ATPase family AAA domain-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G03060 AT5G16930 |
| fragaria_vesca | FvH4_7g33981 FvH4_7g33981 FvH4_7g33981 |
| malus_domestica | MD01G1236100.v1.1 MD07G1308800.v1.1 |
| prunus_persica | Prupe.2G326200_v2.0.a1 |
| pyrus_communis | pycom01g24410 pycom07g28090 |
| rosa_chinensis | RchiOBHm_Chr1g0384221 |
| rosa_laevigata | RLG00000026058 |
| rosa_multiflora | Rmu_sc0005139.1_g000003 Rmu_sc0014578.1_g000003 |
| rosa_roxburghii | Rroxscaffold_4G00276840 |
| rosa_rugosa | Rorug01G0445900 |
| rosa_samantha | Rh1AG471400 Rh1BG429200 Rh1CG441800 Rh1DG461900 |
| rosa_wichuraiana | Rw1G040110 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 878 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 1811 |
| Acc36I | ACCTGC | 2 cut(s) | 343, 878 |
| AccB1I | GGYRCC | 2 cut(s) | 269, 1126 |
| AccBSI | CCGCTC | 2 cut(s) | 634, 1357 |
| AccI | GTMKAC | 3 cut(s) | 747, 1022, 1803 |
| AccII | CGCG | 1 cut(s) | 267 |
| AccIII | TCCGGA | 1 cut(s) | 1611 |
| AclWI | GGATC | 2 cut(s) | 242, 846 |
| AcoI | YGGCCR | 1 cut(s) | 237 |
| AcsI | RAATTY | 2 cut(s) | 1514, 1857 |
| AcuI | CTGAAG | 4 cut(s) | 350, 741, 1055, 1117 |
| AfaI | GTAC | 1 cut(s) | 1574 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 998, 1166, 1167, 1432, 1526, 1527 |
| AgsI | TTSAA | 5 cut(s) | 146, 323, 505, 1514, 1624 |
| AhlI | ACTAGT | 1 cut(s) | 742 |
| AjnI | CCWGG | 3 cut(s) | 1525, 1600, 1740 |
| Alw21I | GWGCWC | 2 cut(s) | 703, 1396 |
| Alw26I | GTCTC | 1 cut(s) | 338 |
| Alw44I | GTGCAC | 1 cut(s) | 1392 |
| AlwI | GGATC | 2 cut(s) | 242, 846 |
| Ama87I | CYCGRG | 2 cut(s) | 223, 1591 |
| Aor13HI | TCCGGA | 1 cut(s) | 1611 |
| AoxI | GGCC | 6 cut(s) | 85, 120, 237, 375, 387, 1293 |
| ApaLI | GTGCAC | 1 cut(s) | 1392 |
| ApoI | RAATTY | 2 cut(s) | 1514, 1857 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 74, 106 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1619 |
| AspLEI | GCGC | 2 cut(s) | 267, 466 |
| AspS9I | GGNCC | 5 cut(s) | 86, 121, 1154, 1253, 1293 |
| AsuC2I | CCSGG | 4 cut(s) | 241, 752, 1161, 1467 |
| AsuHPI | GGTGA | 4 cut(s) | 931, 1058, 1433, 1481 |
| AvaI | CYCGRG | 2 cut(s) | 223, 1591 |
| AvaII | GGWCC | 2 cut(s) | 1154, 1253 |
| BaeGI | GKGCMC | 1 cut(s) | 1396 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1265, 1298 |
| BanI | GGYRCC | 2 cut(s) | 269, 1126 |
| BanII | GRGCYC | 2 cut(s) | 27, 184 |
| BauI | CACGAG | 1 cut(s) | 1277 |
| BbsI | GAAGAC | 1 cut(s) | 966 |
| Bbv12I | GWGCWC | 2 cut(s) | 703, 1396 |
| BccI | CCATC | 6 cut(s) | 475, 964, 1072, 1186, 1599, 1723 |
| BceAI | ACGGC | 2 cut(s) | 100, 139 |
| BciT130I | CCWGG | 3 cut(s) | 1527, 1602, 1742 |
| BclI | TGATCA | 1 cut(s) | 802 |
| BcnI | CCSGG | 4 cut(s) | 241, 752, 1161, 1467 |
| BcoDI | GTCTC | 1 cut(s) | 338 |
| BcuI | ACTAGT | 1 cut(s) | 742 |
| BfaI | CTAG | 6 cut(s) | 20, 449, 716, 743, 881, 1185 |
| BfmI | CTRYAG | 1 cut(s) | 885 |
| BfuAI | ACCTGC | 2 cut(s) | 343, 878 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 93 |
| BlpI | GCTNAGC | 2 cut(s) | 453, 1818 |
| Bme1390I | CCNGG | 7 cut(s) | 241, 752, 1161, 1467, 1527, 1602, 1742 |
| Bme18I | GGWCC | 2 cut(s) | 1154, 1253 |
| BmeT110I | CYCGRG | 2 cut(s) | 223, 1591 |
| BmgT120I | GGNCC | 5 cut(s) | 86, 121, 1154, 1253, 1293 |
| BmiI | GGNNCC | 5 cut(s) | 123, 183, 271, 1128, 1610 |
| BmrFI | CCNGG | 7 cut(s) | 241, 752, 1161, 1467, 1527, 1602, 1742 |
| BmrI | ACTGGG | 1 cut(s) | 121 |
| BmsI | GCATC | 4 cut(s) | 295, 466, 507, 1831 |
| BmuI | ACTGGG | 1 cut(s) | 121 |
| BpiI | GAAGAC | 1 cut(s) | 966 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1366, 1398 |
| BpmI | CTGGAG | 1 cut(s) | 281 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 453, 1818 |
| BpuEI | CTTGAG | 1 cut(s) | 384 |
| BpuMI | CCSGG | 4 cut(s) | 241, 752, 1161, 1467 |
| BsaJI | CCNNGG | 5 cut(s) | 117, 224, 992, 1431, 1526 |
| BsaWI | WCCGGW | 1 cut(s) | 1611 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 365, 395, 1224, 1254 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 998, 1166, 1167, 1432, 1526, 1527 |
| Bse1I | ACTGG | 3 cut(s) | 127, 1423, 1426 |
| Bse3DI | GCAATG | 1 cut(s) | 220 |
| BseAI | TCCGGA | 1 cut(s) | 1611 |
| BseBI | CCWGG | 3 cut(s) | 1527, 1602, 1742 |
| BseDI | CCNNGG | 5 cut(s) | 117, 224, 992, 1431, 1526 |
| BseGI | GGATG | 5 cut(s) | 310, 522, 956, 1243, 1610 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 998, 1166, 1167, 1432, 1526, 1527 |
| BseMI | GCAATG | 1 cut(s) | 220 |
| BseMII | CTCAG | 6 cut(s) | 402, 467, 491, 636, 1664, 1809 |
| BseNI | ACTGG | 3 cut(s) | 127, 1423, 1426 |
| BseRI | GAGGAG | 5 cut(s) | 174, 177, 180, 183, 186 |
| BseSI | GKGCMC | 1 cut(s) | 1396 |
| BseX3I | CGGCCG | 1 cut(s) | 237 |
| BseYI | CCCAGC | 1 cut(s) | 176 |
| Bsh1236I | CGCG | 1 cut(s) | 267 |
| Bsh1285I | CGRYCG | 1 cut(s) | 240 |
| BshFI | GGCC | 6 cut(s) | 87, 122, 239, 377, 389, 1295 |
| BshNI | GGYRCC | 2 cut(s) | 269, 1126 |
| BsiEI | CGRYCG | 1 cut(s) | 240 |
| BsiHKAI | GWGCWC | 2 cut(s) | 703, 1396 |
| BsiHKCI | CYCGRG | 2 cut(s) | 223, 1591 |
| BsiSI | CCGG | 6 cut(s) | 167, 240, 751, 1161, 1467, 1612 |
| BslFI | GGGAC | 3 cut(s) | 831, 963, 1449 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 998, 1166, 1167, 1432, 1526, 1527 |
| BsmAI | GTCTC | 1 cut(s) | 338 |
| BsmBI | CGTCTC | 1 cut(s) | 338 |
| BsmFI | GGGAC | 3 cut(s) | 831, 963, 1449 |
| BsnI | GGCC | 6 cut(s) | 87, 122, 239, 377, 389, 1295 |
| BsoBI | CYCGRG | 2 cut(s) | 223, 1591 |
| Bsp1286I | GDGCHC | 4 cut(s) | 27, 184, 703, 1396 |
| Bsp13I | TCCGGA | 1 cut(s) | 1611 |
| Bsp143I | GATC | 5 cut(s) | 247, 802, 838, 1471, 1492 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 453, 1818 |
| BspANI | GGCC | 6 cut(s) | 87, 122, 239, 377, 389, 1295 |
| BspCNI | CTCAG | 6 cut(s) | 403, 466, 490, 637, 1665, 1810 |
| BspEI | TCCGGA | 1 cut(s) | 1611 |
| BspFNI | CGCG | 1 cut(s) | 267 |
| BspLI | GGNNCC | 5 cut(s) | 123, 183, 271, 1128, 1610 |
| BspMAI | CTGCAG | 1 cut(s) | 889 |
| BspMI | ACCTGC | 2 cut(s) | 343, 878 |
| BspPI | GGATC | 2 cut(s) | 242, 846 |
| BspQI | GCTCTTC | 2 cut(s) | 1151, 1410 |
| BspT107I | GGYRCC | 2 cut(s) | 269, 1126 |
| BsrBI | CCGCTC | 2 cut(s) | 634, 1357 |
| BsrDI | GCAATG | 1 cut(s) | 220 |
| BsrI | ACTGG | 3 cut(s) | 127, 1423, 1426 |
| BssECI | CCNNGG | 5 cut(s) | 117, 224, 992, 1431, 1526 |
| BssMI | GATC | 5 cut(s) | 247, 802, 838, 1471, 1492 |
| BssSI | CACGAG | 1 cut(s) | 1277 |
| BssT1I | CCWWGG | 3 cut(s) | 117, 992, 1431 |
| Bst2BI | CACGAG | 1 cut(s) | 1277 |
| Bst2UI | CCWGG | 3 cut(s) | 1527, 1602, 1742 |
| Bst4CI | ACNGT | 1 cut(s) | 1463 |
| Bst6I | CTCTTC | 6 cut(s) | 336, 506, 717, 1074, 1151, 1410 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1400 |
| BstC8I | GCNNGC | 6 cut(s) | 396, 487, 522, 582, 1355, 1735 |
| BstDEI | CTNAG | 8 cut(s) | 300, 411, 453, 477, 645, 1673, 1689, 1818 |
| BstEII | GGTNACC | 1 cut(s) | 1421 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 996 |
| BstF5I | GGATG | 5 cut(s) | 310, 522, 956, 1243, 1610 |
| BstFNI | CGCG | 1 cut(s) | 267 |
| BstHHI | GCGC | 2 cut(s) | 267, 466 |
| BstKTI | GATC | 5 cut(s) | 250, 805, 841, 1474, 1495 |
| BstMAI | GTCTC | 1 cut(s) | 338 |
| BstMBI | GATC | 5 cut(s) | 247, 802, 838, 1471, 1492 |
| BstMCI | CGRYCG | 1 cut(s) | 240 |
| BstNI | CCWGG | 3 cut(s) | 1527, 1602, 1742 |
| BstNSI | RCATGY | 1 cut(s) | 1144 |
| BstPI | GGTNACC | 1 cut(s) | 1421 |
| BstSCI | CCNGG | 7 cut(s) | 239, 750, 1159, 1465, 1525, 1600, 1740 |
| BstSFI | CTRYAG | 1 cut(s) | 885 |
| BstSLI | GKGCMC | 1 cut(s) | 1396 |
| BstUI | CGCG | 1 cut(s) | 267 |
| BstV2I | GAAGAC | 1 cut(s) | 966 |
| BstZI | CGGCCG | 1 cut(s) | 237 |
| BsuRI | GGCC | 6 cut(s) | 87, 122, 239, 377, 389, 1295 |
| BtsCI | GGATG | 5 cut(s) | 310, 522, 956, 1243, 1610 |
| BtsIMutI | CAGTG | 2 cut(s) | 1220, 1416 |
| BveI | ACCTGC | 2 cut(s) | 343, 878 |
| Cac8I | GCNNGC | 6 cut(s) | 396, 487, 522, 582, 1355, 1735 |
| CfoI | GCGC | 2 cut(s) | 267, 466 |
| Cfr13I | GGNCC | 5 cut(s) | 86, 121, 1154, 1253, 1293 |
| CseI | GACGC | 2 cut(s) | 1349, 1726 |
| Csp6I | GTAC | 1 cut(s) | 1573 |
| CviAII | CATG | 4 cut(s) | 391, 704, 1141, 1372 |
| CviQI | GTAC | 1 cut(s) | 1573 |
| DdeI | CTNAG | 8 cut(s) | 300, 411, 453, 477, 645, 1673, 1689, 1818 |
| DpnI | GATC | 5 cut(s) | 249, 804, 840, 1473, 1494 |
| DpnII | GATC | 5 cut(s) | 247, 802, 838, 1471, 1492 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1811 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1811 |
| EaeI | YGGCCR | 1 cut(s) | 237 |
| EagI | CGGCCG | 1 cut(s) | 237 |
| Eam1104I | CTCTTC | 6 cut(s) | 336, 506, 717, 1074, 1151, 1410 |
| EarI | CTCTTC | 6 cut(s) | 336, 506, 717, 1074, 1151, 1410 |
| EciI | GGCGGA | 2 cut(s) | 37, 189 |
| EclXI | CGGCCG | 1 cut(s) | 237 |
| Eco130I | CCWWGG | 3 cut(s) | 117, 992, 1431 |
| Eco24I | GRGCYC | 2 cut(s) | 27, 184 |
| Eco32I | GATATC | 1 cut(s) | 289 |
| Eco47I | GGWCC | 2 cut(s) | 1154, 1253 |
| Eco52I | CGGCCG | 1 cut(s) | 237 |
| Eco57I | CTGAAG | 4 cut(s) | 350, 741, 1055, 1117 |
| Eco88I | CYCGRG | 2 cut(s) | 223, 1591 |
| Eco91I | GGTNACC | 1 cut(s) | 1421 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 996 |
| EcoO109I | RGGNCCY | 1 cut(s) | 121 |
| EcoO65I | GGTNACC | 1 cut(s) | 1421 |
| EcoRI | GAATTC | 1 cut(s) | 1514 |
| EcoRII | CCWGG | 3 cut(s) | 1525, 1600, 1740 |
| EcoRV | GATATC | 1 cut(s) | 289 |
| EcoT14I | CCWWGG | 3 cut(s) | 117, 992, 1431 |
| EcoT38I | GRGCYC | 2 cut(s) | 27, 184 |
| ErhI | CCWWGG | 3 cut(s) | 117, 992, 1431 |
| Esp3I | CGTCTC | 1 cut(s) | 338 |
| FaeI | CATG | 4 cut(s) | 394, 707, 1144, 1375 |
| FaqI | GGGAC | 3 cut(s) | 831, 963, 1449 |
| FatI | CATG | 4 cut(s) | 390, 703, 1140, 1371 |
| FauI | CCCGC | 2 cut(s) | 264, 627 |
| FauNDI | CATATG | 1 cut(s) | 13 |
| FbaI | TGATCA | 1 cut(s) | 802 |
| FblI | GTMKAC | 3 cut(s) | 747, 1022, 1803 |
| FokI | GGATG | 5 cut(s) | 317, 529, 943, 1250, 1617 |
| FriOI | GRGCYC | 2 cut(s) | 27, 184 |
| FspBI | CTAG | 6 cut(s) | 20, 449, 716, 743, 881, 1185 |
| GlaI | GCGC | 2 cut(s) | 266, 465 |
| GsaI | CCCAGC | 1 cut(s) | 180 |
| GsuI | CTGGAG | 1 cut(s) | 281 |
| HaeIII | GGCC | 6 cut(s) | 87, 122, 239, 377, 389, 1295 |
| HapII | CCGG | 6 cut(s) | 167, 240, 751, 1161, 1467, 1612 |
| HgaI | GACGC | 2 cut(s) | 1349, 1726 |
| HhaI | GCGC | 2 cut(s) | 267, 466 |
| Hin1II | CATG | 4 cut(s) | 394, 707, 1144, 1375 |
| Hin6I | GCGC | 2 cut(s) | 265, 464 |
| HinP1I | GCGC | 2 cut(s) | 265, 464 |
| HincII | GTYRAC | 1 cut(s) | 730 |
| HindII | GTYRAC | 1 cut(s) | 730 |
| HinfI | GANTC | 5 cut(s) | 161, 560, 971, 1478, 1589 |
| HpaI | GTTAAC | 1 cut(s) | 730 |
| HpaII | CCGG | 6 cut(s) | 167, 240, 751, 1161, 1467, 1612 |
| HphI | GGTGA | 4 cut(s) | 931, 1058, 1433, 1481 |
| Hpy166II | GTNNAC | 6 cut(s) | 730, 748, 937, 1023, 1394, 1804 |
| Hpy188III | TCNNGA | 6 cut(s) | 251, 1206, 1475, 1565, 1612, 1793 |
| Hpy8I | GTNNAC | 6 cut(s) | 730, 748, 937, 1023, 1394, 1804 |
| Hpy99I | CGWCG | 3 cut(s) | 86, 591, 624 |
| HpyAV | CCTTC | 4 cut(s) | 144, 686, 902, 1141 |
| HpyCH4III | ACNGT | 1 cut(s) | 1463 |
| HpyCH4IV | ACGT | 3 cut(s) | 619, 655, 1012 |
| HpyF3I | CTNAG | 8 cut(s) | 300, 411, 453, 477, 645, 1673, 1689, 1818 |
| HpySE526I | ACGT | 3 cut(s) | 619, 655, 1012 |
| Hsp92II | CATG | 4 cut(s) | 394, 707, 1144, 1375 |
| HspAI | GCGC | 2 cut(s) | 265, 464 |
| Kpn2I | TCCGGA | 1 cut(s) | 1611 |
| Ksp22I | TGATCA | 1 cut(s) | 802 |
| KspAI | GTTAAC | 1 cut(s) | 730 |
| Kzo9I | GATC | 5 cut(s) | 247, 802, 838, 1471, 1492 |
| LguI | GCTCTTC | 2 cut(s) | 1151, 1410 |
| LmnI | GCTCC | 5 cut(s) | 187, 262, 577, 927, 1249 |
| LweI | GCATC | 4 cut(s) | 295, 466, 507, 1831 |
| MaeI | CTAG | 6 cut(s) | 20, 449, 716, 743, 881, 1185 |
| MaeII | ACGT | 3 cut(s) | 619, 655, 1012 |
| MaeIII | GTNAC | 4 cut(s) | 871, 1264, 1302, 1421 |
| MalI | GATC | 5 cut(s) | 249, 804, 840, 1473, 1494 |
| MbiI | CCGCTC | 2 cut(s) | 634, 1357 |
| MboI | GATC | 5 cut(s) | 247, 802, 838, 1471, 1492 |
| MfeI | CAATTG | 1 cut(s) | 678 |
| MhlI | GDGCHC | 4 cut(s) | 27, 184, 703, 1396 |
| MluCI | AATT | 6 cut(s) | 678, 848, 1514, 1716, 1765, 1857 |
| MlyI | GAGTC | 3 cut(s) | 155, 980, 1583 |
| MmeI | TCCRAC | 1 cut(s) | 183 |
| MroI | TCCGGA | 1 cut(s) | 1611 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1619 |
| MseI | TTAA | 5 cut(s) | 384, 729, 1545, 1581, 1861 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1348 |
| MspA1I | CMGCKG | 5 cut(s) | 41, 259, 1484, 1685, 1847 |
| MspI | CCGG | 6 cut(s) | 167, 240, 751, 1161, 1467, 1612 |
| MspR9I | CCNGG | 7 cut(s) | 241, 752, 1161, 1467, 1527, 1602, 1742 |
| MunI | CAATTG | 1 cut(s) | 678 |
| MvaI | CCWGG | 3 cut(s) | 1527, 1602, 1742 |
| MvnI | CGCG | 1 cut(s) | 267 |
| NciI | CCSGG | 4 cut(s) | 241, 752, 1161, 1467 |
| NdeI | CATATG | 1 cut(s) | 13 |
| NdeII | GATC | 5 cut(s) | 247, 802, 838, 1471, 1492 |
| NlaIII | CATG | 4 cut(s) | 394, 707, 1144, 1375 |
| NlaIV | GGNNCC | 5 cut(s) | 123, 183, 271, 1128, 1610 |
| NmeAIII | GCCGAG | 1 cut(s) | 403 |
| NmuCI | GTSAC | 3 cut(s) | 871, 1302, 1421 |
| NspI | RCATGY | 1 cut(s) | 1144 |
| PaqCI | CACCTGC | 1 cut(s) | 878 |
| PciSI | GCTCTTC | 2 cut(s) | 1151, 1410 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1619 |
| PfeI | GAWTC | 2 cut(s) | 560, 1478 |
| PflFI | GACNNNGTC | 1 cut(s) | 1439 |
| PfoI | TCCNGGA | 1 cut(s) | 1159 |
| PleI | GAGTC | 3 cut(s) | 155, 979, 1583 |
| PpsI | GAGTC | 3 cut(s) | 155, 979, 1583 |
| Psp6I | CCWGG | 3 cut(s) | 1525, 1600, 1740 |
| PspEI | GGTNACC | 1 cut(s) | 1421 |
| PspFI | CCCAGC | 1 cut(s) | 176 |
| PspGI | CCWGG | 3 cut(s) | 1525, 1600, 1740 |
| PspN4I | GGNNCC | 5 cut(s) | 123, 183, 271, 1128, 1610 |
| PspPI | GGNCC | 5 cut(s) | 86, 121, 1154, 1253, 1293 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1352, 1384 |
| PstI | CTGCAG | 1 cut(s) | 889 |
| PsyI | GACNNNGTC | 1 cut(s) | 1439 |
| PvuII | CAGCTG | 3 cut(s) | 41, 1484, 1847 |
| RsaI | GTAC | 1 cut(s) | 1574 |
| RsaNI | GTAC | 1 cut(s) | 1573 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1348 |
| SapI | GCTCTTC | 2 cut(s) | 1151, 1410 |
| SaqAI | TTAA | 5 cut(s) | 384, 729, 1545, 1581, 1861 |
| Sau3AI | GATC | 5 cut(s) | 247, 802, 838, 1471, 1492 |
| Sau96I | GGNCC | 5 cut(s) | 86, 121, 1154, 1253, 1293 |
| SchI | GAGTC | 3 cut(s) | 155, 980, 1583 |
| ScrFI | CCNGG | 7 cut(s) | 241, 752, 1161, 1467, 1527, 1602, 1742 |
| SduI | GDGCHC | 4 cut(s) | 27, 184, 703, 1396 |
| SfaNI | GCATC | 4 cut(s) | 295, 466, 507, 1831 |
| SfcI | CTRYAG | 1 cut(s) | 885 |
| SinI | GGWCC | 2 cut(s) | 1154, 1253 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1348 |
| SmlI | CTYRAG | 1 cut(s) | 399 |
| SmoI | CTYRAG | 1 cut(s) | 399 |
| SpeI | ACTAGT | 1 cut(s) | 742 |
| Sse9I | AATT | 6 cut(s) | 678, 848, 1514, 1716, 1765, 1857 |
| SspI | AATATT | 1 cut(s) | 945 |
| SspMI | CTAG | 6 cut(s) | 20, 449, 716, 743, 881, 1185 |
| StyD4I | CCNGG | 7 cut(s) | 239, 750, 1159, 1465, 1525, 1600, 1740 |
| StyI | CCWWGG | 3 cut(s) | 117, 992, 1431 |
| TaaI | ACNGT | 1 cut(s) | 1463 |
| TaiI | ACGT | 3 cut(s) | 622, 658, 1015 |
| TaqI | TCGA | 2 cut(s) | 246, 586 |
| TasI | AATT | 6 cut(s) | 678, 848, 1514, 1716, 1765, 1857 |
| TatI | WGTACW | 1 cut(s) | 1572 |
| TauI | GCSGC | 5 cut(s) | 38, 154, 173, 596, 1688 |
| TfiI | GAWTC | 2 cut(s) | 560, 1478 |
| Tru1I | TTAA | 5 cut(s) | 384, 729, 1545, 1581, 1861 |
| Tru9I | TTAA | 5 cut(s) | 384, 729, 1545, 1581, 1861 |
| TscAI | CASTG | 2 cut(s) | 1227, 1423 |
| TseFI | GTSAC | 3 cut(s) | 871, 1302, 1421 |
| Tsp45I | GTSAC | 3 cut(s) | 871, 1302, 1421 |
| TspDTI | ATGAA | 7 cut(s) | 507, 720, 1315, 1347, 1518, 1551, 1664 |
| TspGWI | ACGGA | 2 cut(s) | 851, 1713 |
| TspRI | CASTG | 2 cut(s) | 1227, 1423 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1439 |
| VneI | GTGCAC | 1 cut(s) | 1392 |
| VpaK11BI | GGWCC | 2 cut(s) | 1154, 1253 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 996 |
| XapI | RAATTY | 2 cut(s) | 1514, 1857 |
| XceI | RCATGY | 1 cut(s) | 1144 |
| XmiI | GTMKAC | 3 cut(s) | 747, 1022, 1803 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1619 |
| XspI | CTAG | 6 cut(s) | 20, 449, 716, 743, 881, 1185 |