pycom01g23060

Belongs to the spermidine spermine synthase family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
Physical Location & Seq
Forward (+)
20502284 .. 20502887
604 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 276 bp
ATGCTTGGGCGAGTGTTCCTACGTATCCAAGATTACTTCTTGTGCAGTGGTGTGATAGGTTTTCTGTTGTGCTCAACAGCGGGGCCTCCCGTTGATTTCAAAAATCCCGTCAATTCTGTTGAGAAGTTGGAAGGAGCTCTCAAACATAAGAGAGAACTTAAGTTCTATAACTCCGAGATGCACTCAGCTGCCTTTGCGTTGCCTCCTTTCTTGAGGAGGGAGGTGAGTGCACTACGTGAATCTTCAACACCGGCAAGACAAATCGGCGAGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

92

Amino Acids

10.21

Weight (kDa)

9.39

Isoelectric Point (pI)

54.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0018087)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 80
AdeI CACNNNGTG 1 cut(s) 236
AflII CTTAAG 1 cut(s) 158
AgsI TTSAA 2 cut(s) 100, 246
AluBI AGCT 2 cut(s) 137, 188
AluI AGCT 2 cut(s) 137, 188
Alw21I GWGCWC 3 cut(s) 74, 139, 232
Alw44I GTGCAC 1 cut(s) 228
AoxI GGCC 1 cut(s) 83
ApaLI GTGCAC 1 cut(s) 228
ApeKI GCWGC 1 cut(s) 188
ArsI GACNNNNNNTTYG 2 cut(s) 93, 125
AspS9I GGNCC 1 cut(s) 83
AsuHPI GGTGA 1 cut(s) 235
BaeGI GKGCMC 1 cut(s) 232
BanII GRGCYC 1 cut(s) 139
Bbv12I GWGCWC 3 cut(s) 74, 139, 232
BbvI GCAGC 1 cut(s) 175
BciVI GTATCC 1 cut(s) 35
BfrI CTTAAG 1 cut(s) 158
BfuI GTATCC 1 cut(s) 35
BisI GCNGC 1 cut(s) 189
BlsI GCNGC 1 cut(s) 190
BmgT120I GGNCC 1 cut(s) 83
BmiI GGNNCC 1 cut(s) 84
BmsI GCATC 1 cut(s) 168
BplI GAGNNNNNCTC 2 cut(s) 167, 199
BpuEI CTTGAG 1 cut(s) 232
BsaAI YACGTR 2 cut(s) 23, 236
Bse118I RCCGGY 1 cut(s) 250
BseMII CTCAG 1 cut(s) 198
BseRI GAGGAG 1 cut(s) 229
BseSI GKGCMC 1 cut(s) 232
BseXI GCAGC 1 cut(s) 175
BsgI GTGCAG 1 cut(s) 64
BshFI GGCC 1 cut(s) 85
BsiHKAI GWGCWC 3 cut(s) 74, 139, 232
BsiSI CCGG 1 cut(s) 251
BsnI GGCC 1 cut(s) 85
Bsp1286I GDGCHC 3 cut(s) 74, 139, 232
BspACI CCGC 1 cut(s) 80
BspANI GGCC 1 cut(s) 85
BspCNI CTCAG 1 cut(s) 197
BspLI GGNNCC 1 cut(s) 84
BspTI CTTAAG 1 cut(s) 158
BsrFI RCCGGY 1 cut(s) 250
BssAI RCCGGY 1 cut(s) 250
BstAFI CTTAAG 1 cut(s) 158
BstBAI YACGTR 2 cut(s) 23, 236
BstDEI CTNAG 1 cut(s) 184
BstMWI GCNNNNNNNGC 1 cut(s) 194
BstSLI GKGCMC 1 cut(s) 232
BstSNI TACGTA 1 cut(s) 23
BstV1I GCAGC 1 cut(s) 175
BsuI GTATCC 1 cut(s) 35
BsuRI GGCC 1 cut(s) 85
BtsI GCAGTG 1 cut(s) 52
BtsIMutI CAGTG 1 cut(s) 52
Cfr10I RCCGGY 1 cut(s) 250
Cfr13I GGNCC 1 cut(s) 83
CviJI RGCY 3 cut(s) 85, 137, 188
CviKI_1 RGCY 3 cut(s) 85, 137, 188
DdeI CTNAG 1 cut(s) 184
DraIII CACNNNGTG 1 cut(s) 236
Ecl136II GAGCTC 1 cut(s) 137
Eco105I TACGTA 1 cut(s) 23
Eco24I GRGCYC 1 cut(s) 139
Eco53kI GAGCTC 1 cut(s) 137
EcoICRI GAGCTC 1 cut(s) 137
EcoO109I RGGNCCY 1 cut(s) 83
EcoT38I GRGCYC 1 cut(s) 139
FaiI YATR 2 cut(s) 147, 168
FauI CCCGC 1 cut(s) 73
Fnu4HI GCNGC 1 cut(s) 189
FriOI GRGCYC 1 cut(s) 139
Fsp4HI GCNGC 1 cut(s) 189
GluI GCNGC 1 cut(s) 189
HaeIII GGCC 1 cut(s) 85
HapII CCGG 1 cut(s) 251
HinfI GANTC 1 cut(s) 239
HpaII CCGG 1 cut(s) 251
HphI GGTGA 1 cut(s) 235
Hpy166II GTNNAC 1 cut(s) 230
Hpy188I TCNGA 1 cut(s) 175
Hpy188III TCNNGA 1 cut(s) 211
Hpy8I GTNNAC 1 cut(s) 230
HpyAV CCTTC 1 cut(s) 125
HpyCH4IV ACGT 2 cut(s) 22, 235
HpyCH4V TGCA 3 cut(s) 45, 181, 230
HpyF10VI GCNNNNNNNGC 1 cut(s) 194
HpyF3I CTNAG 1 cut(s) 184
HpySE526I ACGT 2 cut(s) 22, 235
LmnI GCTCC 1 cut(s) 134
LpnPI CCDG 1 cut(s) 264
Lsp1109I GCAGC 1 cut(s) 175
LweI GCATC 1 cut(s) 168
MaeII ACGT 2 cut(s) 22, 235
MboII GAAGA 1 cut(s) 234
MhlI GDGCHC 3 cut(s) 74, 139, 232
MluCI AATT 1 cut(s) 112
MmeI TCCRAC 1 cut(s) 108
MnlI CCTC 5 cut(s) 96, 207, 210, 213, 214
MseI TTAA 1 cut(s) 159
MspA1I CMGCKG 2 cut(s) 80, 188
MspCI CTTAAG 1 cut(s) 158
MspI CCGG 1 cut(s) 251
MwoI GCNNNNNNNGC 1 cut(s) 194
NlaIV GGNNCC 1 cut(s) 84
PfeI GAWTC 1 cut(s) 239
PkrI GCNGC 1 cut(s) 190
Ppu21I YACGTR 2 cut(s) 23, 236
Psp124BI GAGCTC 1 cut(s) 139
PspN4I GGNNCC 1 cut(s) 84
PspPI GGNCC 1 cut(s) 83
PvuII CAGCTG 1 cut(s) 188
SacI GAGCTC 1 cut(s) 139
SaqAI TTAA 1 cut(s) 159
SatI GCNGC 1 cut(s) 189
Sau96I GGNCC 1 cut(s) 83
SduI GDGCHC 3 cut(s) 74, 139, 232
SetI ASST 6 cut(s) 25, 61, 139, 190, 225, 238
SfaNI GCATC 1 cut(s) 168
SmlI CTYRAG 2 cut(s) 158, 211
SmoI CTYRAG 2 cut(s) 158, 211
SnaBI TACGTA 1 cut(s) 23
Sse9I AATT 1 cut(s) 112
SsiI CCGC 1 cut(s) 80
SstI GAGCTC 1 cut(s) 139
TaiI ACGT 2 cut(s) 25, 238
TasI AATT 1 cut(s) 112
TfiI GAWTC 1 cut(s) 239
Tru1I TTAA 1 cut(s) 159
Tru9I TTAA 1 cut(s) 159
TscAI CASTG 1 cut(s) 52
TseI GCWGC 1 cut(s) 188
TspRI CASTG 1 cut(s) 52
Vha464I CTTAAG 1 cut(s) 158
VneI GTGCAC 1 cut(s) 228
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.