ATPase family AAA domain-containing protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G03060 AT5G16930 |
| fragaria_vesca | FvH4_7g33981 FvH4_7g33981 FvH4_7g33981 |
| malus_domestica | MD01G1236100.v1.1 MD07G1308800.v1.1 |
| prunus_persica | Prupe.2G326200_v2.0.a1 |
| pyrus_communis | pycom01g24410 pycom07g28090 |
| rosa_chinensis | RchiOBHm_Chr1g0384221 |
| rosa_laevigata | RLG00000026058 |
| rosa_multiflora | Rmu_sc0005139.1_g000003 Rmu_sc0014578.1_g000003 |
| rosa_roxburghii | Rroxscaffold_4G00276840 |
| rosa_rugosa | Rorug01G0445900 |
| rosa_samantha | Rh1AG471400 Rh1BG429200 Rh1CG441800 Rh1DG461900 |
| rosa_wichuraiana | Rw1G040110 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 941 |
| Acc36I | ACCTGC | 2 cut(s) | 810, 941 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 604, 1259 |
| AccBSI | CCGCTC | 1 cut(s) | 1450 |
| AccI | GTMKAC | 3 cut(s) | 652, 685, 1899 |
| AccII | CGCG | 2 cut(s) | 312, 1890 |
| AclWI | GGATC | 2 cut(s) | 287, 1868 |
| AcoI | YGGCCR | 2 cut(s) | 3, 1581 |
| AcsI | RAATTY | 4 cut(s) | 517, 724, 1607, 1934 |
| AcuI | CTGAAG | 2 cut(s) | 1148, 1667 |
| AfaI | GTAC | 1 cut(s) | 1667 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 250, 604, 1061, 1259, 1525, 1619, 1620, 1843 |
| AgsI | TTSAA | 8 cut(s) | 103, 409, 452, 506, 770, 886, 978, 1607 |
| AhlI | ACTAGT | 1 cut(s) | 913 |
| AjnI | CCWGG | 3 cut(s) | 269, 1252, 1618 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1039, 1071 |
| Alw21I | GWGCWC | 1 cut(s) | 766 |
| Alw26I | GTCTC | 1 cut(s) | 383 |
| AlwI | GGATC | 2 cut(s) | 287, 1868 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1259 |
| AoxI | GGCC | 7 cut(s) | 3, 45, 94, 468, 1131, 1386, 1581 |
| ApoI | RAATTY | 4 cut(s) | 517, 724, 1607, 1934 |
| AspLEI | GCGC | 6 cut(s) | 187, 312, 314, 667, 1088, 1489 |
| AspS9I | GGNCC | 5 cut(s) | 95, 799, 1247, 1346, 1386 |
| AsuC2I | CCSGG | 1 cut(s) | 1560 |
| AsuHPI | GGTGA | 5 cut(s) | 388, 994, 1151, 1526, 1574 |
| AsuII | TTCGAA | 1 cut(s) | 729 |
| AsuNHI | GCTAGC | 1 cut(s) | 493 |
| AvaII | GGWCC | 3 cut(s) | 799, 1247, 1346 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1358, 1391 |
| BalI | TGGCCA | 1 cut(s) | 5 |
| BanII | GRGCYC | 2 cut(s) | 237, 766 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 458, 490 |
| Bbv12I | GWGCWC | 1 cut(s) | 766 |
| BccI | CCATC | 5 cut(s) | 479, 556, 598, 1027, 1279 |
| BceAI | ACGGC | 3 cut(s) | 23, 109, 172 |
| BciT130I | CCWGG | 3 cut(s) | 271, 1254, 1620 |
| BciVI | GTATCC | 2 cut(s) | 451, 1844 |
| BclI | TGATCA | 2 cut(s) | 262, 865 |
| BcnI | CCSGG | 1 cut(s) | 1560 |
| BcoDI | GTCTC | 1 cut(s) | 383 |
| BcuI | ACTAGT | 1 cut(s) | 913 |
| BfaI | CTAG | 6 cut(s) | 494, 531, 713, 914, 944, 1278 |
| BfmI | CTRYAG | 3 cut(s) | 693, 783, 948 |
| BfoI | RGCGCY | 1 cut(s) | 1089 |
| BfuAI | ACCTGC | 2 cut(s) | 810, 941 |
| BfuI | GTATCC | 2 cut(s) | 451, 1844 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 41, 44 |
| BlpI | GCTNAGC | 2 cut(s) | 708, 1914 |
| Bme1390I | CCNGG | 4 cut(s) | 271, 1254, 1560, 1620 |
| Bme18I | GGWCC | 3 cut(s) | 799, 1247, 1346 |
| BmgT120I | GGNCC | 5 cut(s) | 95, 799, 1247, 1346, 1386 |
| BmiI | GGNNCC | 4 cut(s) | 195, 596, 800, 1706 |
| BmrFI | CCNGG | 4 cut(s) | 271, 1254, 1560, 1620 |
| BmrI | ACTGGG | 2 cut(s) | 1092, 1269 |
| BmsI | GCATC | 3 cut(s) | 739, 1423, 1927 |
| BmtI | GCTAGC | 1 cut(s) | 497 |
| BmuI | ACTGGG | 2 cut(s) | 1092, 1269 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1459, 1491 |
| BpmI | CTGGAG | 3 cut(s) | 326, 1236, 1965 |
| Bpu10I | CCTNAGC | 3 cut(s) | 297, 1188, 1674 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 708, 1914 |
| Bpu14I | TTCGAA | 1 cut(s) | 729 |
| BpuMI | CCSGG | 1 cut(s) | 1560 |
| BsaJI | CCNNGG | 8 cut(s) | 39, 249, 269, 1055, 1349, 1524, 1558, 1619 |
| BsaWI | WCCGGW | 1 cut(s) | 218 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 360, 390, 1317, 1347 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 250, 604, 1061, 1259, 1525, 1619, 1620, 1843 |
| Bse1I | ACTGG | 2 cut(s) | 1098, 1264 |
| Bse3DI | GCAATG | 3 cut(s) | 265, 441, 1668 |
| BseBI | CCWGG | 3 cut(s) | 271, 1254, 1620 |
| BseDI | CCNNGG | 8 cut(s) | 39, 249, 269, 1055, 1349, 1524, 1558, 1619 |
| BseGI | GGATG | 3 cut(s) | 547, 567, 1336 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 250, 604, 1061, 1259, 1525, 1619, 1620, 1843 |
| BseMI | GCAATG | 3 cut(s) | 265, 441, 1668 |
| BseMII | CTCAG | 7 cut(s) | 288, 393, 512, 816, 1688, 1745, 1905 |
| BseNI | ACTGG | 2 cut(s) | 1098, 1264 |
| BsePI | GCGCGC | 1 cut(s) | 310 |
| BseRI | GAGGAG | 4 cut(s) | 202, 494, 713, 1149 |
| Bsh1236I | CGCG | 2 cut(s) | 312, 1890 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1588 |
| BshFI | GGCC | 7 cut(s) | 5, 47, 96, 470, 1133, 1388, 1583 |
| BsiEI | CGRYCG | 1 cut(s) | 1588 |
| BsiHKAI | GWGCWC | 1 cut(s) | 766 |
| BsiSI | CCGG | 2 cut(s) | 219, 1560 |
| BslFI | GGGAC | 2 cut(s) | 812, 1026 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 250, 604, 1061, 1259, 1525, 1619, 1620, 1843 |
| BsmAI | GTCTC | 1 cut(s) | 383 |
| BsmFI | GGGAC | 2 cut(s) | 812, 1026 |
| BsnI | GGCC | 7 cut(s) | 5, 47, 96, 470, 1133, 1388, 1583 |
| Bsp119I | TTCGAA | 1 cut(s) | 729 |
| Bsp1286I | GDGCHC | 2 cut(s) | 237, 766 |
| Bsp143I | GATC | 7 cut(s) | 262, 292, 865, 901, 1564, 1585, 1873 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 708, 1914 |
| Bsp68I | TCGCGA | 1 cut(s) | 1890 |
| BspANI | GGCC | 7 cut(s) | 5, 47, 96, 470, 1133, 1388, 1583 |
| BspCNI | CTCAG | 7 cut(s) | 289, 394, 511, 817, 1687, 1744, 1906 |
| BspFNI | CGCG | 2 cut(s) | 312, 1890 |
| BspLI | GGNNCC | 4 cut(s) | 195, 596, 800, 1706 |
| BspMAI | CTGCAG | 3 cut(s) | 697, 787, 952 |
| BspMI | ACCTGC | 2 cut(s) | 810, 941 |
| BspOI | GCTAGC | 1 cut(s) | 497 |
| BspPI | GGATC | 2 cut(s) | 287, 1868 |
| BspQI | GCTCTTC | 1 cut(s) | 1244 |
| BspT104I | TTCGAA | 1 cut(s) | 729 |
| BsrBI | CCGCTC | 1 cut(s) | 1450 |
| BsrDI | GCAATG | 3 cut(s) | 265, 441, 1668 |
| BsrI | ACTGG | 2 cut(s) | 1098, 1264 |
| BssECI | CCNNGG | 8 cut(s) | 39, 249, 269, 1055, 1349, 1524, 1558, 1619 |
| BssHII | GCGCGC | 1 cut(s) | 310 |
| BssMI | GATC | 7 cut(s) | 262, 292, 865, 901, 1564, 1585, 1873 |
| BssT1I | CCWWGG | 4 cut(s) | 249, 1055, 1349, 1524 |
| Bst2UI | CCWGG | 3 cut(s) | 271, 1254, 1620 |
| Bst4CI | ACNGT | 3 cut(s) | 80, 376, 1224 |
| Bst6I | CTCTTC | 6 cut(s) | 124, 381, 551, 1167, 1244, 1620 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 419 |
| BstBI | TTCGAA | 1 cut(s) | 729 |
| BstC8I | GCNNGC | 6 cut(s) | 286, 312, 399, 495, 705, 1448 |
| BstDSI | CCRYGG | 1 cut(s) | 39 |
| BstEII | GGTNACC | 1 cut(s) | 1514 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1059 |
| BstF5I | GGATG | 3 cut(s) | 547, 567, 1336 |
| BstFNI | CGCG | 2 cut(s) | 312, 1890 |
| BstH2I | RGCGCY | 1 cut(s) | 1089 |
| BstHHI | GCGC | 6 cut(s) | 187, 312, 314, 667, 1088, 1489 |
| BstKTI | GATC | 7 cut(s) | 265, 295, 868, 904, 1567, 1588, 1876 |
| BstMAI | GTCTC | 1 cut(s) | 383 |
| BstMBI | GATC | 7 cut(s) | 262, 292, 865, 901, 1564, 1585, 1873 |
| BstMCI | CGRYCG | 1 cut(s) | 1588 |
| BstNI | CCWGG | 3 cut(s) | 271, 1254, 1620 |
| BstNSI | RCATGY | 1 cut(s) | 1237 |
| BstPI | GGTNACC | 1 cut(s) | 1514 |
| BstSCI | CCNGG | 4 cut(s) | 269, 1252, 1558, 1618 |
| BstSFI | CTRYAG | 3 cut(s) | 693, 783, 948 |
| BstUI | CGCG | 2 cut(s) | 312, 1890 |
| BsuI | GTATCC | 2 cut(s) | 451, 1844 |
| BsuRI | GGCC | 7 cut(s) | 5, 47, 96, 470, 1133, 1388, 1583 |
| BtgI | CCRYGG | 1 cut(s) | 39 |
| BtsCI | GGATG | 3 cut(s) | 547, 567, 1336 |
| BtsIMutI | CAGTG | 1 cut(s) | 1105 |
| BtuMI | TCGCGA | 1 cut(s) | 1890 |
| BveI | ACCTGC | 2 cut(s) | 810, 941 |
| Cac8I | GCNNGC | 6 cut(s) | 286, 312, 399, 495, 705, 1448 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1259 |
| CfoI | GCGC | 6 cut(s) | 187, 312, 314, 667, 1088, 1489 |
| Cfr13I | GGNCC | 5 cut(s) | 95, 799, 1247, 1346, 1386 |
| CseI | GACGC | 1 cut(s) | 671 |
| Csp6I | GTAC | 1 cut(s) | 1666 |
| CviAII | CATG | 4 cut(s) | 677, 1234, 1370, 1765 |
| CviQI | GTAC | 1 cut(s) | 1666 |
| DpnI | GATC | 7 cut(s) | 264, 294, 867, 903, 1566, 1587, 1875 |
| DpnII | GATC | 7 cut(s) | 262, 292, 865, 901, 1564, 1585, 1873 |
| EaeI | YGGCCR | 2 cut(s) | 3, 1581 |
| Eam1104I | CTCTTC | 6 cut(s) | 124, 381, 551, 1167, 1244, 1620 |
| EarI | CTCTTC | 6 cut(s) | 124, 381, 551, 1167, 1244, 1620 |
| EciI | GGCGGA | 2 cut(s) | 40, 189 |
| Ecl136II | GAGCTC | 1 cut(s) | 764 |
| Eco130I | CCWWGG | 4 cut(s) | 249, 1055, 1349, 1524 |
| Eco147I | AGGCCT | 1 cut(s) | 1133 |
| Eco24I | GRGCYC | 2 cut(s) | 237, 766 |
| Eco47I | GGWCC | 3 cut(s) | 799, 1247, 1346 |
| Eco53kI | GAGCTC | 1 cut(s) | 764 |
| Eco57I | CTGAAG | 2 cut(s) | 1148, 1667 |
| Eco91I | GGTNACC | 1 cut(s) | 1514 |
| EcoICRI | GAGCTC | 1 cut(s) | 764 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1059 |
| EcoO109I | RGGNCCY | 1 cut(s) | 799 |
| EcoO65I | GGTNACC | 1 cut(s) | 1514 |
| EcoRI | GAATTC | 1 cut(s) | 1607 |
| EcoRII | CCWGG | 3 cut(s) | 269, 1252, 1618 |
| EcoT14I | CCWWGG | 4 cut(s) | 249, 1055, 1349, 1524 |
| EcoT22I | ATGCAT | 2 cut(s) | 22, 1438 |
| EcoT38I | GRGCYC | 2 cut(s) | 237, 766 |
| ErhI | CCWWGG | 4 cut(s) | 249, 1055, 1349, 1524 |
| FaeI | CATG | 4 cut(s) | 680, 1237, 1373, 1768 |
| FaqI | GGGAC | 2 cut(s) | 812, 1026 |
| FatI | CATG | 4 cut(s) | 676, 1233, 1369, 1764 |
| FauNDI | CATATG | 1 cut(s) | 16 |
| FbaI | TGATCA | 2 cut(s) | 262, 865 |
| FblI | GTMKAC | 3 cut(s) | 652, 685, 1899 |
| FokI | GGATG | 3 cut(s) | 554, 574, 1343 |
| FriOI | GRGCYC | 2 cut(s) | 237, 766 |
| FspBI | CTAG | 6 cut(s) | 494, 531, 713, 914, 944, 1278 |
| GlaI | GCGC | 6 cut(s) | 186, 311, 313, 666, 1087, 1488 |
| GsuI | CTGGAG | 3 cut(s) | 326, 1236, 1965 |
| HaeII | RGCGCY | 1 cut(s) | 1089 |
| HaeIII | GGCC | 7 cut(s) | 5, 47, 96, 470, 1133, 1388, 1583 |
| HapII | CCGG | 2 cut(s) | 219, 1560 |
| HgaI | GACGC | 1 cut(s) | 671 |
| HhaI | GCGC | 6 cut(s) | 187, 312, 314, 667, 1088, 1489 |
| Hin1II | CATG | 4 cut(s) | 680, 1237, 1373, 1768 |
| Hin6I | GCGC | 6 cut(s) | 185, 310, 312, 665, 1086, 1487 |
| HinP1I | GCGC | 6 cut(s) | 185, 310, 312, 665, 1086, 1487 |
| HincII | GTYRAC | 3 cut(s) | 653, 686, 1755 |
| HindII | GTYRAC | 3 cut(s) | 653, 686, 1755 |
| HinfI | GANTC | 4 cut(s) | 623, 892, 1034, 1571 |
| HpaII | CCGG | 2 cut(s) | 219, 1560 |
| HphI | GGTGA | 5 cut(s) | 388, 994, 1151, 1526, 1574 |
| Hpy166II | GTNNAC | 5 cut(s) | 653, 686, 958, 1755, 1900 |
| Hpy188I | TCNGA | 6 cut(s) | 897, 906, 1031, 1167, 1229, 1734 |
| Hpy188III | TCNNGA | 9 cut(s) | 296, 305, 539, 767, 1062, 1299, 1568, 1658, 1889 |
| Hpy8I | GTNNAC | 5 cut(s) | 653, 686, 958, 1755, 1900 |
| Hpy99I | CGWCG | 6 cut(s) | 95, 193, 654, 687, 690, 1796 |
| HpyCH4III | ACNGT | 3 cut(s) | 80, 376, 1224 |
| HpyCH4IV | ACGT | 2 cut(s) | 718, 1075 |
| HpyCH4V | TGCA | 8 cut(s) | 20, 434, 695, 752, 785, 950, 1436, 1940 |
| HpySE526I | ACGT | 2 cut(s) | 718, 1075 |
| Hsp92II | CATG | 4 cut(s) | 680, 1237, 1373, 1768 |
| HspAI | GCGC | 6 cut(s) | 185, 310, 312, 665, 1086, 1487 |
| Ksp22I | TGATCA | 2 cut(s) | 262, 865 |
| Kzo9I | GATC | 7 cut(s) | 262, 292, 865, 901, 1564, 1585, 1873 |
| LguI | GCTCTTC | 1 cut(s) | 1244 |
| LmnI | GCTCC | 6 cut(s) | 307, 368, 481, 700, 990, 1342 |
| LweI | GCATC | 3 cut(s) | 739, 1423, 1927 |
| MaeI | CTAG | 6 cut(s) | 494, 531, 713, 914, 944, 1278 |
| MaeII | ACGT | 2 cut(s) | 718, 1075 |
| MaeIII | GTNAC | 4 cut(s) | 934, 1357, 1395, 1514 |
| MalI | GATC | 7 cut(s) | 264, 294, 867, 903, 1566, 1587, 1875 |
| MbiI | CCGCTC | 1 cut(s) | 1450 |
| MboI | GATC | 7 cut(s) | 262, 292, 865, 901, 1564, 1585, 1873 |
| MhlI | GDGCHC | 2 cut(s) | 237, 766 |
| MlsI | TGGCCA | 1 cut(s) | 5 |
| MluCI | AATT | 9 cut(s) | 447, 517, 545, 724, 789, 1173, 1607, 1711, 1934 |
| MluNI | TGGCCA | 1 cut(s) | 5 |
| MlyI | GAGTC | 1 cut(s) | 1043 |
| MmeI | TCCRAC | 3 cut(s) | 99, 306, 697 |
| Mox20I | TGGCCA | 1 cut(s) | 5 |
| Mph1103I | ATGCAT | 2 cut(s) | 22, 1438 |
| MscI | TGGCCA | 1 cut(s) | 5 |
| MseI | TTAA | 3 cut(s) | 792, 1638, 1719 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1441 |
| Msp20I | TGGCCA | 1 cut(s) | 5 |
| MspA1I | CMGCKG | 4 cut(s) | 284, 1577, 1781, 1943 |
| MspI | CCGG | 2 cut(s) | 219, 1560 |
| MspR9I | CCNGG | 4 cut(s) | 271, 1254, 1560, 1620 |
| MvaI | CCWGG | 3 cut(s) | 271, 1254, 1620 |
| MvnI | CGCG | 2 cut(s) | 312, 1890 |
| NciI | CCSGG | 1 cut(s) | 1560 |
| NdeI | CATATG | 1 cut(s) | 16 |
| NdeII | GATC | 7 cut(s) | 262, 292, 865, 901, 1564, 1585, 1873 |
| NheI | GCTAGC | 1 cut(s) | 493 |
| NlaIII | CATG | 4 cut(s) | 680, 1237, 1373, 1768 |
| NlaIV | GGNNCC | 4 cut(s) | 195, 596, 800, 1706 |
| NmeAIII | GCCGAG | 1 cut(s) | 256 |
| NmuCI | GTSAC | 2 cut(s) | 1395, 1514 |
| NruI | TCGCGA | 1 cut(s) | 1890 |
| NsiI | ATGCAT | 2 cut(s) | 22, 1438 |
| NspI | RCATGY | 1 cut(s) | 1237 |
| NspV | TTCGAA | 1 cut(s) | 729 |
| PaqCI | CACCTGC | 1 cut(s) | 941 |
| PauI | GCGCGC | 1 cut(s) | 310 |
| PceI | AGGCCT | 1 cut(s) | 1133 |
| PciSI | GCTCTTC | 1 cut(s) | 1244 |
| PfeI | GAWTC | 3 cut(s) | 623, 892, 1571 |
| PflFI | GACNNNGTC | 1 cut(s) | 1532 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 604, 1259 |
| PfoI | TCCNGGA | 1 cut(s) | 1252 |
| Ple19I | CGATCG | 1 cut(s) | 1588 |
| PleI | GAGTC | 1 cut(s) | 1042 |
| PpsI | GAGTC | 1 cut(s) | 1042 |
| PpuMI | RGGWCCY | 1 cut(s) | 799 |
| Psp124BI | GAGCTC | 1 cut(s) | 766 |
| Psp5II | RGGWCCY | 1 cut(s) | 799 |
| Psp6I | CCWGG | 3 cut(s) | 269, 1252, 1618 |
| PspEI | GGTNACC | 1 cut(s) | 1514 |
| PspGI | CCWGG | 3 cut(s) | 269, 1252, 1618 |
| PspN4I | GGNNCC | 4 cut(s) | 195, 596, 800, 1706 |
| PspPI | GGNCC | 5 cut(s) | 95, 799, 1247, 1346, 1386 |
| PspPPI | RGGWCCY | 1 cut(s) | 799 |
| PstI | CTGCAG | 3 cut(s) | 697, 787, 952 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1259 |
| PsyI | GACNNNGTC | 1 cut(s) | 1532 |
| PteI | GCGCGC | 1 cut(s) | 310 |
| PvuI | CGATCG | 1 cut(s) | 1588 |
| PvuII | CAGCTG | 2 cut(s) | 1577, 1943 |
| RruI | TCGCGA | 1 cut(s) | 1890 |
| RsaI | GTAC | 1 cut(s) | 1667 |
| RsaNI | GTAC | 1 cut(s) | 1666 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1441 |
| SacI | GAGCTC | 1 cut(s) | 766 |
| SalI | GTCGAC | 2 cut(s) | 651, 684 |
| SapI | GCTCTTC | 1 cut(s) | 1244 |
| SaqAI | TTAA | 3 cut(s) | 792, 1638, 1719 |
| Sau3AI | GATC | 7 cut(s) | 262, 292, 865, 901, 1564, 1585, 1873 |
| Sau96I | GGNCC | 5 cut(s) | 95, 799, 1247, 1346, 1386 |
| SchI | GAGTC | 1 cut(s) | 1043 |
| ScrFI | CCNGG | 4 cut(s) | 271, 1254, 1560, 1620 |
| SduI | GDGCHC | 2 cut(s) | 237, 766 |
| SfaNI | GCATC | 3 cut(s) | 739, 1423, 1927 |
| SfcI | CTRYAG | 3 cut(s) | 693, 783, 948 |
| SfuI | TTCGAA | 1 cut(s) | 729 |
| SgrDI | CGTCGACG | 1 cut(s) | 684 |
| SinI | GGWCC | 3 cut(s) | 799, 1247, 1346 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1441 |
| SpeI | ACTAGT | 1 cut(s) | 913 |
| Sse9I | AATT | 9 cut(s) | 447, 517, 545, 724, 789, 1173, 1607, 1711, 1934 |
| SseBI | AGGCCT | 1 cut(s) | 1133 |
| SspI | AATATT | 1 cut(s) | 1008 |
| SspMI | CTAG | 6 cut(s) | 494, 531, 713, 914, 944, 1278 |
| SstI | GAGCTC | 1 cut(s) | 766 |
| StuI | AGGCCT | 1 cut(s) | 1133 |
| StyD4I | CCNGG | 4 cut(s) | 269, 1252, 1558, 1618 |
| StyI | CCWWGG | 4 cut(s) | 249, 1055, 1349, 1524 |
| TaaI | ACNGT | 3 cut(s) | 80, 376, 1224 |
| TaiI | ACGT | 2 cut(s) | 721, 1078 |
| TaqI | TCGA | 5 cut(s) | 291, 652, 685, 729, 1569 |
| TaqII | GACCGA | 1 cut(s) | 1805 |
| TasI | AATT | 9 cut(s) | 447, 517, 545, 724, 789, 1173, 1607, 1711, 1934 |
| TatI | WGTACW | 1 cut(s) | 1665 |
| TauI | GCSGC | 5 cut(s) | 38, 47, 205, 284, 1784 |
| TfiI | GAWTC | 3 cut(s) | 623, 892, 1571 |
| Tru1I | TTAA | 3 cut(s) | 792, 1638, 1719 |
| Tru9I | TTAA | 3 cut(s) | 792, 1638, 1719 |
| TscAI | CASTG | 1 cut(s) | 1105 |
| TseFI | GTSAC | 2 cut(s) | 1395, 1514 |
| Tsp45I | GTSAC | 2 cut(s) | 1395, 1514 |
| TspDTI | ATGAA | 8 cut(s) | 452, 558, 585, 1408, 1440, 1611, 1674, 1760 |
| TspGWI | ACGGA | 3 cut(s) | 703, 1414, 1697 |
| TspRI | CASTG | 1 cut(s) | 1105 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1532 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 604, 1259 |
| VpaK11BI | GGWCC | 3 cut(s) | 799, 1247, 1346 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1059 |
| XapI | RAATTY | 4 cut(s) | 517, 724, 1607, 1934 |
| XceI | RCATGY | 1 cut(s) | 1237 |
| XmiI | GTMKAC | 3 cut(s) | 652, 685, 1899 |
| XspI | CTAG | 6 cut(s) | 494, 531, 713, 914, 944, 1278 |
| Zsp2I | ATGCAT | 2 cut(s) | 22, 1438 |