RLG00000026036

WEB family protein At5g16730, chloroplastic-like

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
Physical Location & Seq
Forward (+)
164571 .. 170282
5712 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000026036

Sequence Viewer

Length: 2619 bp
ATGTCTTCCAAGTCCAAATCTAGTGTATCTGAAACTCCTAAAAAGGCAGCATCTGAAATTCCTAAGAAAGTAGCATCTGAACCTCCTAAGAAAGCATCACCAGCAACCCCGCGAGTGAGTAAACTGAGCAGGGCAGTGGGAGCTGGAGCGGCTGCTAAATCAGAATCCGATTCAGCAGCATCTCCTTCTCCTTTGCAGAATTCTCGCCTTTCAATTGATCGGTCCCCGCGCCCTGTCAACTCCCCCAAGCCAACAACAATTGAGCGTCGATCACCCAAGATCACTACCCCGCCGCCAGCTGAAAAACAACCCACACGGGGCACTAAGGGATCAGAATTACAGGCTCAGTTGAGTCTTGTTCAGGAAGATCTAAAGAAAGCAAAGGAGCAGATAGATTTGACTGAAAAAGAGAAGGCTAAAGCAATCGATGATTTGAAAGAAGCACAGAGAGCGTCTGAGGAGGCAAATGAAAAGCTCAGAGAGGCTTTGGTGGCTCAAAAGCGAGCCCAAGAGGATTCAGAAATCGAGAAGTTTCGTGCTGTTGAGTTGGAACAGGCAGGAATTGAAGCAGCCCAGAAGAAGGAAGGTGAATGGGAGAAAGAGCTTGAAGCTGTTAGGAATCAACATGCGCTGGATGTGGCTACTCTACTCTCTACTACTCAAGAACTTCAAAAGCTCAAGCAAGAACTGACCATGACCTGTGATGCAAAAAACCAGGCACTGAGCCATGCTGATGATGCAACTAAGATTGCTGAGATTCATGCCGAGAAGGTGGAAATTCTCTCGGCTGAGCTGACCCGGTTGAAGGGCTTACTAGAGTTGAAGCAGGAAACAGAGACTAGCGAACATAGCAAGATGGTGCTTCAGCTTGAATCAGAGGTAGAATCTCTCAAGCATCAACTTGAGAAAGCAAAAGGTTACGAGGAGAGATTGATGGAGAAAGAGACTTCCATTGAACAGCTTAACGTTGAGCTTGAGTCAGCCAAGATGGCTGAATCTTATGCTCACAGTATTGTTGAGGAGTGGAAAATTAGGGTTGAGGAATTAGAGATGCAGGTTGAGGAAGCAAATAAGGCAGAGAAATCTGCATCAGAATCCTTAGATTCAGTCATGAAACAACTAGAGGGAAACCATGACTTATTGCATGATGCAGAATCTGAAATTGCTGCTCTTAAAGAGAAGGTGAGTTTGCTGGAAATGACAATTGTAAGACATAGAGGAGATCTTGAGGAATCAGAACGCTGTCTTGGTACGACCAAGGAAGAAAATCAGAAATTGACAAAAATGGTTGAGTCACTTAAGTCTGAGCTCGAAACTGTGAAGGAGGAGAAATTGCAGGCTTTAAGCAATGAGAAGCTTGCAGCATCAAGTGTTCAAAGCCTGTTAGAAGAAAAAAACAAACTCATAAATGAGTTGGAACATTCCAGGGATGAAGAAGAGAAGAGCAAAAAAGCAATGGAAAGCTTAGCTTCTGCCCTACATGAAGTCTCCACAGAAGCTAGAGAAGCAAAAGAAAAGCTGCTAACTAATCAAGCAGAGCACGATAGTTATGAGTTGCAGATAGAAGACCTTAAAATGGTCTTGAAAGCAACCAATGAAAAGCATGAAGCCATAATTGATGATGCAAAACATGAAATTCATCTTCTTACAAGTAATGTAGAACAATGCAAGACTGAGTTACAACATGCAAAGGCTGAGTGGGAGCAAAAAGAACTTCATCTGGTGAATTCTGTAAAGCATTCAGAAGAAGAAAACTCTTCTATGGAAAAAGAAATAAACAGGCTGCTAAATTTGCTCAAAAGCACCGAGGAAGAAGCTTGTGCTATGAAGGAAGAAGAAGCGCAGTTGAAAGATAGCATGAAGGAAGTTGAATCTGAGGTTATCTGTTTGCAGGAAGCTCTTGCAGAAGCAAAGGCTGAGAACATGAAACTAAAGGAAAGCATATTGGACAAAGAAAATGAGTTCCAGAGTGTTATACATGAAAATGAGGAGCTCCAGAACAGGGAGGCTGCTTCTCATAAGAAGGTGGAGGAATTGTCAAAGCTACTTGAAGAAGCAGTGGCCAAGAAGCAAGCCGAGGAAAATGGTGAGCTAACAGACAGTGAGAAGGACTATGATTTGCTTCCTAAGGTAGTCGAATTCTCTGAAGAGAATGGGCATGGAAGAGAAGAGAAACTCAAAGTGGAGCTTCCACCACCTCAAAGTGTGGAACCGAAGAGTGAAAATTTATGGCAAGAGAATAATGTCTCGAATGGCAAGGCTGAACATGTGGATTCTGCTCAAATCGATACTCTGAATGGGAAACCCAAAGGTGATGAAAGCAAAGAGAAAGAAGATGACTCCTTAGAAGTTGAATATAAAATGTGGGAGAGCTGCAAGATTGAAAAGAAGGAATTTTCGCCAGAGAGAGAACAGGAGCAGGAATCCTTTGAAGAGGAAGTGGACTCAAAGGGGGATGGTGGTGAGAAATTGGATCAGATAAATGGATTAACTTCAACTGAAAGTGTTGATGACAGTGCAACTTCTCCATCAAAGCAGCAACAACAGAAGAAGAAGAAGCCTTTACTCCGCAAATTTGGAAGCCTTCTCAAGAAGAAGGGCACTAGCAACAGCAAGTAG

Protein Analysis

873

Amino Acids

98.07

Weight (kDa)

5.01

Isoelectric Point (pI)

54.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WEMBL PF05701 112 - 511 2.5e-18 Weak chloroplast movement under blue light
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1045
AccBSI CCGCTC 1 cut(s) 149
AccII CGCG 2 cut(s) 112, 229
AciI CCGC 6 cut(s) 110, 149, 227, 290, 293, 2569
AclI AACGTT 1 cut(s) 966
AclWI GGATC 2 cut(s) 337, 2481
AcoI YGGCCR 1 cut(s) 2061
AcuI CTGAAG 2 cut(s) 848, 2166
AfaI GTAC 1 cut(s) 1252
AfiI CCNNNNNNNGG 5 cut(s) 317, 580, 805, 1576, 2002
AflII CTTAAG 1 cut(s) 1298
AflIII ACRYGT 1 cut(s) 2266
AjnI CCWGG 2 cut(s) 714, 1424
AjuI GAANNNNNNNTTGG 2 cut(s) 1230, 1262
Alw21I GWGCWC 3 cut(s) 1311, 1542, 1995
Alw26I GTCTC 4 cut(s) 830, 938, 1492, 2251
AlwI GGATC 2 cut(s) 337, 2481
AlwNI CAGNNNCTG 3 cut(s) 53, 721, 1157
AoxI GGCC 1 cut(s) 2061
AspLEI GCGC 3 cut(s) 231, 631, 1843
AspS9I GGNCC 1 cut(s) 222
AsuC2I CCSGG 1 cut(s) 799
AsuHPI GGTGA 8 cut(s) 90, 264, 599, 1195, 1735, 2099, 2324, 2474
AvaII GGWCC 1 cut(s) 222
AxyI CCTNAGG 1 cut(s) 2127
BaeGI GKGCMC 2 cut(s) 323, 2603
BalI TGGCCA 1 cut(s) 2063
BanII GRGCYC 3 cut(s) 508, 1311, 1995
BbsI GAAGAC 1 cut(s) 1572
Bbv12I GWGCWC 3 cut(s) 1311, 1542, 1995
BccI CCATC 5 cut(s) 850, 928, 982, 2450, 2536
BcgI CGANNNNNNTGC 2 cut(s) 185, 219
BciT130I CCWGG 2 cut(s) 716, 1426
BcnI CCSGG 1 cut(s) 799
BcoDI GTCTC 4 cut(s) 830, 938, 1492, 2251
BfaI CTAG 6 cut(s) 21, 815, 840, 1121, 1500, 2604
BfrI CTTAAG 1 cut(s) 1298
BfuAI ACCTGC 1 cut(s) 1045
BglI GCCNNNNNGGC 1 cut(s) 989
BglII AGATCT 2 cut(s) 367, 1222
BlpI GCTNAGC 2 cut(s) 789, 1465
Bme1390I CCNGG 3 cut(s) 716, 799, 1426
Bme18I GGWCC 1 cut(s) 222
BmgT120I GGNCC 1 cut(s) 222
BmiI GGNNCC 2 cut(s) 224, 2211
BmrFI CCNGG 3 cut(s) 716, 799, 1426
BpiI GAAGAC 1 cut(s) 1572
BpmI CTGGAG 2 cut(s) 165, 1979
Bpu1102I GCTNAGC 2 cut(s) 789, 1465
BpuEI CTTGAG 7 cut(s) 645, 662, 875, 923, 995, 1247, 2573
BpuMI CCSGG 1 cut(s) 799
Bsa29I ATCGAT 2 cut(s) 426, 2286
BsaJI CCNNGG 4 cut(s) 1257, 1425, 1806, 2076
BsaXI ACNNNNNCTCC 2 cut(s) 2021, 2051
Bsc4I CCNNNNNNNGG 5 cut(s) 317, 580, 805, 1576, 2002
Bse21I CCTNAGG 1 cut(s) 2127
Bse3DI GCAATG 2 cut(s) 1354, 1461
BseBI CCWGG 2 cut(s) 716, 1426
BseCI ATCGAT 2 cut(s) 426, 2286
BseDI CCNNGG 4 cut(s) 1257, 1425, 1806, 2076
BseGI GGATG 3 cut(s) 640, 1435, 2461
BseLI CCNNNNNNNGG 5 cut(s) 317, 580, 805, 1576, 2002
BseMI GCAATG 2 cut(s) 1354, 1461
BseRI GAGGAG 6 cut(s) 473, 938, 1034, 1233, 1340, 2003
BseSI GKGCMC 2 cut(s) 323, 2603
Bsh1236I CGCG 2 cut(s) 112, 229
BshFI GGCC 1 cut(s) 2063
BshVI ATCGAT 2 cut(s) 426, 2286
BsiHKAI GWGCWC 3 cut(s) 1311, 1542, 1995
BsiSI CCGG 1 cut(s) 799
BslFI GGGAC 1 cut(s) 208
BslI CCNNNNNNNGG 5 cut(s) 317, 580, 805, 1576, 2002
BsmAI GTCTC 4 cut(s) 830, 938, 1492, 2251
BsmFI GGGAC 1 cut(s) 208
BsmI GAATGC 1 cut(s) 1738
BsnI GGCC 1 cut(s) 2063
Bsp1286I GDGCHC 6 cut(s) 323, 508, 1311, 1542, 1995, 2603
Bsp143I GATC 7 cut(s) 217, 269, 279, 329, 367, 1222, 2473
Bsp1720I GCTNAGC 2 cut(s) 789, 1465
BspACI CCGC 6 cut(s) 110, 149, 227, 290, 293, 2569
BspANI GGCC 1 cut(s) 2063
BspDI ATCGAT 2 cut(s) 426, 2286
BspFNI CGCG 2 cut(s) 112, 229
BspHI TCATGA 1 cut(s) 1110
BspLI GGNNCC 2 cut(s) 224, 2211
BspMI ACCTGC 1 cut(s) 1045
BspPI GGATC 2 cut(s) 337, 2481
BspQI GCTCTTC 1 cut(s) 1436
BspTI CTTAAG 1 cut(s) 1298
BsrBI CCGCTC 1 cut(s) 149
BsrDI GCAATG 2 cut(s) 1354, 1461
BssECI CCNNGG 4 cut(s) 1257, 1425, 1806, 2076
BssMI GATC 7 cut(s) 217, 269, 279, 329, 367, 1222, 2473
BssT1I CCWWGG 1 cut(s) 1257
Bst2UI CCWGG 2 cut(s) 716, 1426
Bst4CI ACNGT 4 cut(s) 1010, 1318, 2102, 2516
Bst6I CTCTTC 8 cut(s) 1431, 1436, 1762, 2142, 2158, 2163, 2210, 2427
BstAFI CTTAAG 1 cut(s) 1298
BstC8I GCNNGC 5 cut(s) 297, 504, 1338, 1359, 2073
BstF5I GGATG 3 cut(s) 640, 1435, 2461
BstFNI CGCG 2 cut(s) 112, 229
BstHHI GCGC 3 cut(s) 231, 631, 1843
BstKTI GATC 7 cut(s) 220, 272, 282, 332, 370, 1225, 2476
BstMAI GTCTC 4 cut(s) 830, 938, 1492, 2251
BstMBI GATC 7 cut(s) 217, 269, 279, 329, 367, 1222, 2473
BstNI CCWGG 2 cut(s) 716, 1426
BstNSI RCATGY 3 cut(s) 629, 1688, 2270
BstSCI CCNGG 3 cut(s) 714, 797, 1424
BstSLI GKGCMC 2 cut(s) 323, 2603
BstUI CGCG 2 cut(s) 112, 229
BstV2I GAAGAC 1 cut(s) 1572
BstX2I RGATCY 2 cut(s) 367, 1222
BstYI RGATCY 2 cut(s) 367, 1222
Bsu15I ATCGAT 2 cut(s) 426, 2286
Bsu36I CCTNAGG 1 cut(s) 2127
BsuRI GGCC 1 cut(s) 2063
BsuTUI ATCGAT 2 cut(s) 426, 2286
BtsCI GGATG 3 cut(s) 640, 1435, 2461
BtsI GCAGTG 2 cut(s) 141, 2064
BtsIMutI CAGTG 5 cut(s) 141, 719, 2064, 2107, 2521
BveI ACCTGC 1 cut(s) 1045
Cac8I GCNNGC 5 cut(s) 297, 504, 1338, 1359, 2073
CaiI CAGNNNCTG 3 cut(s) 53, 721, 1157
CciI TCATGA 1 cut(s) 1110
CfoI GCGC 3 cut(s) 231, 631, 1843
Cfr13I GGNCC 1 cut(s) 222
ClaI ATCGAT 2 cut(s) 426, 2286
CseI GACGC 2 cut(s) 254, 441
Csp6I GTAC 1 cut(s) 1251
CviQI GTAC 1 cut(s) 1251
DpnI GATC 7 cut(s) 219, 271, 281, 331, 369, 1224, 2475
DpnII GATC 7 cut(s) 217, 269, 279, 329, 367, 1222, 2473
EaeI YGGCCR 1 cut(s) 2061
Eam1104I CTCTTC 8 cut(s) 1431, 1436, 1762, 2142, 2158, 2163, 2210, 2427
EarI CTCTTC 8 cut(s) 1431, 1436, 1762, 2142, 2158, 2163, 2210, 2427
Ecl136II GAGCTC 2 cut(s) 1309, 1993
Eco130I CCWWGG 1 cut(s) 1257
Eco24I GRGCYC 3 cut(s) 508, 1311, 1995
Eco47I GGWCC 1 cut(s) 222
Eco53kI GAGCTC 2 cut(s) 1309, 1993
Eco57I CTGAAG 2 cut(s) 848, 2166
Eco81I CCTNAGG 1 cut(s) 2127
EcoICRI GAGCTC 2 cut(s) 1309, 1993
EcoRI GAATTC 3 cut(s) 199, 1726, 2138
EcoRII CCWGG 2 cut(s) 714, 1424
EcoT14I CCWWGG 1 cut(s) 1257
EcoT38I GRGCYC 3 cut(s) 508, 1311, 1995
ErhI CCWWGG 1 cut(s) 1257
FalI AAGNNNNNCTT 4 cut(s) 1453, 1485, 2172, 2204
FaqI GGGAC 1 cut(s) 208
FauI CCCGC 3 cut(s) 117, 234, 297
FokI GGATG 3 cut(s) 647, 1442, 2468
FriOI GRGCYC 3 cut(s) 508, 1311, 1995
FspBI CTAG 6 cut(s) 21, 815, 840, 1121, 1500, 2604
GlaI GCGC 3 cut(s) 230, 630, 1842
GsuI CTGGAG 2 cut(s) 165, 1979
HaeIII GGCC 1 cut(s) 2063
HapII CCGG 1 cut(s) 799
HgaI GACGC 2 cut(s) 254, 441
HhaI GCGC 3 cut(s) 231, 631, 1843
Hin6I GCGC 3 cut(s) 229, 629, 1841
HinP1I GCGC 3 cut(s) 229, 629, 1841
HincII GTYRAC 1 cut(s) 238
HindII GTYRAC 1 cut(s) 238
HindIII AAGCTT 3 cut(s) 1355, 1462, 1815
HpaII CCGG 1 cut(s) 799
HphI GGTGA 8 cut(s) 90, 264, 599, 1195, 1735, 2099, 2324, 2474
Hpy166II GTNNAC 3 cut(s) 122, 238, 2443
Hpy8I GTNNAC 3 cut(s) 122, 238, 2443
Hpy99I CGWCG 1 cut(s) 270
HpyCH4III ACNGT 4 cut(s) 1010, 1318, 2102, 2516
HpyCH4IV ACGT 1 cut(s) 966
HpySE526I ACGT 1 cut(s) 966
HspAI GCGC 3 cut(s) 229, 629, 1841
Kzo9I GATC 7 cut(s) 217, 269, 279, 329, 367, 1222, 2473
LguI GCTCTTC 1 cut(s) 1436
LmnI GCTCC 8 cut(s) 140, 146, 385, 1702, 1990, 1998, 2185, 2416
MaeI CTAG 6 cut(s) 21, 815, 840, 1121, 1500, 2604
MaeII ACGT 1 cut(s) 966
MaeIII GTNAC 3 cut(s) 917, 1293, 1677
MalI GATC 7 cut(s) 219, 271, 281, 331, 369, 1224, 2475
MbiI CCGCTC 1 cut(s) 149
MboI GATC 7 cut(s) 217, 269, 279, 329, 367, 1222, 2473
MfeI CAATTG 3 cut(s) 213, 258, 1203
MflI RGATCY 2 cut(s) 367, 1222
MhlI GDGCHC 6 cut(s) 323, 508, 1311, 1542, 1995, 2603
MlsI TGGCCA 1 cut(s) 2063
MluNI TGGCCA 1 cut(s) 2063
MlyI GAGTC 5 cut(s) 361, 986, 1301, 2333, 2438
MmeI TCCRAC 2 cut(s) 528, 1395
Mox20I TGGCCA 1 cut(s) 2063
MscI TGGCCA 1 cut(s) 2063
MseI TTAA 6 cut(s) 963, 1173, 1299, 1343, 1572, 2489
MslI CAYNNNNRTG 2 cut(s) 732, 1983
Msp20I TGGCCA 1 cut(s) 2063
MspA1I CMGCKG 1 cut(s) 299
MspCI CTTAAG 1 cut(s) 1298
MspI CCGG 1 cut(s) 799
MspR9I CCNGG 3 cut(s) 716, 799, 1426
MunI CAATTG 3 cut(s) 213, 258, 1203
Mva1269I GAATGC 1 cut(s) 1738
MvaI CCWGG 2 cut(s) 716, 1426
MvnI CGCG 2 cut(s) 112, 229
NciI CCSGG 1 cut(s) 799
NdeII GATC 7 cut(s) 217, 269, 279, 329, 367, 1222, 2473
NlaIV GGNNCC 2 cut(s) 224, 2211
NmeAIII GCCGAG 3 cut(s) 764, 790, 2101
NmuCI GTSAC 1 cut(s) 1293
NspI RCATGY 3 cut(s) 629, 1688, 2270
PagI TCATGA 1 cut(s) 1110
PciI ACATGT 1 cut(s) 2266
PciSI GCTCTTC 1 cut(s) 1436
PctI GAATGC 1 cut(s) 1738
PleI GAGTC 5 cut(s) 360, 985, 1300, 2333, 2438
PpsI GAGTC 5 cut(s) 360, 985, 1300, 2333, 2438
PscI ACATGT 1 cut(s) 2266
Psp124BI GAGCTC 2 cut(s) 1311, 1995
Psp1406I AACGTT 1 cut(s) 966
Psp6I CCWGG 2 cut(s) 714, 1424
PspGI CCWGG 2 cut(s) 714, 1424
PspN4I GGNNCC 2 cut(s) 224, 2211
PspPI GGNCC 1 cut(s) 222
PstNI CAGNNNCTG 3 cut(s) 53, 721, 1157
PsuI RGATCY 2 cut(s) 367, 1222
PvuII CAGCTG 1 cut(s) 299
RsaI GTAC 1 cut(s) 1252
RsaNI GTAC 1 cut(s) 1251
RseI CAYNNNNRTG 2 cut(s) 732, 1983
SacI GAGCTC 2 cut(s) 1311, 1995
SapI GCTCTTC 1 cut(s) 1436
SaqAI TTAA 6 cut(s) 963, 1173, 1299, 1343, 1572, 2489
Sau3AI GATC 7 cut(s) 217, 269, 279, 329, 367, 1222, 2473
Sau96I GGNCC 1 cut(s) 222
SchI GAGTC 5 cut(s) 361, 986, 1301, 2333, 2438
ScrFI CCNGG 3 cut(s) 716, 799, 1426
SduI GDGCHC 6 cut(s) 323, 508, 1311, 1542, 1995, 2603
SinI GGWCC 1 cut(s) 222
SmiMI CAYNNNNRTG 2 cut(s) 732, 1983
SmlI CTYRAG 8 cut(s) 660, 677, 890, 902, 974, 1226, 1298, 2588
SmoI CTYRAG 8 cut(s) 660, 677, 890, 902, 974, 1226, 1298, 2588
SsiI CCGC 6 cut(s) 110, 149, 227, 290, 293, 2569
SspMI CTAG 6 cut(s) 21, 815, 840, 1121, 1500, 2604
SstI GAGCTC 2 cut(s) 1311, 1995
StyD4I CCNGG 3 cut(s) 714, 797, 1424
StyI CCWWGG 1 cut(s) 1257
TaaI ACNGT 4 cut(s) 1010, 1318, 2102, 2516
TaiI ACGT 1 cut(s) 969
TaqI TCGA 7 cut(s) 268, 426, 525, 1311, 2136, 2249, 2286
TaqII GACCGA 1 cut(s) 210
TauI GCSGC 2 cut(s) 152, 295
Tru1I TTAA 6 cut(s) 963, 1173, 1299, 1343, 1572, 2489
Tru9I TTAA 6 cut(s) 963, 1173, 1299, 1343, 1572, 2489
TscAI CASTG 5 cut(s) 141, 726, 2064, 2107, 2521
TseFI GTSAC 1 cut(s) 1293
Tsp45I GTSAC 1 cut(s) 1293
TspRI CASTG 5 cut(s) 141, 726, 2064, 2107, 2521
Vha464I CTTAAG 1 cut(s) 1298
VpaK11BI GGWCC 1 cut(s) 222
XceI RCATGY 3 cut(s) 629, 1688, 2270
XspI CTAG 6 cut(s) 21, 815, 840, 1121, 1500, 2604
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.