Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0007250

Physical Location & Seq

Genomic Coordinates Reverse (-)

14773638 .. 14773883

Gene Structure 246 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g14690.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 246 bp

ATGACTTTATCAAGCTCAAATTTAGTGGACCTGATTGGTAAGGAGTGGTACTTTGTGAGAGTGCACGATGCAGTTCAAGTTTGCCTTCGGCACGTCCAGAGCTTAAGGGAGACGCCTAAAACAGCAGACCCTTCGTCTGGCACTGGAGTCTGGCAACGAGCAGAGGATTCATCGGTGTCCGAACTGGAGTCTGGCACCCAGATTGATCCCCAGTTGGAGCGGCTATTGTCACGAAAATCTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0008272 GO:0008509 GO:0015075 GO:0015103 GO:0015116 GO:0015318 GO:0015698 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0031226 GO:0034220 GO:0044425 GO:0044459 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071944 GO:0072348 GO:0098656 GO:0098660 GO:0098661 GO:1901682 GO:1902358

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

STAS Sulfate_transp

Protein Analysis

82

Amino Acids

9.04

Weight (kDa)

5.56

Isoelectric Point (pI)

42.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007250)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12520 AT3G12520 AT3G12520 AT5G13550
fragaria_vesca	FvH4_7g21210 FvH4_7g21210 FvH4_7g21210
malus_domestica	MD07G1189900.v1.1
prunus_persica	Prupe.2G227400_v2.0.a1 Prupe.2G227400_v2.0.a1 Prupe.2G227400_v2.0.a1 Prupe.2G227400_v2.0.a1
pyrus_communis	pycom01g14690 pycom07g17950
rosa_chinensis	RchiOBHm_Chr1g0365661
rosa_laevigata	RLG00000027419
rosa_multiflora	Rmu_sc0002093.1_g000005
rosa_roxburghii	Rroxscaffold_4G00291110
rosa_rugosa	Rorug01G0322400 Rorug01G0322400
rosa_samantha	Rh1AG331100 Rh1BG292500 Rh1CG309100 Rh1DG324100
rosa_wichuraiana	Rw1G029410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	194
AccBSI	CCGCTC	1 cut(s)	220
AciI	CCGC	1 cut(s)	220
AclWI	GGATC	1 cut(s)	200
AcsI	RAATTY	1 cut(s)	19
AcyI	GRCGYC	1 cut(s)	113
AfaI	GTAC	1 cut(s)	50
AfiI	CCNNNNNNNGG	1 cut(s)	137
AflII	CTTAAG	1 cut(s)	103
AgsI	TTSAA	1 cut(s)	77
AhdI	GACNNNNNGTC	1 cut(s)	133
AjiI	CACGTC	1 cut(s)	94
AluBI	AGCT	2 cut(s)	15, 102
AluI	AGCT	2 cut(s)	15, 102
Alw21I	GWGCWC	1 cut(s)	66
Alw26I	GTCTC	1 cut(s)	104
Alw44I	GTGCAC	1 cut(s)	62
AlwI	GGATC	1 cut(s)	200
ApaLI	GTGCAC	1 cut(s)	62
ApoI	RAATTY	1 cut(s)	19
Asp700I	GAANNNNTTC	1 cut(s)	238
AspS9I	GGNCC	1 cut(s)	28
AvaII	GGWCC	1 cut(s)	28
BaeGI	GKGCMC	1 cut(s)	66
BanI	GGYRCC	1 cut(s)	194
Bbv12I	GWGCWC	1 cut(s)	66
BcgI	CGANNNNNNTGC	2 cut(s)	114, 148
BcoDI	GTCTC	1 cut(s)	104
BfrI	CTTAAG	1 cut(s)	103
BisI	GCNGC	1 cut(s)	221
BlsI	GCNGC	1 cut(s)	222
Bme18I	GGWCC	1 cut(s)	28
BmeRI	GACNNNNNGTC	1 cut(s)	133
BmgBI	CACGTC	1 cut(s)	94
BmgT120I	GGNCC	1 cut(s)	28
BmiI	GGNNCC	1 cut(s)	196
BmrI	ACTGGG	1 cut(s)	205
BmsI	GCATC	1 cut(s)	58
BmuI	ACTGGG	1 cut(s)	205
BpmI	CTGGAG	2 cut(s)	165, 206
BsaHI	GRCGYC	1 cut(s)	113
Bsc4I	CCNNNNNNNGG	1 cut(s)	137
Bse1I	ACTGG	3 cut(s)	148, 189, 211
BseLI	CCNNNNNNNGG	1 cut(s)	137
BseNI	ACTGG	3 cut(s)	148, 189, 211
BseSI	GKGCMC	1 cut(s)	66
BshNI	GGYRCC	1 cut(s)	194
BsiHKAI	GWGCWC	1 cut(s)	66
BslI	CCNNNNNNNGG	1 cut(s)	137
BsmAI	GTCTC	1 cut(s)	104
BsmBI	CGTCTC	1 cut(s)	104
Bsp1286I	GDGCHC	1 cut(s)	66
Bsp143I	GATC	1 cut(s)	205
BspACI	CCGC	1 cut(s)	220
BspLI	GGNNCC	1 cut(s)	196
BspPI	GGATC	1 cut(s)	200
BspT107I	GGYRCC	1 cut(s)	194
BspTI	CTTAAG	1 cut(s)	103
BsrBI	CCGCTC	1 cut(s)	220
BsrI	ACTGG	3 cut(s)	148, 189, 211
BssMI	GATC	1 cut(s)	205
BssNI	GRCGYC	1 cut(s)	113
BstACI	GRCGYC	1 cut(s)	113
BstAFI	CTTAAG	1 cut(s)	103
BstKTI	GATC	1 cut(s)	208
BstMAI	GTCTC	1 cut(s)	104
BstMBI	GATC	1 cut(s)	205
BstSLI	GKGCMC	1 cut(s)	66
BtrI	CACGTC	1 cut(s)	94
BtsIMutI	CAGTG	1 cut(s)	141
Cfr13I	GGNCC	1 cut(s)	28
CseI	GACGC	1 cut(s)	121
Csp6I	GTAC	1 cut(s)	49
CspCI	CAANNNNNGTGG	2 cut(s)	6, 41
CviJI	RGCY	3 cut(s)	15, 102, 223
CviKI_1	RGCY	3 cut(s)	15, 102, 223
CviQI	GTAC	1 cut(s)	49
DpnI	GATC	1 cut(s)	207
DpnII	GATC	1 cut(s)	205
DriI	GACNNNNNGTC	1 cut(s)	133
Eam1105I	GACNNNNNGTC	1 cut(s)	133
Eco47I	GGWCC	1 cut(s)	28
Esp3I	CGTCTC	1 cut(s)	104
FalI	AAGNNNNNCTT	2 cut(s)	69, 101
Fnu4HI	GCNGC	1 cut(s)	221
Fsp4HI	GCNGC	1 cut(s)	221
GluI	GCNGC	1 cut(s)	221
GsuI	CTGGAG	2 cut(s)	165, 206
HgaI	GACGC	1 cut(s)	121
Hin1I	GRCGYC	1 cut(s)	113
HinfI	GANTC	3 cut(s)	147, 167, 188
Hpy166II	GTNNAC	2 cut(s)	28, 64
Hpy188I	TCNGA	1 cut(s)	181
Hpy188III	TCNNGA	3 cut(s)	97, 231, 243
Hpy8I	GTNNAC	2 cut(s)	28, 64
HpyAV	CCTTC	2 cut(s)	95, 141
HpyCH4IV	ACGT	1 cut(s)	93
HpyCH4V	TGCA	2 cut(s)	64, 71
HpySE526I	ACGT	1 cut(s)	93
Hsp92I	GRCGYC	1 cut(s)	113
Kzo9I	GATC	1 cut(s)	205
LmnI	GCTCC	1 cut(s)	217
LpnPI	CCDG	9 cut(s)	44, 110, 123, 129, 136, 170, 177, 212, 224
LweI	GCATC	1 cut(s)	58
MaeII	ACGT	1 cut(s)	93
MaeIII	GTNAC	1 cut(s)	228
MalI	GATC	1 cut(s)	207
MbiI	CCGCTC	1 cut(s)	220
MboI	GATC	1 cut(s)	205
MboII	GAAGA	1 cut(s)	231
MhlI	GDGCHC	1 cut(s)	66
MluCI	AATT	1 cut(s)	19
MlyI	GAGTC	2 cut(s)	156, 197
MmeI	TCCRAC	1 cut(s)	195
MnlI	CCTC	1 cut(s)	157
MroXI	GAANNNNTTC	1 cut(s)	238
MseI	TTAA	1 cut(s)	104
MspCI	CTTAAG	1 cut(s)	103
NdeII	GATC	1 cut(s)	205
NlaIV	GGNNCC	1 cut(s)	196
NmuCI	GTSAC	1 cut(s)	228
PdmI	GAANNNNTTC	1 cut(s)	238
PfeI	GAWTC	1 cut(s)	167
PkrI	GCNGC	1 cut(s)	222
PleI	GAGTC	2 cut(s)	155, 196
PpsI	GAGTC	2 cut(s)	155, 196
PspN4I	GGNNCC	1 cut(s)	196
PspPI	GGNCC	1 cut(s)	28
RsaI	GTAC	1 cut(s)	50
RsaNI	GTAC	1 cut(s)	49
SaqAI	TTAA	1 cut(s)	104
SatI	GCNGC	1 cut(s)	221
Sau3AI	GATC	1 cut(s)	205
Sau96I	GGNCC	1 cut(s)	28
SchI	GAGTC	2 cut(s)	156, 197
SduI	GDGCHC	1 cut(s)	66
SetI	ASST	4 cut(s)	17, 33, 96, 104
SfaNI	GCATC	1 cut(s)	58
SinI	GGWCC	1 cut(s)	28
SmlI	CTYRAG	1 cut(s)	103
SmoI	CTYRAG	1 cut(s)	103
Sse9I	AATT	1 cut(s)	19
SsiI	CCGC	1 cut(s)	220
TaiI	ACGT	1 cut(s)	96
TasI	AATT	1 cut(s)	19
TauI	GCSGC	1 cut(s)	223
TfiI	GAWTC	1 cut(s)	167
Tru1I	TTAA	1 cut(s)	104
Tru9I	TTAA	1 cut(s)	104
TscAI	CASTG	1 cut(s)	148
TseFI	GTSAC	1 cut(s)	228
Tsp45I	GTSAC	1 cut(s)	228
TspDTI	ATGAA	1 cut(s)	159
TspRI	CASTG	1 cut(s)	148
Vha464I	CTTAAG	1 cut(s)	103
VneI	GTGCAC	1 cut(s)	62
VpaK11BI	GGWCC	1 cut(s)	28
XapI	RAATTY	1 cut(s)	19
XmnI	GAANNNNTTC	1 cut(s)	238

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.