Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0009532

Physical Location & Seq

Genomic Coordinates Reverse (-)

21440574 .. 21446173

Gene Structure 5600 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g24570.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2856 bp

ATGTCTTCCAAGCCCAAGTCCTTTTCCATTTCGGATTTTCTTCTCCATTTCCCGATTATTGATCGCTCCCCGCGCTCTGTCAAATCCAAGCCCGCCTTTGAGCGTCGGTCACCCAAGATCACCACCCCCACCTCCACTCCCCCTGAAAAACAACCGACACGGGTTGCAAAGGGATCAGAGATACAGGCTCAATTAGGTCTTGTTCAGGAAGATCTGAAGAAGGCAAAGGAGCAGATAATTTTGATTGAGAAAGAGAAGGCAAAAGCAATTGACGAATTGAAAGAAGCGCAGAAAGTGGCCGATGAGGCACATGAGAAACTCAGAGAGGCTTTGGTGGCTCAAAAGCGAGCCGAGGACAATTCTGAAATTGAGAAGTTTCGCGCTGTTGAGTTGGAGCAGGCAGGAATCGAAGCATCCCAAAAGAAGGAAGAGGAATGGGTGAAAGAGCTTGAAGCTGTGAGGAACCAACATGCTCTTGATGTGTCCACTCTACTCTCTACCACTCAGGAACTTCAAAGGGTGAAGCAAGAACTGACCATGACCTGTGATGCCAAAAACCAGGCACTGACTCATGCTGATGATGCAACCAAGATTGCCGAGATCCATGCCAATAAGGTGGAGATTCTTTTAGCTGAGTTGACTCAGTTAAGGGCCTTGCTAGATGCAAAGCTTGAAACAGAGGCTAGCGAGAGCAACAAGATGGTGGTTAGCCTTAAATCGGAGGTAGATTCTCTCAAACAAGAGCTTGATAAAGCAAAAGGTTACAAGGAGAGACTAATAGAGAAAGAGGCTTCCATTGAACAGCTCAACGTTGAGCTAGAATCAGCCAAGATGGCTGAATCTTATGCACGTAGTGTAGTTGAGGAGTGGAAAATTAGGGTTGAGGAATTAGAGATGCAGGTTGAAGAAGCAAATAAGTTGGAGAGGTCTGCATCAGTGTCTTTAGATTCAGTCATGAAACAACTCGAGGGAAACAATGAGTTGTTGCATGATGCAGAATCTGAAATTTCTGCTCTTAAGGGGAAGGTCAGCTTGCTGGAAATTACAATTGGAAGACATAGAGGGGATCTTGAGGACTCAGAACTTTGTCTTGAGATGGCCAAAAGAGAAAATTATGAAATGGCACAAACGGTTGAGTCGCTTAAGTCTGAGCTTGAAACTCTGAAGGAGGAGAAAATGCAGGCTTTAAGCAATAAGAAGCTTGCCTCATCCAGTATTCAAACCCTATTAGAAGAGAAAAACAAACTCATAAATGAGTTGGAAAATTCTAGGGATGAAGAAGAGAAGAGCAAGAAAGCAATGGAAAGCTTAGCTTCAGCCTTACATGAAGTTTCCGCAGAAGCAAGAGAAGCCAAAGAAAAGCTGCTGTCTAATCAAGCTGAGCTTGAGAGTAACGAGTTGCAGATAGAAGACCTGAAAATGGTCTTGAAAGCAACCAACGAAAAGTATGAAGGCATGCTTGATGATGCAAAACACAAAGTCTATCTTGTTACAAGTAACCTTGAACAATGCAAGACTGAGTTCCAAAACGCAAAGGCCGACTGGGAGAAGAGAGAACTTCACCTGGCGAACTGTGTGAAACATTCAGAAGAAGAAAACTCTTTGAAGGAAAAAGAAATAAACAGGCTGCAAAATTTGCTCACAAAATCCAATAAAGAAGCTTGTGCTCTGAAGGACGAAGAAGCCCAGTTGGAAGAGAGCCTGAAGGAAGTTGAATCTGAAGTTATCTATTTGCAGGAAGCTCTTGCAGAAGCAAAGGCCGAGAACATGAAATTAAATGAAAGCATATTGGACAAAGAAAATGAGTTCCAGTGTATTGTTCACGAAAACGATGAACTCCAAGACAAGGAGGCAGCTTCTCTTAAAAAGGTTGAGGAATTGTCTAGGTTACTGGAAGAAGCTGTGGCGAAGAAGCAAGCCGAGGAAAATGGTGAGCTAACAGATAGTGAGAAAGACTATGATTTGCTTCCAAAGGTAGTTGAATTCTCTGAAGAGAATGGGCATGGAGGAGAAGAGAAACCAAAAATGGACCTTGCACCAATTCAAGGTGAGGAGCACAAGACGGAAAGCTTATGGGAAGAGAATAATAATGTTGTCATTAATGGCAAGGCTGAGGAAATGGACTATGCTAAAAGTGATAATGTGAAGGGCAAACCAAAAGAAGATGAGAGCAAAGAGAAGGAAGATGAATCAGTAGAGGTGGAGTATAAGATGTGGGAGAGCTGCAAGATTGAAAAGAAGGAATTCTCGCCGGAGAGGGAACAAAAGCAGGAATCGTTTGAAGAGGAAGTGGTGTCAAAGGTGGGGGGTGGCGAGGGGTTTGATGAGATAAATGGAGTAACGTCAACGGAATGTGTGGACGAAAGCAGGACCTCTCCATCAAAGCAACAGAAGAAGAAGAAGCCTTTTCTCCGCAAGTTCGGAAGCCTACTGAAGAAGAAGGGCACAAGCAACAACCAGAAAGTAGTTGTTTTGACCCTGAGGAACTTGCTCTCAAAAGGGACATTTGGCGCTCAAATGGTGGACCTTGGACTGCCACAAATCATTCAGAATTTGAAAGCACAAGCATGGAGTGATGAGATCATCAAGAAATTAAGTTCTTTTGACATGTATAAGCAAGAAGTCCTCCTTGGCCATCTTGACTGGTCACCCATGCACAAGGATCCAATATTCTGGCGAGAGAATGTTACCAACTTTGAGGAGAATGACTTTCAGCTTGTGGCTTCCGTAGTACTAATAATGCATGACCTTGTCTTGCAGATTCTAAGAGTCCTGATAACTATCTTGGACACATCCGGTGATCCTAGGGCATTGGCCGTAGCCTGCTTTGATATCTCAGTGCCAAGGAACGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000280 GO:0000793 GO:0000794 GO:0000795 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005856 GO:0005875 GO:0006139 GO:0006259 GO:0006310 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007127 GO:0007131 GO:0008150 GO:0008152 GO:0009987 GO:0015630 GO:0016043 GO:0022402 GO:0022414 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0035825 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0048285 GO:0051321 GO:0061982 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0099086 GO:0140013 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WEMBL

Protein Analysis

952

Amino Acids

107.96

Weight (kDa)

4.94

Isoelectric Point (pI)

51.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009532)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02930 AT3G02930 AT3G02930 AT5G16730
fragaria_vesca	FvH4_7g34141 FvH4_7g34141
malus_domestica	MD01G1237800.v1.1 MD01G1238300.v1.1
prunus_persica	Prupe.2G328200_v2.0.a1 Prupe.2G328200_v2.0.a1
pyrus_communis	pycom01g24550 pycom01g24570
rosa_chinensis	RchiOBHm_Chr1g0384501
rosa_laevigata	RLG00000026036
rosa_multiflora	Rmu_sc0006005.1_g000004
rosa_roxburghii	Rroxscaffold_4G00276650
rosa_rugosa	Rorug01G0448300
rosa_samantha	Rh1AG473500 Rh1BG431600 Rh1CG444700 Rh1DG464000
rosa_wichuraiana	Rw1G039910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	889
AccII	CGCG	2 cut(s)	73, 381
AciI	CCGC	4 cut(s)	71, 93, 1335, 2413
AclI	AACGTT	1 cut(s)	810
AclWI	GGATC	6 cut(s)	181, 595, 1074, 2657, 2670, 2795
AcoI	YGGCCR	4 cut(s)	297, 1098, 2632, 2814
AcsI	RAATTY	6 cut(s)	1005, 1264, 1633, 1982, 2243, 2551
AcuI	CTGAAG	8 cut(s)	236, 1184, 1299, 1691, 1724, 1740, 2010, 2453
AdeI	CACNNNGTG	1 cut(s)	854
AfaI	GTAC	1 cut(s)	2733
AfiI	CCNNNNNNNGG	5 cut(s)	424, 718, 1420, 1846, 2045
AflII	CTTAAG	2 cut(s)	1016, 1142
AflIII	ACRYGT	1 cut(s)	2607
AjnI	CCWGG	2 cut(s)	558, 1563
AjuI	GAANNNNNNNTTGG	4 cut(s)	1032, 1064, 2613, 2645
Alw21I	GWGCWC	2 cut(s)	1669, 2058
Alw26I	GTCTC	1 cut(s)	766
AlwI	GGATC	6 cut(s)	181, 595, 1074, 2657, 2670, 2795
AlwNI	CAGNNNCTG	2 cut(s)	565, 1001
Ama87I	CYCGRG	1 cut(s)	965
AoxI	GGCC	7 cut(s)	297, 651, 1098, 1536, 1758, 2632, 2814
ApeKI	GCWGC	4 cut(s)	1363, 1627, 1853, 2223
ApoI	RAATTY	6 cut(s)	1005, 1264, 1633, 1982, 2243, 2551
AseI	ATTAAT	1 cut(s)	2100
Asp700I	GAANNNNTTC	1 cut(s)	2243
AspA2I	CCTAGG	1 cut(s)	2804
AspLEI	GCGC	4 cut(s)	75, 289, 383, 2513
AspS9I	GGNCC	4 cut(s)	651, 2029, 2370, 2524
AsuHPI	GGTGA	9 cut(s)	102, 112, 451, 532, 1553, 1943, 2060, 2640, 2810
AsuNHI	GCTAGC	1 cut(s)	683
AvaI	CYCGRG	1 cut(s)	965
AvaII	GGWCC	3 cut(s)	2029, 2370, 2524
AvrII	CCTAGG	1 cut(s)	2804
AxyI	CCTNAGG	1 cut(s)	2480
BaeGI	GKGCMC	1 cut(s)	2447
BalI	TGGCCA	2 cut(s)	1100, 2634
BamHI	GGATCC	1 cut(s)	2662
BbsI	GAAGAC	2 cut(s)	1060, 1416
Bbv12I	GWGCWC	2 cut(s)	1669, 2058
BbvCI	CCTCAGC	1 cut(s)	2112
BbvI	GCAGC	4 cut(s)	1350, 1614, 1865, 2210
BccI	CCATC	5 cut(s)	694, 826, 1090, 2386, 2643
BceAI	ACGGC	1 cut(s)	2801
BcgI	CGANNNNNNTGC	2 cut(s)	587, 621
BciT130I	CCWGG	2 cut(s)	560, 1565
BcoDI	GTCTC	1 cut(s)	766
BfaI	CTAG	6 cut(s)	659, 684, 818, 1269, 1884, 2805
BfoI	RGCGCY	1 cut(s)	2514
BfrI	CTTAAG	2 cut(s)	1016, 1142
BfuAI	ACCTGC	1 cut(s)	889
BglI	GCCNNNNNGGC	2 cut(s)	305, 833
BglII	AGATCT	1 cut(s)	211
BisI	GCNGC	4 cut(s)	1364, 1628, 1854, 2224
BlnI	CCTAGG	1 cut(s)	2804
BlpI	GCTNAGC	2 cut(s)	1309, 1380
BlsI	GCNGC	4 cut(s)	1365, 1629, 1855, 2225
BmcAI	AGTACT	1 cut(s)	2733
Bme1390I	CCNGG	2 cut(s)	560, 1565
Bme18I	GGWCC	3 cut(s)	2029, 2370, 2524
BmeT110I	CYCGRG	1 cut(s)	965
BmgT120I	GGNCC	4 cut(s)	651, 2029, 2370, 2524
BmiI	GGNNCC	2 cut(s)	464, 2664
BmrFI	CCNGG	2 cut(s)	560, 1565
BmrI	ACTGGG	2 cut(s)	1552, 1681
BmsI	GCATC	8 cut(s)	422, 538, 571, 652, 885, 941, 982, 1456
BmtI	GCTAGC	1 cut(s)	687
BmuI	ACTGGG	2 cut(s)	1552, 1681
BpiI	GAAGAC	2 cut(s)	1060, 1416
Bpu10I	CCTNAGC	1 cut(s)	2112
Bpu1102I	GCTNAGC	2 cut(s)	1309, 1380
BpuEI	CTTGAG	3 cut(s)	1091, 1112, 1406
BsaAI	YACGTR	1 cut(s)	851
BsaBI	GATNNNNATC	1 cut(s)	2780
BsaJI	CCNNGG	6 cut(s)	351, 1920, 2527, 2629, 2804, 2843
BsaWI	WCCGGW	1 cut(s)	2795
BsaXI	ACNNNNNCTCC	2 cut(s)	121, 151
Bsc4I	CCNNNNNNNGG	5 cut(s)	424, 718, 1420, 1846, 2045
Bse1I	ACTGG	6 cut(s)	1212, 1547, 1687, 1810, 1896, 2648
Bse21I	CCTNAGG	1 cut(s)	2480
Bse3DI	GCAATG	1 cut(s)	1305
Bse8I	GATNNNNATC	1 cut(s)	2780
BseBI	CCWGG	2 cut(s)	560, 1565
BseDI	CCNNGG	6 cut(s)	351, 1920, 2527, 2629, 2804, 2843
BseGI	GGATG	4 cut(s)	413, 1208, 1279, 2792
BseJI	GATNNNNATC	1 cut(s)	2780
BseLI	CCNNNNNNNGG	5 cut(s)	424, 718, 1420, 1846, 2045
BseMI	GCAATG	1 cut(s)	1305
BseNI	ACTGG	6 cut(s)	1212, 1547, 1687, 1810, 1896, 2648
BseRI	GAGGAG	5 cut(s)	878, 1184, 2022, 2066, 2714
BseSI	GKGCMC	1 cut(s)	2447
BseXI	GCAGC	4 cut(s)	1350, 1614, 1865, 2210
Bsh1236I	CGCG	2 cut(s)	73, 381
BshFI	GGCC	7 cut(s)	299, 653, 1100, 1538, 1760, 2634, 2816
BsiHKAI	GWGCWC	2 cut(s)	1669, 2058
BsiHKCI	CYCGRG	1 cut(s)	965
BsiSI	CCGG	2 cut(s)	2252, 2796
BslFI	GGGAC	1 cut(s)	2515
BslI	CCNNNNNNNGG	5 cut(s)	424, 718, 1420, 1846, 2045
BsmAI	GTCTC	1 cut(s)	766
BsmFI	GGGAC	1 cut(s)	2515
BsnI	GGCC	7 cut(s)	299, 653, 1100, 1538, 1760, 2634, 2816
BsoBI	CYCGRG	1 cut(s)	965
Bsp1286I	GDGCHC	3 cut(s)	1669, 2058, 2447
Bsp143I	GATC	9 cut(s)	61, 117, 173, 211, 600, 1066, 2580, 2662, 2800
Bsp1720I	GCTNAGC	2 cut(s)	1309, 1380
BspACI	CCGC	4 cut(s)	71, 93, 1335, 2413
BspANI	GGCC	7 cut(s)	299, 653, 1100, 1538, 1760, 2634, 2816
BspFNI	CGCG	2 cut(s)	73, 381
BspHI	TCATGA	1 cut(s)	954
BspLI	GGNNCC	2 cut(s)	464, 2664
BspMI	ACCTGC	1 cut(s)	889
BspOI	GCTAGC	1 cut(s)	687
BspPI	GGATC	6 cut(s)	181, 595, 1074, 2657, 2670, 2795
BspQI	GCTCTTC	1 cut(s)	1280
BspTI	CTTAAG	2 cut(s)	1016, 1142
BsrDI	GCAATG	1 cut(s)	1305
BsrI	ACTGG	6 cut(s)	1212, 1547, 1687, 1810, 1896, 2648
BssECI	CCNNGG	6 cut(s)	351, 1920, 2527, 2629, 2804, 2843
BssMI	GATC	9 cut(s)	61, 117, 173, 211, 600, 1066, 2580, 2662, 2800
BssT1I	CCWWGG	4 cut(s)	2527, 2629, 2804, 2843
Bst2UI	CCWGG	2 cut(s)	560, 1565
Bst4CI	ACNGT	2 cut(s)	1132, 1574
BstAFI	CTTAAG	2 cut(s)	1016, 1142
BstAPI	GCANNNNNTGC	1 cut(s)	1636
BstBAI	YACGTR	1 cut(s)	851
BstEII	GGTNACC	2 cut(s)	108, 2646
BstF5I	GGATG	4 cut(s)	413, 1208, 1279, 2792
BstFNI	CGCG	2 cut(s)	73, 381
BstH2I	RGCGCY	1 cut(s)	2514
BstHHI	GCGC	4 cut(s)	75, 289, 383, 2513
BstKTI	GATC	9 cut(s)	64, 120, 176, 214, 603, 1069, 2583, 2665, 2803
BstMAI	GTCTC	1 cut(s)	766
BstMBI	GATC	9 cut(s)	61, 117, 173, 211, 600, 1066, 2580, 2662, 2800
BstMWI	GCNNNNNNNGC	7 cut(s)	72, 305, 335, 581, 833, 1349, 1636
BstNI	CCWGG	2 cut(s)	560, 1565
BstNSI	RCATGY	3 cut(s)	473, 1459, 2611
BstPI	GGTNACC	2 cut(s)	108, 2646
BstSCI	CCNGG	2 cut(s)	558, 1563
BstSLI	GKGCMC	1 cut(s)	2447
BstUI	CGCG	2 cut(s)	73, 381
BstV1I	GCAGC	4 cut(s)	1350, 1614, 1865, 2210
BstV2I	GAAGAC	2 cut(s)	1060, 1416
BstX2I	RGATCY	4 cut(s)	211, 600, 1066, 2662
BstXI	CCANNNNNNTGG	2 cut(s)	616, 2673
BstYI	RGATCY	4 cut(s)	211, 600, 1066, 2662
Bsu36I	CCTNAGG	1 cut(s)	2480
BsuRI	GGCC	7 cut(s)	299, 653, 1100, 1538, 1760, 2634, 2816
BtsCI	GGATG	4 cut(s)	413, 1208, 1279, 2792
BtsIMutI	CAGTG	4 cut(s)	563, 942, 1817, 2844
BveI	ACCTGC	1 cut(s)	889
CaiI	CAGNNNCTG	2 cut(s)	565, 1001
CciI	TCATGA	1 cut(s)	954
CfoI	GCGC	4 cut(s)	75, 289, 383, 2513
Cfr13I	GGNCC	4 cut(s)	651, 2029, 2370, 2524
CseI	GACGC	1 cut(s)	92
Csp6I	GTAC	1 cut(s)	2732
CviQI	GTAC	1 cut(s)	2732
DpnI	GATC	9 cut(s)	63, 119, 175, 213, 602, 1068, 2582, 2664, 2802
DpnII	GATC	9 cut(s)	61, 117, 173, 211, 600, 1066, 2580, 2662, 2800
DraIII	CACNNNGTG	1 cut(s)	854
EaeI	YGGCCR	4 cut(s)	297, 1098, 2632, 2814
Eco130I	CCWWGG	4 cut(s)	2527, 2629, 2804, 2843
Eco32I	GATATC	1 cut(s)	2833
Eco47I	GGWCC	3 cut(s)	2029, 2370, 2524
Eco57I	CTGAAG	8 cut(s)	236, 1184, 1299, 1691, 1724, 1740, 2010, 2453
Eco81I	CCTNAGG	1 cut(s)	2480
Eco88I	CYCGRG	1 cut(s)	965
Eco91I	GGTNACC	2 cut(s)	108, 2646
EcoO109I	RGGNCCY	2 cut(s)	651, 2370
EcoO65I	GGTNACC	2 cut(s)	108, 2646
EcoRI	GAATTC	2 cut(s)	1982, 2243
EcoRII	CCWGG	2 cut(s)	558, 1563
EcoRV	GATATC	1 cut(s)	2833
EcoT14I	CCWWGG	4 cut(s)	2527, 2629, 2804, 2843
EcoT22I	ATGCAT	1 cut(s)	2745
ErhI	CCWWGG	4 cut(s)	2527, 2629, 2804, 2843
FaqI	GGGAC	1 cut(s)	2515
FauI	CCCGC	2 cut(s)	78, 100
Fnu4HI	GCNGC	4 cut(s)	1364, 1628, 1854, 2224
FokI	GGATG	4 cut(s)	400, 1195, 1286, 2779
Fsp4HI	GCNGC	4 cut(s)	1364, 1628, 1854, 2224
FspBI	CTAG	6 cut(s)	659, 684, 818, 1269, 1884, 2805
GlaI	GCGC	4 cut(s)	74, 288, 382, 2512
GluI	GCNGC	4 cut(s)	1364, 1628, 1854, 2224
HaeII	RGCGCY	1 cut(s)	2514
HaeIII	GGCC	7 cut(s)	299, 653, 1100, 1538, 1760, 2634, 2816
HapII	CCGG	2 cut(s)	2252, 2796
HgaI	GACGC	1 cut(s)	92
HhaI	GCGC	4 cut(s)	75, 289, 383, 2513
Hin6I	GCGC	4 cut(s)	73, 287, 381, 2511
HinP1I	GCGC	4 cut(s)	73, 287, 381, 2511
HincII	GTYRAC	2 cut(s)	639, 2346
HindII	GTYRAC	2 cut(s)	639, 2346
HindIII	AAGCTT	5 cut(s)	668, 1199, 1306, 1659, 2068
HpaII	CCGG	2 cut(s)	2252, 2796
HphI	GGTGA	9 cut(s)	102, 112, 451, 532, 1553, 1943, 2060, 2640, 2810
Hpy166II	GTNNAC	6 cut(s)	486, 639, 1822, 2346, 2359, 2524
Hpy8I	GTNNAC	6 cut(s)	486, 639, 1822, 2346, 2359, 2524
Hpy99I	CGWCG	1 cut(s)	108
HpyCH4III	ACNGT	2 cut(s)	1132, 1574
HpyCH4IV	ACGT	4 cut(s)	810, 850, 2342, 2850
HpyF10VI	GCNNNNNNNGC	7 cut(s)	72, 305, 335, 581, 833, 1349, 1636
HpySE526I	ACGT	4 cut(s)	810, 850, 2342, 2850
HspAI	GCGC	4 cut(s)	73, 287, 381, 2511
Kzo9I	GATC	9 cut(s)	61, 117, 173, 211, 600, 1066, 2580, 2662, 2800
LguI	GCTCTTC	1 cut(s)	1280
LmnI	GCTCC	4 cut(s)	71, 229, 394, 2053
Lsp1109I	GCAGC	4 cut(s)	1350, 1614, 1865, 2210
LweI	GCATC	8 cut(s)	422, 538, 571, 652, 885, 941, 982, 1456
MaeI	CTAG	6 cut(s)	659, 684, 818, 1269, 1884, 2805
MaeII	ACGT	4 cut(s)	810, 850, 2342, 2850
MaeIII	GTNAC	9 cut(s)	108, 761, 1391, 1489, 1496, 1887, 2338, 2646, 2686
MalI	GATC	9 cut(s)	63, 119, 175, 213, 602, 1068, 2582, 2664, 2802
MboI	GATC	9 cut(s)	61, 117, 173, 211, 600, 1066, 2580, 2662, 2800
MfeI	CAATTG	2 cut(s)	267, 1047
MflI	RGATCY	4 cut(s)	211, 600, 1066, 2662
MhlI	GDGCHC	3 cut(s)	1669, 2058, 2447
MlsI	TGGCCA	2 cut(s)	1100, 2634
MluNI	TGGCCA	2 cut(s)	1100, 2634
MlyI	GAGTC	5 cut(s)	562, 634, 1070, 1145, 2778
MmeI	TCCRAC	4 cut(s)	372, 900, 1239, 1671
Mox20I	TGGCCA	2 cut(s)	1100, 2634
Mph1103I	ATGCAT	1 cut(s)	2745
MroXI	GAANNNNTTC	1 cut(s)	2243
MscI	TGGCCA	2 cut(s)	1100, 2634
MseI	TTAA	9 cut(s)	647, 714, 1017, 1143, 1187, 1775, 1863, 2100, 2594
MslI	CAYNNNNRTG	2 cut(s)	576, 2566
Msp20I	TGGCCA	2 cut(s)	1100, 2634
MspCI	CTTAAG	2 cut(s)	1016, 1142
MspI	CCGG	2 cut(s)	2252, 2796
MspR9I	CCNGG	2 cut(s)	560, 1565
MunI	CAATTG	2 cut(s)	267, 1047
MvaI	CCWGG	2 cut(s)	560, 1565
MvnI	CGCG	2 cut(s)	73, 381
MwoI	GCNNNNNNNGC	7 cut(s)	72, 305, 335, 581, 833, 1349, 1636
NdeII	GATC	9 cut(s)	61, 117, 173, 211, 600, 1066, 2580, 2662, 2800
NheI	GCTAGC	1 cut(s)	683
NlaIV	GGNNCC	2 cut(s)	464, 2664
NmeAIII	GCCGAG	4 cut(s)	376, 622, 1786, 1945
NmuCI	GTSAC	2 cut(s)	108, 2646
NsiI	ATGCAT	1 cut(s)	2745
NspI	RCATGY	3 cut(s)	473, 1459, 2611
PaeI	GCATGC	1 cut(s)	1459
PaeR7I	CTCGAG	1 cut(s)	965
PagI	TCATGA	1 cut(s)	954
PciI	ACATGT	1 cut(s)	2607
PciSI	GCTCTTC	1 cut(s)	1280
PcsI	WCGNNNNNNNCGW	1 cut(s)	1536
PdmI	GAANNNNTTC	1 cut(s)	2243
PflFI	GACNNNGTC	1 cut(s)	2750
PkrI	GCNGC	4 cut(s)	1365, 1629, 1855, 2225
PleI	GAGTC	5 cut(s)	562, 634, 1070, 1144, 2777
PpsI	GAGTC	5 cut(s)	562, 634, 1070, 1144, 2777
Ppu21I	YACGTR	1 cut(s)	851
PpuMI	RGGWCCY	1 cut(s)	2370
PscI	ACATGT	1 cut(s)	2607
PshBI	ATTAAT	1 cut(s)	2100
Psp1406I	AACGTT	1 cut(s)	810
Psp5II	RGGWCCY	1 cut(s)	2370
Psp6I	CCWGG	2 cut(s)	558, 1563
PspEI	GGTNACC	2 cut(s)	108, 2646
PspGI	CCWGG	2 cut(s)	558, 1563
PspN4I	GGNNCC	2 cut(s)	464, 2664
PspPI	GGNCC	4 cut(s)	651, 2029, 2370, 2524
PspPPI	RGGWCCY	1 cut(s)	2370
PspXI	VCTCGAGB	1 cut(s)	965
PstNI	CAGNNNCTG	2 cut(s)	565, 1001
PsuI	RGATCY	4 cut(s)	211, 600, 1066, 2662
PsyI	GACNNNGTC	1 cut(s)	2750
RsaI	GTAC	1 cut(s)	2733
RsaNI	GTAC	1 cut(s)	2732
RseI	CAYNNNNRTG	2 cut(s)	576, 2566
SapI	GCTCTTC	1 cut(s)	1280
SaqAI	TTAA	9 cut(s)	647, 714, 1017, 1143, 1187, 1775, 1863, 2100, 2594
SatI	GCNGC	4 cut(s)	1364, 1628, 1854, 2224
Sau3AI	GATC	9 cut(s)	61, 117, 173, 211, 600, 1066, 2580, 2662, 2800
Sau96I	GGNCC	4 cut(s)	651, 2029, 2370, 2524
ScaI	AGTACT	1 cut(s)	2733
SchI	GAGTC	5 cut(s)	562, 634, 1070, 1145, 2778
ScrFI	CCNGG	2 cut(s)	560, 1565
SduI	GDGCHC	3 cut(s)	1669, 2058, 2447
SfaNI	GCATC	8 cut(s)	422, 538, 571, 652, 885, 941, 982, 1456
Sfr274I	CTCGAG	1 cut(s)	965
SinI	GGWCC	3 cut(s)	2029, 2370, 2524
SlaI	CTCGAG	1 cut(s)	965
SmiMI	CAYNNNNRTG	2 cut(s)	576, 2566
SmlI	CTYRAG	6 cut(s)	965, 1016, 1070, 1091, 1142, 1385
SmoI	CTYRAG	6 cut(s)	965, 1016, 1070, 1091, 1142, 1385
SphI	GCATGC	1 cut(s)	1459
SsiI	CCGC	4 cut(s)	71, 93, 1335, 2413
SspI	AATATT	1 cut(s)	2670
SspMI	CTAG	6 cut(s)	659, 684, 818, 1269, 1884, 2805
StyD4I	CCNGG	2 cut(s)	558, 1563
StyI	CCWWGG	4 cut(s)	2527, 2629, 2804, 2843
TaaI	ACNGT	2 cut(s)	1132, 1574
TaiI	ACGT	4 cut(s)	813, 853, 2345, 2853
TaqI	TCGA	2 cut(s)	408, 966
TaqII	GACCGA	1 cut(s)	96
TatI	WGTACW	1 cut(s)	2731
Tru1I	TTAA	9 cut(s)	647, 714, 1017, 1143, 1187, 1775, 1863, 2100, 2594
Tru9I	TTAA	9 cut(s)	647, 714, 1017, 1143, 1187, 1775, 1863, 2100, 2594
TscAI	CASTG	4 cut(s)	570, 942, 1817, 2844
TseFI	GTSAC	2 cut(s)	108, 2646
TseI	GCWGC	4 cut(s)	1363, 1627, 1853, 2223
Tsp45I	GTSAC	2 cut(s)	108, 2646
TspDTI	ATGAA	9 cut(s)	971, 1131, 1290, 1341, 1464, 1784, 1794, 1848, 2202
TspGWI	ACGGA	3 cut(s)	2078, 2363, 2716
TspRI	CASTG	4 cut(s)	570, 942, 1817, 2844
Tth111I	GACNNNGTC	1 cut(s)	2750
Vha464I	CTTAAG	2 cut(s)	1016, 1142
VpaK11BI	GGWCC	3 cut(s)	2029, 2370, 2524
VspI	ATTAAT	1 cut(s)	2100
XapI	RAATTY	6 cut(s)	1005, 1264, 1633, 1982, 2243, 2551
XceI	RCATGY	3 cut(s)	473, 1459, 2611
XhoI	CTCGAG	1 cut(s)	965
XmaJI	CCTAGG	1 cut(s)	2804
XmnI	GAANNNNTTC	1 cut(s)	2243
XspI	CTAG	6 cut(s)	659, 684, 818, 1269, 1884, 2805
ZrmI	AGTACT	1 cut(s)	2733
Zsp2I	ATGCAT	1 cut(s)	2745

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.