pycom01g13910

Nucleolar complex protein 2 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0006353
Physical Location & Seq
Reverse (-)
14239817 .. 14242702
2886 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1185 bp
ATGGGCAAGCTGGGGAAGAAGGCAAGGAAGTTCTCGAAGAAGAATCTCCAGTCCGTTCTCAGAAAAAATCGCAAGTTGAATTCCAAGTTCAACAAAAGGAGAACTTCCAAGAAAGGTGGGAAAGAAGATGGCGGTAAAGAACAGAAAAAGGACGCAGTAGAGTTGTCTAATGCAAGAAATACTGAAGGAGAATACATAGAAGACACTCCTCTTGATGCGATATTCAGTGAAGATGAGAATGATGTGTTTGGAGATGATTCAGACAGTGATGGGAATCTTTCAGAGAACAGGGAAATTCAACTTGAACTTGCGAAGAAAACGAAAAAATTAGACAAACTGAAGGAAAAGGACCCAGATTTTTCTAACTTTCTTGATGGCTGTCATAAGCGATCTGAACAGTTCAGAAACAAAAAGTATGCCGATGAGGATGAGATGAGCGAGGATGATATGCAGCCAGAGAATGTGGATGGTGTTAACACTCACGGTAGCAAGTTGTTGACCAGCTCTGCCATTGATTCTTTGTGTCAACTAGTCAAAGAGCACCAAAGTGTGCCTGCGCTTACTAGTCTATTAAATGGGTACCGTGCTGCATGCCACTATGGAGCTGAATCAACCAGGGTCTTTGATGCTGATTCTTGTTGTGGAATTCAGAACAGTGAAACCTTTTGCAAGATATTAATGTTCATGCTTAATGAGGCTGATAATATATTTAGGGGGCTAATGGGCATATCAAGCTCCAATCCCAAGAAAGAGAAGAGTTTGGACTTAAGCAAGAATTCAAAATGGAATACTCTTAAGCCATTGATAAAATCATATTTGAGGAGTACCCTTTTACTGCTGAATGAGGTTAATGAATCTGAGATATTGGCCTTCTCCTTAGCACGGATCAGAGCTTCGTTGACATTTTTTGTTGCTTTCCCTTCTTTGCTCCGCAGACTTATCAAGATTGCTGTTCATCTGTGGGCAACAGGGAAAGGAACTATATCATCTCTATCCTTTTTCATCATACGCGATGTGGCTTCTGTTTTTCGCTCTGATTGCTTTGACACCTGCTTTATTAACACATATAAATCATTTATTGGTCATTGCCAATTTATGGAGCCTGTTCTATTTCAACACGTACAGTTTCTAAGAAACTCCTTTGTTGAGCTATGCTCTGTGGATCGATCTGCAGAAAGCATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Noc2

Protein Analysis

395

Amino Acids

44.58

Weight (kDa)

8.39

Isoelectric Point (pI)

42.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Noc2 PF03715 347 - 390 2.6e-06 Noc2p family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1058
Acc36I ACCTGC 1 cut(s) 1058
Acc65I GGTACC 1 cut(s) 579
AccB1I GGYRCC 1 cut(s) 579
AccB7I CCANNNNNTGG 1 cut(s) 1096
AccII CGCG 1 cut(s) 1011
AciI CCGC 2 cut(s) 132, 931
AclWI GGATC 2 cut(s) 893, 1170
AcsI RAATTY 4 cut(s) 79, 294, 645, 775
AcuI CTGAAG 2 cut(s) 204, 359
AfaI GTAC 3 cut(s) 581, 826, 1122
AfiI CCNNNNNNNGG 2 cut(s) 882, 1096
AflII CTTAAG 2 cut(s) 766, 794
AflIII ACRYGT 1 cut(s) 1117
AgsI TTSAA 6 cut(s) 79, 91, 299, 305, 780, 1115
AhlI ACTAGT 2 cut(s) 529, 563
AjnI CCWGG 1 cut(s) 614
AleI CACNNNNGTG 1 cut(s) 546
AluBI AGCT 6 cut(s) 10, 504, 605, 735, 893, 1150
AluI AGCT 6 cut(s) 10, 504, 605, 735, 893, 1150
Alw21I GWGCWC 1 cut(s) 543
AlwI GGATC 2 cut(s) 893, 1170
AoxI GGCC 1 cut(s) 867
ApeKI GCWGC 2 cut(s) 451, 587
ApoI RAATTY 4 cut(s) 79, 294, 645, 775
AseI ATTAAT 1 cut(s) 677
Asp718I GGTACC 1 cut(s) 579
AspLEI GCGC 1 cut(s) 559
AspS9I GGNCC 1 cut(s) 349
AvaII GGWCC 1 cut(s) 349
BanI GGYRCC 1 cut(s) 579
BbsI GAAGAC 1 cut(s) 207
Bbv12I GWGCWC 1 cut(s) 543
BbvI GCAGC 2 cut(s) 463, 574
BccI CCATC 4 cut(s) 122, 263, 368, 461
BciT130I CCWGG 1 cut(s) 616
BcuI ACTAGT 2 cut(s) 529, 563
BfaI CTAG 3 cut(s) 530, 564, 1183
BfmI CTRYAG 1 cut(s) 1170
BfrI CTTAAG 2 cut(s) 766, 794
BfuAI ACCTGC 1 cut(s) 1058
BisI GCNGC 2 cut(s) 452, 588
BlsI GCNGC 2 cut(s) 453, 589
Bme1390I CCNGG 1 cut(s) 616
Bme18I GGWCC 1 cut(s) 349
BmgT120I GGNCC 1 cut(s) 349
BmiI GGNNCC 3 cut(s) 351, 581, 1101
BmrFI CCNGG 1 cut(s) 616
BmsI GCATC 2 cut(s) 205, 616
BpiI GAAGAC 1 cut(s) 207
BplI GAGNNNNNCTC 2 cut(s) 1139, 1171
BpmI CTGGAG 1 cut(s) 32
Bpu10I CCTNAGC 1 cut(s) 877
Bsa29I ATCGAT 1 cut(s) 1165
BsaAI YACGTR 1 cut(s) 1120
BsaBI GATNNNNATC 1 cut(s) 273
BsaJI CCNNGG 1 cut(s) 615
Bsc4I CCNNNNNNNGG 2 cut(s) 882, 1096
Bse1I ACTGG 1 cut(s) 49
Bse3DI GCAATG 1 cut(s) 1084
Bse8I GATNNNNATC 1 cut(s) 273
BseBI CCWGG 1 cut(s) 616
BseCI ATCGAT 1 cut(s) 1165
BseDI CCNNGG 1 cut(s) 615
BseGI GGATG 3 cut(s) 433, 448, 472
BseJI GATNNNNATC 1 cut(s) 273
BseLI CCNNNNNNNGG 2 cut(s) 882, 1096
BseMI GCAATG 1 cut(s) 1084
BseMII CTCAG 2 cut(s) 73, 849
BseNI ACTGG 1 cut(s) 49
BseRI GAGGAG 2 cut(s) 198, 835
BseXI GCAGC 2 cut(s) 463, 574
BseYI CCCAGC 1 cut(s) 10
Bsh1236I CGCG 1 cut(s) 1011
BshFI GGCC 1 cut(s) 869
BshNI GGYRCC 1 cut(s) 579
BshVI ATCGAT 1 cut(s) 1165
BsiHKAI GWGCWC 1 cut(s) 543
BslI CCNNNNNNNGG 2 cut(s) 882, 1096
BsnI GGCC 1 cut(s) 869
Bsp1286I GDGCHC 1 cut(s) 543
Bsp143I GATC 4 cut(s) 389, 885, 1162, 1166
BspACI CCGC 2 cut(s) 132, 931
BspANI GGCC 1 cut(s) 869
BspCNI CTCAG 2 cut(s) 72, 850
BspDI ATCGAT 1 cut(s) 1165
BspFNI CGCG 1 cut(s) 1011
BspLI GGNNCC 3 cut(s) 351, 581, 1101
BspMAI CTGCAG 1 cut(s) 1174
BspMI ACCTGC 1 cut(s) 1058
BspPI GGATC 2 cut(s) 893, 1170
BspT107I GGYRCC 1 cut(s) 579
BspTI CTTAAG 2 cut(s) 766, 794
BsrDI GCAATG 1 cut(s) 1084
BsrI ACTGG 1 cut(s) 49
BssECI CCNNGG 1 cut(s) 615
BssMI GATC 4 cut(s) 389, 885, 1162, 1166
Bst2UI CCWGG 1 cut(s) 616
Bst4CI ACNGT 6 cut(s) 266, 399, 485, 584, 656, 1125
Bst6I CTCTTC 1 cut(s) 749
BstAFI CTTAAG 2 cut(s) 766, 794
BstBAI YACGTR 1 cut(s) 1120
BstC8I GCNNGC 3 cut(s) 8, 555, 592
BstDEI CTNAG 4 cut(s) 59, 858, 877, 1130
BstF5I GGATG 3 cut(s) 433, 448, 472
BstFNI CGCG 1 cut(s) 1011
BstHHI GCGC 1 cut(s) 559
BstKTI GATC 4 cut(s) 392, 888, 1165, 1169
BstMBI GATC 4 cut(s) 389, 885, 1162, 1166
BstMWI GCNNNNNNNGC 2 cut(s) 732, 1038
BstNI CCWGG 1 cut(s) 616
BstNSI RCATGY 1 cut(s) 594
BstSCI CCNGG 1 cut(s) 614
BstSFI CTRYAG 1 cut(s) 1170
BstUI CGCG 1 cut(s) 1011
BstV1I GCAGC 2 cut(s) 463, 574
BstV2I GAAGAC 1 cut(s) 207
Bsu15I ATCGAT 1 cut(s) 1165
BsuRI GGCC 1 cut(s) 869
BsuTUI ATCGAT 1 cut(s) 1165
BtgZI GCGATG 1 cut(s) 1026
BtsCI GGATG 3 cut(s) 433, 448, 472
BtsIMutI CAGTG 3 cut(s) 232, 271, 661
BveI ACCTGC 1 cut(s) 1058
Cac8I GCNNGC 3 cut(s) 8, 555, 592
CfoI GCGC 1 cut(s) 559
Cfr13I GGNCC 1 cut(s) 349
ClaI ATCGAT 1 cut(s) 1165
CseI GACGC 1 cut(s) 161
Csp6I GTAC 3 cut(s) 580, 825, 1121
CspCI CAANNNNNGTGG 2 cut(s) 97, 132
CviAII CATG 2 cut(s) 591, 685
CviQI GTAC 3 cut(s) 580, 825, 1121
DdeI CTNAG 4 cut(s) 59, 858, 877, 1130
DpnI GATC 4 cut(s) 391, 887, 1164, 1168
DpnII GATC 4 cut(s) 389, 885, 1162, 1166
Eam1104I CTCTTC 1 cut(s) 749
EarI CTCTTC 1 cut(s) 749
Eco47I GGWCC 1 cut(s) 349
Eco57I CTGAAG 2 cut(s) 204, 359
EcoO109I RGGNCCY 1 cut(s) 349
EcoRI GAATTC 3 cut(s) 79, 645, 775
EcoRII CCWGG 1 cut(s) 614
FaeI CATG 2 cut(s) 594, 688
FalI AAGNNNNNCTT 2 cut(s) 88, 120
FatI CATG 2 cut(s) 590, 684
Fnu4HI GCNGC 2 cut(s) 452, 588
FokI GGATG 3 cut(s) 440, 455, 479
Fsp4HI GCNGC 2 cut(s) 452, 588
FspBI CTAG 3 cut(s) 530, 564, 1183
GlaI GCGC 1 cut(s) 558
GluI GCNGC 2 cut(s) 452, 588
GsaI CCCAGC 1 cut(s) 14
GsuI CTGGAG 1 cut(s) 32
HaeIII GGCC 1 cut(s) 869
HgaI GACGC 1 cut(s) 161
HhaI GCGC 1 cut(s) 559
Hin1II CATG 2 cut(s) 594, 688
Hin6I GCGC 1 cut(s) 557
HinP1I GCGC 1 cut(s) 557
HincII GTYRAC 4 cut(s) 475, 498, 527, 900
HindII GTYRAC 4 cut(s) 475, 498, 527, 900
HinfI GANTC 7 cut(s) 43, 257, 274, 515, 608, 632, 854
HpaI GTTAAC 1 cut(s) 475
Hpy166II GTNNAC 4 cut(s) 475, 498, 527, 900
Hpy188I TCNGA 9 cut(s) 62, 262, 283, 394, 404, 651, 859, 890, 1036
Hpy188III TCNNGA 4 cut(s) 34, 212, 371, 943
Hpy8I GTNNAC 4 cut(s) 475, 498, 527, 900
HpyAV CCTTC 5 cut(s) 13, 179, 334, 880, 930
HpyCH4III ACNGT 6 cut(s) 266, 399, 485, 584, 656, 1125
HpyCH4IV ACGT 1 cut(s) 1119
HpyCH4V TGCA 5 cut(s) 173, 451, 590, 669, 1172
HpyF10VI GCNNNNNNNGC 2 cut(s) 732, 1038
HpyF3I CTNAG 4 cut(s) 59, 858, 877, 1130
HpySE526I ACGT 1 cut(s) 1119
Hsp92II CATG 2 cut(s) 594, 688
HspAI GCGC 1 cut(s) 557
KpnI GGTACC 1 cut(s) 583
KspAI GTTAAC 1 cut(s) 475
Kzo9I GATC 4 cut(s) 389, 885, 1162, 1166
LmnI GCTCC 4 cut(s) 602, 740, 933, 1099
Lsp1109I GCAGC 2 cut(s) 463, 574
LweI GCATC 2 cut(s) 205, 616
MaeI CTAG 3 cut(s) 530, 564, 1183
MaeII ACGT 1 cut(s) 1119
MalI GATC 4 cut(s) 391, 887, 1164, 1168
MboI GATC 4 cut(s) 389, 885, 1162, 1166
MboII GAAGA 8 cut(s) 28, 49, 52, 137, 212, 242, 325, 766
MhlI GDGCHC 1 cut(s) 543
MluCI AATT 6 cut(s) 79, 294, 326, 645, 775, 1091
MnlI CCTC 6 cut(s) 219, 418, 433, 688, 813, 838
MseI TTAA 8 cut(s) 474, 572, 677, 690, 767, 795, 849, 1059
MslI CAYNNNNRTG 1 cut(s) 546
MspCI CTTAAG 2 cut(s) 766, 794
MspR9I CCNGG 1 cut(s) 616
MvaI CCWGG 1 cut(s) 616
MvnI CGCG 1 cut(s) 1011
MwoI GCNNNNNNNGC 2 cut(s) 732, 1038
NdeII GATC 4 cut(s) 389, 885, 1162, 1166
NlaIII CATG 2 cut(s) 594, 688
NlaIV GGNNCC 3 cut(s) 351, 581, 1101
NspI RCATGY 1 cut(s) 594
OliI CACNNNNGTG 1 cut(s) 546
PaeI GCATGC 1 cut(s) 594
PaqCI CACCTGC 1 cut(s) 1058
PfeI GAWTC 7 cut(s) 43, 257, 274, 515, 608, 632, 854
PflMI CCANNNNNTGG 1 cut(s) 1096
PkrI GCNGC 2 cut(s) 453, 589
Ppu21I YACGTR 1 cut(s) 1120
PpuMI RGGWCCY 1 cut(s) 349
PshBI ATTAAT 1 cut(s) 677
Psp5II RGGWCCY 1 cut(s) 349
Psp6I CCWGG 1 cut(s) 614
PspFI CCCAGC 1 cut(s) 10
PspGI CCWGG 1 cut(s) 614
PspN4I GGNNCC 3 cut(s) 351, 581, 1101
PspPI GGNCC 1 cut(s) 349
PspPPI RGGWCCY 1 cut(s) 349
PstI CTGCAG 1 cut(s) 1174
RsaI GTAC 3 cut(s) 581, 826, 1122
RsaNI GTAC 3 cut(s) 580, 825, 1121
RseI CAYNNNNRTG 1 cut(s) 546
SaqAI TTAA 8 cut(s) 474, 572, 677, 690, 767, 795, 849, 1059
SatI GCNGC 2 cut(s) 452, 588
Sau3AI GATC 4 cut(s) 389, 885, 1162, 1166
Sau96I GGNCC 1 cut(s) 349
ScrFI CCNGG 1 cut(s) 616
SduI GDGCHC 1 cut(s) 543
SfaNI GCATC 2 cut(s) 205, 616
SfcI CTRYAG 1 cut(s) 1170
SinI GGWCC 1 cut(s) 349
SmiMI CAYNNNNRTG 1 cut(s) 546
SmlI CTYRAG 2 cut(s) 766, 794
SmoI CTYRAG 2 cut(s) 766, 794
SpeI ACTAGT 2 cut(s) 529, 563
SphI GCATGC 1 cut(s) 594
Sse9I AATT 6 cut(s) 79, 294, 326, 645, 775, 1091
SsiI CCGC 2 cut(s) 132, 931
SspMI CTAG 3 cut(s) 530, 564, 1183
StyD4I CCNGG 1 cut(s) 614
TaaI ACNGT 6 cut(s) 266, 399, 485, 584, 656, 1125
TaiI ACGT 1 cut(s) 1122
TaqI TCGA 2 cut(s) 35, 1165
TasI AATT 6 cut(s) 79, 294, 326, 645, 775, 1091
TfiI GAWTC 7 cut(s) 43, 257, 274, 515, 608, 632, 854
Tru1I TTAA 8 cut(s) 474, 572, 677, 690, 767, 795, 849, 1059
Tru9I TTAA 8 cut(s) 474, 572, 677, 690, 767, 795, 849, 1059
TscAI CASTG 3 cut(s) 232, 271, 661
TseI GCWGC 2 cut(s) 451, 587
TspDTI ATGAA 4 cut(s) 673, 867, 944, 991
TspGWI ACGGA 2 cut(s) 43, 898
TspRI CASTG 3 cut(s) 232, 271, 661
Van91I CCANNNNNTGG 1 cut(s) 1096
Vha464I CTTAAG 2 cut(s) 766, 794
VpaK11BI GGWCC 1 cut(s) 349
VspI ATTAAT 1 cut(s) 677
XapI RAATTY 4 cut(s) 79, 294, 645, 775
XceI RCATGY 1 cut(s) 594
XspI CTAG 3 cut(s) 530, 564, 1183
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.