Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0016530

Physical Location & Seq

Genomic Coordinates Forward (+)

21392433 .. 21394207

Gene Structure 1775 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGAGTTTCCAAGATCTCGAGGCTGGTTCTTCTCCCCAACAGCAACACCAACAACGACGACCTTTCGTTTACTCGAATGCGATTCAGAACCAGCAGCAAAATCCAAGTCAAAATCTTTACGAGCCGTCCCAGGCCCTGTCTGCCGGGATTTTCCAAATCAACACCGCCGTATCCACTTTTTACCGCCTCGTCAATTCCCTCGGCACCCCCAGAGACACCTTTCAACTCCGAGACAAGCTGCATAAGACAAGGGCGCATATTGGGCAGTTGGTGAAAGATACTTCTCAAAAACTCAAGCAAGCTAGTGAAACCGATCACCATGCCCAAGTTACTGTTGTCAAGAAGATTGCGGATGCTAAGCTTGCAAAGGATTTCCAGGCCGTACTTAAAGAATTCCAGAAGGCTCAGAGGCTTGCAGCTGAAAGGGAAACAACATATGCTCCCTTTGTTCCAAAAGATGTTCTTCCATCCAGTTATCCTGCCCATGAGCAGGAGATGAGTTCTTCTAGGAGTTCTAAACACCAAGCTCTTCTTCTAGAATCAAAAAGACAAGAGGTTGTACTTGCAGACAATGAGATTGCATTCAATGAAGCCATTATTGAAGAAAGGGAGCAAGGGATCCAAGAAATTCAACAACAGATCAGCGAGGTTAATGAGATTTTCAAAGATCTAGCTGTCCTGGTCCATCGATCAAGGAGCTATAATCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005798 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0006892 GO:0006896 GO:0006906 GO:0006996 GO:0007034 GO:0008104 GO:0008150 GO:0009987 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0016050 GO:0016192 GO:0022406 GO:0030133 GO:0030135 GO:0030136 GO:0030140 GO:0031201 GO:0031224 GO:0031410 GO:0031982 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0045184 GO:0045324 GO:0046907 GO:0048193 GO:0048278 GO:0048284 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051649 GO:0061024 GO:0061025 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0072594 GO:0072665 GO:0072666 GO:0090174 GO:0097708 GO:0098796 GO:0140056

KEGG Pathways

Metabolic & Signaling

ko04130 ko04145 map04130 map04145

Pfam Domains

Protein Families

SNARE Syntaxin Syntaxin_2

Protein Analysis

237

Amino Acids

26.91

Weight (kDa)

7.96

Isoelectric Point (pI)

60.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Syntaxin_2	PF14523	43 - 177	4.2e-35	Syntaxin-like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0016530)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16830
fragaria_vesca	FvH4_7g34071
malus_domestica	MD01G1237000.v1.1 MD07G1309600.v1.1
prunus_persica	Prupe.2G327300_v2.0.a1
pyrus_communis	pycom01g24480 pycom07g28160
rosa_chinensis	RchiOBHm_Chr1g0384351
rosa_laevigata	RLG00000026046
rosa_multiflora	Rmu_sc0016737.1_g000006
rosa_roxburghii	Rroxscaffold_4G00276750
rosa_rugosa	Rorug01G0447000
rosa_samantha	Rh1CG443100
rosa_wichuraiana	Rw1G040020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	203
AciI	CCGC	3 cut(s)	165, 184, 350
AclWI	GGATC	2 cut(s)	613, 626
AcsI	RAATTY	2 cut(s)	392, 627
AfaI	GTAC	2 cut(s)	384, 561
AfiI	CCNNNNNNNGG	1 cut(s)	490
AgsI	TTSAA	5 cut(s)	224, 586, 602, 632, 664
AjnI	CCWGG	3 cut(s)	129, 375, 678
AjuI	GAANNNNNNNTTGG	2 cut(s)	516, 548
AluBI	AGCT	7 cut(s)	238, 302, 361, 419, 527, 674, 699
AluI	AGCT	7 cut(s)	238, 302, 361, 419, 527, 674, 699
Alw26I	GTCTC	2 cut(s)	207, 225
AlwI	GGATC	2 cut(s)	613, 626
AlwNI	CAGNNNCTG	1 cut(s)	136
Ama87I	CYCGRG	1 cut(s)	17
AoxI	GGCC	2 cut(s)	132, 378
ApeKI	GCWGC	3 cut(s)	94, 238, 416
ApoI	RAATTY	2 cut(s)	392, 627
ArsI	GACNNNNNNTTYG	2 cut(s)	91, 123
AspLEI	GCGC	1 cut(s)	256
AspS9I	GGNCC	2 cut(s)	133, 682
AsuC2I	CCSGG	1 cut(s)	145
AsuHPI	GGTGA	2 cut(s)	283, 308
AvaI	CYCGRG	1 cut(s)	17
AvaII	GGWCC	1 cut(s)	682
BaeI	ACNNNNGTAYC	2 cut(s)	153, 186
BamHI	GGATCC	1 cut(s)	618
BanI	GGYRCC	1 cut(s)	203
BbvI	GCAGC	3 cut(s)	106, 225, 428
BccI	CCATC	2 cut(s)	475, 693
BceAI	ACGGC	3 cut(s)	109, 152, 365
BcgI	CGANNNNNNTGC	2 cut(s)	302, 336
BciT130I	CCWGG	3 cut(s)	131, 377, 680
BciVI	GTATCC	1 cut(s)	181
BcnI	CCSGG	1 cut(s)	145
BcoDI	GTCTC	2 cut(s)	207, 225
BfaI	CTAG	4 cut(s)	303, 507, 536, 671
BfuI	GTATCC	1 cut(s)	181
BglII	AGATCT	2 cut(s)	13, 667
BisI	GCNGC	3 cut(s)	95, 239, 417
BlpI	GCTNAGC	1 cut(s)	357
BlsI	GCNGC	3 cut(s)	96, 240, 418
Bme1390I	CCNGG	4 cut(s)	131, 145, 377, 680
Bme18I	GGWCC	1 cut(s)	682
BmeT110I	CYCGRG	1 cut(s)	17
BmgT120I	GGNCC	2 cut(s)	133, 682
BmiI	GGNNCC	2 cut(s)	205, 620
BmrFI	CCNGG	4 cut(s)	131, 145, 377, 680
BmsI	GCATC	1 cut(s)	343
Bpu1102I	GCTNAGC	1 cut(s)	357
BpuEI	CTTGAG	1 cut(s)	278
BpuMI	CCSGG	1 cut(s)	145
Bsa29I	ATCGAT	2 cut(s)	688, 706
BsaJI	CCNNGG	2 cut(s)	129, 199
BsaXI	ACNNNNNCTCC	2 cut(s)	424, 454
Bsc4I	CCNNNNNNNGG	1 cut(s)	490
Bse1I	ACTGG	1 cut(s)	471
BseBI	CCWGG	3 cut(s)	131, 377, 680
BseCI	ATCGAT	2 cut(s)	688, 706
BseDI	CCNNGG	2 cut(s)	129, 199
BseGI	GGATG	2 cut(s)	358, 467
BseLI	CCNNNNNNNGG	1 cut(s)	490
BseMII	CTCAG	1 cut(s)	419
BseNI	ACTGG	1 cut(s)	471
BseXI	GCAGC	3 cut(s)	106, 225, 428
BshFI	GGCC	2 cut(s)	134, 380
BshNI	GGYRCC	1 cut(s)	203
BshVI	ATCGAT	2 cut(s)	688, 706
BsiHKCI	CYCGRG	1 cut(s)	17
BsiSI	CCGG	1 cut(s)	144
BslFI	GGGAC	1 cut(s)	112
BslI	CCNNNNNNNGG	1 cut(s)	490
BsmAI	GTCTC	2 cut(s)	207, 225
BsmFI	GGGAC	1 cut(s)	112
BsmI	GAATGC	2 cut(s)	82, 581
BsnI	GGCC	2 cut(s)	134, 380
BsoBI	CYCGRG	1 cut(s)	17
Bsp143I	GATC	6 cut(s)	13, 313, 618, 639, 667, 689
Bsp1720I	GCTNAGC	1 cut(s)	357
BspACI	CCGC	3 cut(s)	165, 184, 350
BspANI	GGCC	2 cut(s)	134, 380
BspCNI	CTCAG	1 cut(s)	418
BspDI	ATCGAT	2 cut(s)	688, 706
BspLI	GGNNCC	2 cut(s)	205, 620
BspPI	GGATC	2 cut(s)	613, 626
BspQI	GCTCTTC	1 cut(s)	534
BspT107I	GGYRCC	1 cut(s)	203
BsrI	ACTGG	1 cut(s)	471
BssECI	CCNNGG	2 cut(s)	129, 199
BssMI	GATC	6 cut(s)	13, 313, 618, 639, 667, 689
Bst2UI	CCWGG	3 cut(s)	131, 377, 680
Bst4CI	ACNGT	1 cut(s)	334
Bst6I	CTCTTC	1 cut(s)	534
BstC8I	GCNNGC	3 cut(s)	300, 363, 414
BstDEI	CTNAG	2 cut(s)	357, 405
BstF5I	GGATG	2 cut(s)	358, 467
BstHHI	GCGC	1 cut(s)	256
BstKTI	GATC	6 cut(s)	16, 316, 621, 642, 670, 692
BstMAI	GTCTC	2 cut(s)	207, 225
BstMBI	GATC	6 cut(s)	13, 313, 618, 639, 667, 689
BstMWI	GCNNNNNNNGC	3 cut(s)	140, 262, 362
BstNI	CCWGG	3 cut(s)	131, 377, 680
BstSCI	CCNGG	4 cut(s)	129, 143, 375, 678
BstV1I	GCAGC	3 cut(s)	106, 225, 428
BstX2I	RGATCY	3 cut(s)	13, 618, 667
BstYI	RGATCY	3 cut(s)	13, 618, 667
Bsu15I	ATCGAT	2 cut(s)	688, 706
BsuI	GTATCC	1 cut(s)	181
BsuRI	GGCC	2 cut(s)	134, 380
BsuTUI	ATCGAT	2 cut(s)	688, 706
BtsCI	GGATG	2 cut(s)	358, 467
Cac8I	GCNNGC	3 cut(s)	300, 363, 414
CaiI	CAGNNNCTG	1 cut(s)	136
CfoI	GCGC	1 cut(s)	256
Cfr13I	GGNCC	2 cut(s)	133, 682
ClaI	ATCGAT	2 cut(s)	688, 706
Csp6I	GTAC	2 cut(s)	383, 560
CviAII	CATG	2 cut(s)	320, 485
CviQI	GTAC	2 cut(s)	383, 560
DdeI	CTNAG	2 cut(s)	357, 405
DpnI	GATC	6 cut(s)	15, 315, 620, 641, 669, 691
DpnII	GATC	6 cut(s)	13, 313, 618, 639, 667, 689
Eam1104I	CTCTTC	1 cut(s)	534
EarI	CTCTTC	1 cut(s)	534
Eco47I	GGWCC	1 cut(s)	682
Eco88I	CYCGRG	1 cut(s)	17
EcoO109I	RGGNCCY	1 cut(s)	133
EcoRI	GAATTC	1 cut(s)	392
EcoRII	CCWGG	3 cut(s)	129, 375, 678
FaeI	CATG	2 cut(s)	323, 488
FaiI	YATR	7 cut(s)	243, 258, 321, 436, 438, 486, 702
FalI	AAGNNNNNCTT	4 cut(s)	447, 479, 516, 548
FaqI	GGGAC	1 cut(s)	112
FatI	CATG	2 cut(s)	319, 484
FauNDI	CATATG	1 cut(s)	436
Fnu4HI	GCNGC	3 cut(s)	95, 239, 417
FokI	GGATG	2 cut(s)	365, 454
Fsp4HI	GCNGC	3 cut(s)	95, 239, 417
FspBI	CTAG	4 cut(s)	303, 507, 536, 671
GlaI	GCGC	1 cut(s)	255
GluI	GCNGC	3 cut(s)	95, 239, 417
HaeIII	GGCC	2 cut(s)	134, 380
HapII	CCGG	1 cut(s)	144
HhaI	GCGC	1 cut(s)	256
Hin1II	CATG	2 cut(s)	323, 488
Hin6I	GCGC	1 cut(s)	254
HinP1I	GCGC	1 cut(s)	254
HindIII	AAGCTT	1 cut(s)	359
HinfI	GANTC	2 cut(s)	82, 539
HpaII	CCGG	1 cut(s)	144
HphI	GGTGA	2 cut(s)	283, 308
Hpy166II	GTNNAC	1 cut(s)	70
Hpy188I	TCNGA	3 cut(s)	87, 230, 408
Hpy188III	TCNNGA	4 cut(s)	17, 340, 397, 536
Hpy8I	GTNNAC	1 cut(s)	70
Hpy99I	CGWCG	1 cut(s)	60
HpyAV	CCTTC	1 cut(s)	394
HpyCH4III	ACNGT	1 cut(s)	334
HpyCH4V	TGCA	5 cut(s)	241, 365, 416, 566, 581
HpyF10VI	GCNNNNNNNGC	3 cut(s)	140, 262, 362
HpyF3I	CTNAG	2 cut(s)	357, 405
Hsp92II	CATG	2 cut(s)	323, 488
HspAI	GCGC	1 cut(s)	254
Kzo9I	GATC	6 cut(s)	13, 313, 618, 639, 667, 689
LguI	GCTCTTC	1 cut(s)	534
LmnI	GCTCC	3 cut(s)	445, 610, 696
Lsp1109I	GCAGC	3 cut(s)	106, 225, 428
LweI	GCATC	1 cut(s)	343
MaeI	CTAG	4 cut(s)	303, 507, 536, 671
MaeIII	GTNAC	1 cut(s)	328
MalI	GATC	6 cut(s)	15, 315, 620, 641, 669, 691
MboI	GATC	6 cut(s)	13, 313, 618, 639, 667, 689
MboII	GAAGA	7 cut(s)	21, 355, 455, 495, 521, 524, 614
MflI	RGATCY	3 cut(s)	13, 618, 667
MluCI	AATT	3 cut(s)	193, 392, 627
MnlI	CCTC	6 cut(s)	13, 197, 209, 402, 547, 640
MseI	TTAA	2 cut(s)	387, 651
MspA1I	CMGCKG	1 cut(s)	419
MspI	CCGG	1 cut(s)	144
MspR9I	CCNGG	4 cut(s)	131, 145, 377, 680
Mva1269I	GAATGC	2 cut(s)	82, 581
MvaI	CCWGG	3 cut(s)	131, 377, 680
MwoI	GCNNNNNNNGC	3 cut(s)	140, 262, 362
NciI	CCSGG	1 cut(s)	145
NdeI	CATATG	1 cut(s)	436
NdeII	GATC	6 cut(s)	13, 313, 618, 639, 667, 689
NlaIII	CATG	2 cut(s)	323, 488
NlaIV	GGNNCC	2 cut(s)	205, 620
NmeAIII	GCCGAG	1 cut(s)	180
PaeR7I	CTCGAG	1 cut(s)	17
PciSI	GCTCTTC	1 cut(s)	534
PctI	GAATGC	2 cut(s)	82, 581
PfeI	GAWTC	2 cut(s)	82, 539
PkrI	GCNGC	3 cut(s)	96, 240, 418
Psp6I	CCWGG	3 cut(s)	129, 375, 678
PspGI	CCWGG	3 cut(s)	129, 375, 678
PspN4I	GGNNCC	2 cut(s)	205, 620
PspPI	GGNCC	2 cut(s)	133, 682
PstNI	CAGNNNCTG	1 cut(s)	136
PsuI	RGATCY	3 cut(s)	13, 618, 667
PvuII	CAGCTG	1 cut(s)	419
RsaI	GTAC	2 cut(s)	384, 561
RsaNI	GTAC	2 cut(s)	383, 560
SapI	GCTCTTC	1 cut(s)	534
SaqAI	TTAA	2 cut(s)	387, 651
SatI	GCNGC	3 cut(s)	95, 239, 417
Sau3AI	GATC	6 cut(s)	13, 313, 618, 639, 667, 689
Sau96I	GGNCC	2 cut(s)	133, 682
ScrFI	CCNGG	4 cut(s)	131, 145, 377, 680
SfaNI	GCATC	1 cut(s)	343
Sfr274I	CTCGAG	1 cut(s)	17
SinI	GGWCC	1 cut(s)	682
SlaI	CTCGAG	1 cut(s)	17
SmlI	CTYRAG	2 cut(s)	17, 293
SmoI	CTYRAG	2 cut(s)	17, 293
Sse9I	AATT	3 cut(s)	193, 392, 627
SsiI	CCGC	3 cut(s)	165, 184, 350
SspMI	CTAG	4 cut(s)	303, 507, 536, 671
StyD4I	CCNGG	4 cut(s)	129, 143, 375, 678
TaaI	ACNGT	1 cut(s)	334
TaqI	TCGA	4 cut(s)	18, 74, 688, 706
TasI	AATT	3 cut(s)	193, 392, 627
TatI	WGTACW	1 cut(s)	559
TfiI	GAWTC	2 cut(s)	82, 539
Tru1I	TTAA	2 cut(s)	387, 651
Tru9I	TTAA	2 cut(s)	387, 651
TseI	GCWGC	3 cut(s)	94, 238, 416
TspDTI	ATGAA	1 cut(s)	603
VpaK11BI	GGWCC	1 cut(s)	682
XapI	RAATTY	2 cut(s)	392, 627
XbaI	TCTAGA	1 cut(s)	535
XhoI	CTCGAG	1 cut(s)	17
XspI	CTAG	4 cut(s)	303, 507, 536, 671

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.