAC 1 cut(s) 242
Hpy188I TCNGA 1 cut(s) 290
Hpy188III TCNNGA 1 cut(s) 85
Hpy8I GTNNAC 1 cut(s) 242
HpyCH4III ACNGT 1 cut(s) 101
HspAI GCGC 1 cut(s) 70
LguI GCTCTTC 1 cut(s) 173
LmnI GCTCC 1 cut(s) 87
LpnPI CCDG 9 cut(s) 43, 98, 123, 162, 171, 178, 206, 233, 258
Lsp1109I GCAGC 1 cut(s) 59
LweI GCATC 2 cut(s) 16, 294
MaeI CTAG 1 cut(s) 254
MaeIII GTNAC 1 cut(s) 95
MboII GAAGA 3 cut(s) 137, 149, 190
MfeI CAATTG 1 cut(s) 264
MhlI GDGCHC 1 cut(s) 185
MluCI AATT 5 cut(s) 91, 126, 248, 264, 310
MnlI CCTC 2 cut(s) 196, 218
MroXI GAANNNNTTC 2 cut(s) 141, 144
MseI TTAA 1 cut(s) 333
MslI CAYNNNNRTG 2 cut(s) 35, 173
MspR9I CCNGG 1 cut(s) 221
MunI CAATTG 1 cut(s) 264
MvaI CCWGG 1 cut(s) 221
MvnI CGCG 1 cut(s) 282
OliI CACNNNNGTG 1 cut(s) 173
PciSI GCTCTTC 1 cut(s) 173
PdmI GAANNNNTTC 2 cut(s) 141, 144
PflMI CCANNNNNTGG 1 cut(s) 116
PkrI GCNGC 2 cut(s) 74, 284
Psp6I CCWGG 1 cut(s) 219
PspGI CCWGG 1 cut(s) 219
RseI CAYNNNNRTG 2 cut(s) 35, 173
SapI GCTCTTC 1 cut(s) 173
SaqAI TTAA 1 cut(s) 333
SatI GCNGC 2 cut(s) 73, 283
ScrFI CCNGG 1 cut(s) 221
SduI GDGCHC 1 cut(s) 185
SetI ASST 2 cut(s) 84, 188
SfaNI GCATC 2 cut(s) 16, 294
SmiMI CAYNNNNRTG 2 cut(s) 35, 173
Sse9I AATT 5 cut(s) 91, 126, 248, 264, 310
SsiI CCGC 1 cut(s) 282
SspMI CTAG 1 cut(s) 254
StyD4I CCNGG 1 cut(s) 219
StyI CCWWGG 1 cut(s) 258
TaaI ACNGT 1 cut(s) 101
TasI AATT 5 cut(s) 91, 126, 248, 264, 310
TauI GCSGC 1 cut(s) 285
Tru1I TTAA 1 cut(s) 333
Tru9I TTAA 1 cut(s) 333
TscAI CASTG 2 cut(s) 106, 175
TseI GCWGC 1 cut(s) 72
TspDTI ATGAA 3 cut(s) 41, 53, 309
TspRI CASTG 2 cut(s) 106, 175
Van91I CCANNNNNTGG 1 cut(s) 116
XapI RAATTY 1 cut(s) 248
XmnI GAANNNNTTC 2 cut(s) 141, 144
XspI CTAG 1 cut(s) 254
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.