Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0009532

Physical Location & Seq

Genomic Coordinates Reverse (-)

54434445 .. 54437708

Gene Structure 3264 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0448300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2091 bp

ATGAACAACATGATCATCAGGTTGATATTGCTTCTGGTGTTTGTTGGATGGCTCATAGTTTGGATTATGGTGCCAACAAAAACTTACAAATATACTTGGAAACCCAACCTTGAAGCCAATCTCACTTCAACTTATTTTGGAGTGCAAGGGACAAATCTGCTGCTTTTCGCTTTCCCAATGATGTTCGTAGCAGCCTTGAGCTGTGTTTATCTTCATCTAGTTCAGAAAAAATCACAAAACTCCACCGAGATCAGGTCGTCGGTTGCTGCTGGCTTCTGGAGACGTCCGGTGGTTGTAACGGCTCCTCTGGGGGTCGTCACGGCGATGGAGCTAGGGTTTGGGGTGATGTTTATTTCACTCTTGGTTTGGTCTCTAGCTAACTACTTGATTACCAGCTTCGGCAACCTCCATATGCATATGAATATGACTACGATGATGAACATGGATAAAGTATGGCAAAGCAAGTTTCGAAGTGTATCGTTGAGACTTGGGTACATTGGGAACATATGCTGGGCGTTTCTCTTCTTTCCTGTGACTCGAAGCTCTTCGATTTTACACGTGTTTGGGCTCACATCGGAGTCGAGTATAAAGTACCATATTTGGCTTGGCCATCTCTCCATGCTTCTATTTGCTGTACACACCGTAGGCTTCATCATCTACTGGGGCATGACTCATCAAATGGCTGAAATGCTAGAATGGAGCTCGACTTATGTATCAAACATAGCTGGAGAGATTGCAATTGTATTTGCAATGGCAATGTGGGTGACAAGCATTCCTCGTGTTAGACGGAAAATGTTTGAAGTATTTTTCTATACGCACCAGCTATACCCACTCTATATCTTGTTCTACGTCTTACATGTTGGTGCTTCCTACTTCTGTATGATCCTTCCCGGAATCTTCCTCTTTGTCATTGATCGATACTTGAGATTTTTACAGTCTTCCCGACACGCTGCTTTAGTCTCAGCACGGGTTCTACCTTGTGAAACAATTGAGCTCAACTTCTCCAAGAGCAAAGGATTGGATTATAATCCTACTAGCATCTTGTTCGTCAATGTGCCTAGCATATCAAAGTTGCAATGGCACCCATTTACAGTGAATTCAAACTCTAACATGGAGGCGGACAAAATAAGTGTTGTGATTAAGAGTTTAGGAAGTTGGTCTCAAAAGCTTTATAAGCAACTGGCTTCTAATTCGGTGGAGCATATCCAAGTTTCTGTTGAAGGACCTTATGGACCTACTTCATCTCATTTTATGAGGCACAAGGGTTTGGTGATGGTAAGTGGAGGCAGTGGAATTACTCCTATGATTTGCATAATCCGAGAAATTATTTTCCAAAGCACTAAACCCGACTGCCATGTTCCAAGTGTACGGCTGATTTGTGCATTCAAGAACTCAGCTGATCTCTCACTGCTGCAACTATTGCTTCCACTTTCTGGCACGCCTTCTGACCTTACCCAGATACAATTGCAAATAGAAGCCTATGTTACAAGGGAGACAGAGCAGCAGCCTCCGTCTTCCCAAAAGCCATCCCAAACTTTATGGTTTAAGCCAAACCCATTGGATTTACCGATTTCTGGTGTTCTTGGTCCAAAAAGTTGGTTATGGCTTGCTGCTATTATCTCATCCTCATTTGTCTTATTTCTCTTTGTTTTGGGCATGGTCACTCGTTTCTATATATACCCGATTGACCACAACACTGGTGATAGTTACCATTACTCCTTCACTTGCCTTTGGTACATGTTTTTGGTCTGTGCCTCCATTTTTATAGTCTCTAGTACAGTTTTCATCTGGTGCAAGAACCAAAATGCCATGGAAAGAAATCAAATTCAGAATGTAGAAGTACCCACAGAAACAATTGATGATAGAGAACTTGAAAGCTTTCCCCTTCATCATGAGTCCCTGATTGCTCAAGCTACCCAGGTGCATTATGGAACAAGGCCTGATCTCAAGAAAATTCTGTTGGAAACTAAAGGATCTGATATCGGAGTGTTGGCTTGTGGCCCAAAGAAGATGAGACATGAGGTTGCCAAACTTTGTTCATCCGGTTTGGCACAGAATCTGCACTTTGAGTCTATTAGCTTTAACTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000280 GO:0000793 GO:0000794 GO:0000795 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005856 GO:0005875 GO:0006139 GO:0006259 GO:0006310 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007127 GO:0007131 GO:0008150 GO:0008152 GO:0009987 GO:0015630 GO:0016043 GO:0022402 GO:0022414 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0035825 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0048285 GO:0051321 GO:0061982 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0099086 GO:0140013 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WEMBL

Protein Analysis

696

Amino Acids

79.08

Weight (kDa)

9.01

Isoelectric Point (pI)

40.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ferric_reduct	PF01794	163 - 282	7.2e-19	Ferric reductase like transmembrane component
FAD_binding_8	PF08022	319 - 414	4.8e-24	FAD-binding domain
NAD_binding_6	PF08030	422 - 680	7e-21	Ferric reductase NAD binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009532)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02930 AT3G02930 AT3G02930 AT5G16730
fragaria_vesca	FvH4_7g34141 FvH4_7g34141
malus_domestica	MD01G1237800.v1.1 MD01G1238300.v1.1
prunus_persica	Prupe.2G328200_v2.0.a1 Prupe.2G328200_v2.0.a1
pyrus_communis	pycom01g24550 pycom01g24570
rosa_chinensis	RchiOBHm_Chr1g0384501
rosa_laevigata	RLG00000026036
rosa_multiflora	Rmu_sc0006005.1_g000004
rosa_roxburghii	Rroxscaffold_4G00276650
rosa_rugosa	Rorug01G0448300
rosa_samantha	Rh1AG473500 Rh1BG431600 Rh1CG444700 Rh1DG464000
rosa_wichuraiana	Rw1G039910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1026, 1173
AatII	GACGTC	1 cut(s)	286
AccB1I	GGYRCC	2 cut(s)	70, 1080
AccB7I	CCANNNNNTGG	1 cut(s)	1433
AciI	CCGC	1 cut(s)	1118
AclWI	GGATC	2 cut(s)	877, 1981
AcoI	YGGCCR	1 cut(s)	607
AcsI	RAATTY	3 cut(s)	1096, 1824, 1953
AcvI	CACGTG	1 cut(s)	559
AcyI	GRCGYC	1 cut(s)	283
AfaI	GTAC	7 cut(s)	494, 593, 636, 1368, 1736, 1777, 1842
AfiI	CCNNNNNNNGG	3 cut(s)	252, 1433, 1574
AflIII	ACRYGT	4 cut(s)	556, 558, 856, 1737
AgsI	TTSAA	7 cut(s)	113, 129, 800, 1101, 1220, 1387, 1874
AjnI	CCWGG	1 cut(s)	1917
AjuI	GAANNNNNNNTTGG	2 cut(s)	1943, 1975
Alw21I	GWGCWC	2 cut(s)	704, 996
Alw26I	GTCTC	8 cut(s)	274, 375, 478, 964, 1164, 1487, 1774, 2008
AlwI	GGATC	2 cut(s)	877, 1981
AlwNI	CAGNNNCTG	1 cut(s)	2059
AoxI	GGCC	3 cut(s)	607, 1937, 1999
ApeKI	GCWGC	8 cut(s)	160, 191, 266, 950, 1411, 1501, 1504, 1610
ApoI	RAATTY	3 cut(s)	1096, 1824, 1953
Asp700I	GAANNNNTTC	2 cut(s)	544, 1878
AspS9I	GGNCC	4 cut(s)	1223, 1232, 1586, 2000
AsuC2I	CCSGG	1 cut(s)	891
AsuHPI	GGTGA	4 cut(s)	355, 775, 1282, 1712
AsuII	TTCGAA	1 cut(s)	469
AvaII	GGWCC	3 cut(s)	1223, 1232, 1586
BaeI	ACNNNNGTAYC	2 cut(s)	696, 729
BalI	TGGCCA	1 cut(s)	609
BanI	GGYRCC	2 cut(s)	70, 1080
BanII	GRGCYC	3 cut(s)	570, 704, 996
BauI	CACGAG	1 cut(s)	777
BbrPI	CACGTG	1 cut(s)	559
BbsI	GAAGAC	2 cut(s)	930, 1506
Bbv12I	GWGCWC	2 cut(s)	704, 996
BbvI	GCAGC	8 cut(s)	147, 203, 253, 937, 1398, 1513, 1516, 1597
BccI	CCATC	5 cut(s)	42, 319, 618, 1267, 1534
BceAI	ACGGC	3 cut(s)	315, 336, 1385
BcgI	CGANNNNNNTGC	2 cut(s)	1027, 1061
BciT130I	CCWGG	1 cut(s)	1919
BclI	TGATCA	1 cut(s)	12
BcnI	CCSGG	1 cut(s)	891
BcoDI	GTCTC	8 cut(s)	274, 375, 478, 964, 1164, 1487, 1774, 2008
BfaI	CTAG	7 cut(s)	218, 332, 374, 692, 1035, 1059, 1773
BisI	GCNGC	8 cut(s)	161, 192, 267, 951, 1412, 1502, 1505, 1611
BlsI	GCNGC	8 cut(s)	162, 193, 268, 952, 1413, 1503, 1506, 1612
Bme1390I	CCNGG	2 cut(s)	891, 1919
Bme18I	GGWCC	3 cut(s)	1223, 1232, 1586
BmgT120I	GGNCC	4 cut(s)	1223, 1232, 1586, 2000
BmiI	GGNNCC	3 cut(s)	72, 303, 1082
BmrFI	CCNGG	2 cut(s)	891, 1919
BmrI	ACTGGG	1 cut(s)	670
BmsI	GCATC	1 cut(s)	1047
BmuI	ACTGGG	1 cut(s)	670
BpiI	GAAGAC	2 cut(s)	930, 1506
BpmI	CTGGAG	2 cut(s)	298, 747
Bpu14I	TTCGAA	1 cut(s)	469
BpuEI	CTTGAG	4 cut(s)	217, 943, 1893, 1931
BpuMI	CCSGG	1 cut(s)	891
Bsa29I	ATCGAT	1 cut(s)	916
BsaAI	YACGTR	1 cut(s)	559
BsaBI	GATNNNNATC	1 cut(s)	1026
BsaHI	GRCGYC	1 cut(s)	283
BsaI	GGTCTC	2 cut(s)	375, 1164
BsaJI	CCNNGG	2 cut(s)	1809, 1917
BsaWI	WCCGGW	2 cut(s)	286, 2042
BsaXI	ACNNNNNCTCC	4 cut(s)	320, 350, 1700, 1730
Bsc4I	CCNNNNNNNGG	3 cut(s)	252, 1433, 1574
Bse1I	ACTGG	4 cut(s)	665, 1185, 1702, 2090
Bse3DI	GCAATG	3 cut(s)	756, 762, 1082
Bse8I	GATNNNNATC	1 cut(s)	1026
BseBI	CCWGG	1 cut(s)	1919
BseCI	ATCGAT	1 cut(s)	916
BseDI	CCNNGG	2 cut(s)	1809, 1917
BseGI	GGATG	4 cut(s)	53, 1526, 1622, 2039
BseJI	GATNNNNATC	1 cut(s)	1026
BseLI	CCNNNNNNNGG	3 cut(s)	252, 1433, 1574
BseMI	GCAATG	3 cut(s)	756, 762, 1082
BseMII	CTCAG	2 cut(s)	975, 1407
BseNI	ACTGG	4 cut(s)	665, 1185, 1702, 2090
BseRI	GAGGAG	1 cut(s)	294
BseXI	GCAGC	8 cut(s)	147, 203, 253, 937, 1398, 1513, 1516, 1597
BseYI	CCCAGC	1 cut(s)	510
BsgI	GTGCAG	1 cut(s)	2045
BshFI	GGCC	3 cut(s)	609, 1939, 2001
BshNI	GGYRCC	2 cut(s)	70, 1080
BshVI	ATCGAT	1 cut(s)	916
BsiHKAI	GWGCWC	2 cut(s)	704, 996
BsiSI	CCGG	3 cut(s)	287, 891, 2043
BslFI	GGGAC	2 cut(s)	163, 1882
BslI	CCNNNNNNNGG	3 cut(s)	252, 1433, 1574
BsmAI	GTCTC	8 cut(s)	274, 375, 478, 964, 1164, 1487, 1774, 2008
BsmBI	CGTCTC	1 cut(s)	274
BsmFI	GGGAC	2 cut(s)	163, 1882
BsmI	GAATGC	2 cut(s)	771, 1382
BsnI	GGCC	3 cut(s)	609, 1939, 2001
Bso31I	GGTCTC	2 cut(s)	375, 1164
Bsp119I	TTCGAA	1 cut(s)	469
Bsp1286I	GDGCHC	3 cut(s)	570, 704, 996
Bsp1407I	TGTACA	1 cut(s)	634
Bsp143I	GATC	7 cut(s)	12, 249, 882, 913, 1399, 1942, 1973
Bsp19I	CCATGG	1 cut(s)	1809
BspACI	CCGC	1 cut(s)	1118
BspANI	GGCC	3 cut(s)	609, 1939, 2001
BspCNI	CTCAG	2 cut(s)	974, 1406
BspDI	ATCGAT	1 cut(s)	916
BspHI	TCATGA	1 cut(s)	1891
BspLI	GGNNCC	3 cut(s)	72, 303, 1082
BspPI	GGATC	2 cut(s)	877, 1981
BspQI	GCTCTTC	1 cut(s)	550
BspT104I	TTCGAA	1 cut(s)	469
BspT107I	GGYRCC	2 cut(s)	70, 1080
BspTNI	GGTCTC	2 cut(s)	375, 1164
BsrDI	GCAATG	3 cut(s)	756, 762, 1082
BsrGI	TGTACA	1 cut(s)	634
BsrI	ACTGG	4 cut(s)	665, 1185, 1702, 2090
BssECI	CCNNGG	2 cut(s)	1809, 1917
BssMI	GATC	7 cut(s)	12, 249, 882, 913, 1399, 1942, 1973
BssNI	GRCGYC	1 cut(s)	283
BssSI	CACGAG	1 cut(s)	777
BssT1I	CCWWGG	1 cut(s)	1809
Bst2BI	CACGAG	1 cut(s)	777
Bst2UI	CCWGG	1 cut(s)	1919
Bst4CI	ACNGT	4 cut(s)	643, 936, 1093, 1780
Bst6I	CTCTTC	2 cut(s)	527, 550
BstACI	GRCGYC	1 cut(s)	283
BstAPI	GCANNNNNTGC	1 cut(s)	1420
BstAUI	TGTACA	1 cut(s)	634
BstBAI	YACGTR	1 cut(s)	559
BstBI	TTCGAA	1 cut(s)	469
BstC8I	GCNNGC	3 cut(s)	271, 1439, 1608
BstDEI	CTNAG	2 cut(s)	961, 1393
BstDSI	CCRYGG	1 cut(s)	1809
BstF5I	GGATG	4 cut(s)	53, 1526, 1622, 2039
BstKTI	GATC	7 cut(s)	15, 252, 885, 916, 1402, 1945, 1976
BstMAI	GTCTC	8 cut(s)	274, 375, 478, 964, 1164, 1487, 1774, 2008
BstMBI	GATC	7 cut(s)	12, 249, 882, 913, 1399, 1942, 1973
BstMWI	GCNNNNNNNGC	2 cut(s)	1174, 1420
BstNI	CCWGG	1 cut(s)	1919
BstNSI	RCATGY	2 cut(s)	860, 1741
BstSCI	CCNGG	2 cut(s)	889, 1917
BstV1I	GCAGC	8 cut(s)	147, 203, 253, 937, 1398, 1513, 1516, 1597
BstV2I	GAAGAC	2 cut(s)	930, 1506
BstX2I	RGATCY	1 cut(s)	1973
BstXI	CCANNNNNNTGG	2 cut(s)	1596, 1697
BstYI	RGATCY	1 cut(s)	1973
Bsu15I	ATCGAT	1 cut(s)	916
BsuRI	GGCC	3 cut(s)	609, 1939, 2001
BsuTUI	ATCGAT	1 cut(s)	916
BtgI	CCRYGG	1 cut(s)	1809
BtgZI	GCGATG	1 cut(s)	338
BtsCI	GGATG	4 cut(s)	53, 1526, 1622, 2039
BtsI	GCAGTG	2 cut(s)	1294, 1406
BtsIMutI	CAGTG	4 cut(s)	1098, 1294, 1406, 1695
Cac8I	GCNNGC	3 cut(s)	271, 1439, 1608
CaiI	CAGNNNCTG	1 cut(s)	2059
CciI	TCATGA	1 cut(s)	1891
Cfr13I	GGNCC	4 cut(s)	1223, 1232, 1586, 2000
ClaI	ATCGAT	1 cut(s)	916
Csp6I	GTAC	7 cut(s)	493, 592, 635, 1367, 1735, 1776, 1841
CviQI	GTAC	7 cut(s)	493, 592, 635, 1367, 1735, 1776, 1841
DdeI	CTNAG	2 cut(s)	961, 1393
DpnI	GATC	7 cut(s)	14, 251, 884, 915, 1401, 1944, 1975
DpnII	GATC	7 cut(s)	12, 249, 882, 913, 1399, 1942, 1973
EaeI	YGGCCR	1 cut(s)	607
Eam1104I	CTCTTC	2 cut(s)	527, 550
EarI	CTCTTC	2 cut(s)	527, 550
EciI	GGCGGA	1 cut(s)	1133
Ecl136II	GAGCTC	2 cut(s)	702, 994
Eco130I	CCWWGG	1 cut(s)	1809
Eco147I	AGGCCT	1 cut(s)	1939
Eco24I	GRGCYC	3 cut(s)	570, 704, 996
Eco31I	GGTCTC	2 cut(s)	375, 1164
Eco32I	GATATC	1 cut(s)	1981
Eco47I	GGWCC	3 cut(s)	1223, 1232, 1586
Eco53kI	GAGCTC	2 cut(s)	702, 994
Eco72I	CACGTG	1 cut(s)	559
EcoICRI	GAGCTC	2 cut(s)	702, 994
EcoO109I	RGGNCCY	1 cut(s)	1223
EcoRI	GAATTC	1 cut(s)	1096
EcoRII	CCWGG	1 cut(s)	1917
EcoRV	GATATC	1 cut(s)	1981
EcoT14I	CCWWGG	1 cut(s)	1809
EcoT22I	ATGCAT	1 cut(s)	417
EcoT38I	GRGCYC	3 cut(s)	570, 704, 996
ErhI	CCWWGG	1 cut(s)	1809
Esp3I	CGTCTC	1 cut(s)	274
FaqI	GGGAC	2 cut(s)	163, 1882
FauNDI	CATATG	3 cut(s)	411, 417, 506
FbaI	TGATCA	1 cut(s)	12
Fnu4HI	GCNGC	8 cut(s)	161, 192, 267, 951, 1412, 1502, 1505, 1611
FokI	GGATG	4 cut(s)	60, 1513, 1609, 2026
FriOI	GRGCYC	3 cut(s)	570, 704, 996
Fsp4HI	GCNGC	8 cut(s)	161, 192, 267, 951, 1412, 1502, 1505, 1611
FspBI	CTAG	7 cut(s)	218, 332, 374, 692, 1035, 1059, 1773
GluI	GCNGC	8 cut(s)	161, 192, 267, 951, 1412, 1502, 1505, 1611
GsaI	CCCAGC	1 cut(s)	514
GsuI	CTGGAG	2 cut(s)	298, 747
HaeIII	GGCC	3 cut(s)	609, 1939, 2001
HapII	CCGG	3 cut(s)	287, 891, 2043
Hin1I	GRCGYC	1 cut(s)	283
HindIII	AAGCTT	2 cut(s)	1166, 1876
HinfI	GANTC	7 cut(s)	535, 578, 670, 894, 1895, 2056, 2069
HpaII	CCGG	3 cut(s)	287, 891, 2043
HphI	GGTGA	4 cut(s)	355, 775, 1282, 1712
Hpy166II	GTNNAC	2 cut(s)	637, 1367
Hpy188I	TCNGA	7 cut(s)	225, 577, 1319, 1447, 1830, 1978, 1985
Hpy188III	TCNNGA	5 cut(s)	277, 942, 1387, 1892, 1948
Hpy8I	GTNNAC	2 cut(s)	637, 1367
Hpy99I	CGWCG	1 cut(s)	262
HpyAV	CCTTC	5 cut(s)	896, 1214, 1452, 1729, 1895
HpyCH4III	ACNGT	4 cut(s)	643, 936, 1093, 1780
HpyCH4IV	ACGT	3 cut(s)	283, 558, 849
HpyF10VI	GCNNNNNNNGC	2 cut(s)	1174, 1420
HpyF3I	CTNAG	2 cut(s)	961, 1393
HpySE526I	ACGT	3 cut(s)	283, 558, 849
Hsp92I	GRCGYC	1 cut(s)	283
Ksp22I	TGATCA	1 cut(s)	12
Kzo9I	GATC	7 cut(s)	12, 249, 882, 913, 1399, 1942, 1973
LguI	GCTCTTC	1 cut(s)	550
LmnI	GCTCC	4 cut(s)	307, 328, 699, 1198
Lsp1109I	GCAGC	8 cut(s)	147, 203, 253, 937, 1398, 1513, 1516, 1597
LweI	GCATC	1 cut(s)	1047
MaeI	CTAG	7 cut(s)	218, 332, 374, 692, 1035, 1059, 1773
MaeII	ACGT	3 cut(s)	283, 558, 849
MaeIII	GTNAC	7 cut(s)	295, 316, 532, 763, 1483, 1660, 1706
MalI	GATC	7 cut(s)	14, 251, 884, 915, 1401, 1944, 1975
MboI	GATC	7 cut(s)	12, 249, 882, 913, 1399, 1942, 1973
MboII	GAAGA	7 cut(s)	203, 514, 537, 889, 930, 1506, 2020
MfeI	CAATTG	4 cut(s)	738, 987, 1463, 1854
MflI	RGATCY	1 cut(s)	1973
MhlI	GDGCHC	3 cut(s)	570, 704, 996
MlsI	TGGCCA	1 cut(s)	609
MluNI	TGGCCA	1 cut(s)	609
MlyI	GAGTC	5 cut(s)	529, 587, 664, 1904, 2078
MmeI	TCCRAC	2 cut(s)	25, 1941
Mox20I	TGGCCA	1 cut(s)	609
Mph1103I	ATGCAT	1 cut(s)	417
MroXI	GAANNNNTTC	2 cut(s)	544, 1878
MscI	TGGCCA	1 cut(s)	609
MseI	TTAA	3 cut(s)	1140, 1545, 2082
MslI	CAYNNNNRTG	2 cut(s)	323, 861
Msp20I	TGGCCA	1 cut(s)	609
MspA1I	CMGCKG	1 cut(s)	1397
MspI	CCGG	3 cut(s)	287, 891, 2043
MspR9I	CCNGG	2 cut(s)	891, 1919
MunI	CAATTG	4 cut(s)	738, 987, 1463, 1854
Mva1269I	GAATGC	2 cut(s)	771, 1382
MvaI	CCWGG	1 cut(s)	1919
MwoI	GCNNNNNNNGC	2 cut(s)	1174, 1420
NciI	CCSGG	1 cut(s)	891
NcoI	CCATGG	1 cut(s)	1809
NdeI	CATATG	3 cut(s)	411, 417, 506
NdeII	GATC	7 cut(s)	12, 249, 882, 913, 1399, 1942, 1973
NlaIV	GGNNCC	3 cut(s)	72, 303, 1082
NmuCI	GTSAC	4 cut(s)	316, 532, 763, 1660
NsiI	ATGCAT	1 cut(s)	417
NspI	RCATGY	2 cut(s)	860, 1741
NspV	TTCGAA	1 cut(s)	469
PagI	TCATGA	1 cut(s)	1891
PceI	AGGCCT	1 cut(s)	1939
PciI	ACATGT	2 cut(s)	856, 1737
PciSI	GCTCTTC	1 cut(s)	550
PctI	GAATGC	2 cut(s)	771, 1382
PdmI	GAANNNNTTC	2 cut(s)	544, 1878
PfeI	GAWTC	2 cut(s)	894, 2056
PflMI	CCANNNNNTGG	1 cut(s)	1433
PfoI	TCCNGGA	1 cut(s)	889
PkrI	GCNGC	8 cut(s)	162, 193, 268, 952, 1413, 1503, 1506, 1612
PleI	GAGTC	5 cut(s)	529, 586, 664, 1903, 2077
PmaCI	CACGTG	1 cut(s)	559
PmlI	CACGTG	1 cut(s)	559
PpsI	GAGTC	5 cut(s)	529, 586, 664, 1903, 2077
Ppu21I	YACGTR	1 cut(s)	559
PpuMI	RGGWCCY	1 cut(s)	1223
PscI	ACATGT	2 cut(s)	856, 1737
PsiI	TTATAA	2 cut(s)	1026, 1173
Psp124BI	GAGCTC	2 cut(s)	704, 996
Psp5II	RGGWCCY	1 cut(s)	1223
Psp6I	CCWGG	1 cut(s)	1917
PspCI	CACGTG	1 cut(s)	559
PspFI	CCCAGC	1 cut(s)	510
PspGI	CCWGG	1 cut(s)	1917
PspN4I	GGNNCC	3 cut(s)	72, 303, 1082
PspPI	GGNCC	4 cut(s)	1223, 1232, 1586, 2000
PspPPI	RGGWCCY	1 cut(s)	1223
PstNI	CAGNNNCTG	1 cut(s)	2059
PsuI	RGATCY	1 cut(s)	1973
PvuII	CAGCTG	1 cut(s)	1397
RsaI	GTAC	7 cut(s)	494, 593, 636, 1368, 1736, 1777, 1842
RsaNI	GTAC	7 cut(s)	493, 592, 635, 1367, 1735, 1776, 1841
RseI	CAYNNNNRTG	2 cut(s)	323, 861
SacI	GAGCTC	2 cut(s)	704, 996
SapI	GCTCTTC	1 cut(s)	550
SaqAI	TTAA	3 cut(s)	1140, 1545, 2082
SatI	GCNGC	8 cut(s)	161, 192, 267, 951, 1412, 1502, 1505, 1611
Sau3AI	GATC	7 cut(s)	12, 249, 882, 913, 1399, 1942, 1973
Sau96I	GGNCC	4 cut(s)	1223, 1232, 1586, 2000
SchI	GAGTC	5 cut(s)	529, 587, 664, 1904, 2078
ScrFI	CCNGG	2 cut(s)	891, 1919
SduI	GDGCHC	3 cut(s)	570, 704, 996
SfaNI	GCATC	1 cut(s)	1047
SfuI	TTCGAA	1 cut(s)	469
SinI	GGWCC	3 cut(s)	1223, 1232, 1586
SmiMI	CAYNNNNRTG	2 cut(s)	323, 861
SmlI	CTYRAG	4 cut(s)	196, 922, 1908, 1946
SmoI	CTYRAG	4 cut(s)	196, 922, 1908, 1946
SseBI	AGGCCT	1 cut(s)	1939
SsiI	CCGC	1 cut(s)	1118
SspMI	CTAG	7 cut(s)	218, 332, 374, 692, 1035, 1059, 1773
SstI	GAGCTC	2 cut(s)	704, 996
StuI	AGGCCT	1 cut(s)	1939
StyD4I	CCNGG	2 cut(s)	889, 1917
StyI	CCWWGG	1 cut(s)	1809
TaaI	ACNGT	4 cut(s)	643, 936, 1093, 1780
TaiI	ACGT	3 cut(s)	286, 561, 852
TaqI	TCGA	6 cut(s)	469, 538, 548, 581, 704, 916
TatI	WGTACW	2 cut(s)	634, 1775
TfiI	GAWTC	2 cut(s)	894, 2056
Tru1I	TTAA	3 cut(s)	1140, 1545, 2082
Tru9I	TTAA	3 cut(s)	1140, 1545, 2082
TscAI	CASTG	4 cut(s)	1098, 1294, 1413, 1702
TseFI	GTSAC	4 cut(s)	316, 532, 763, 1660
TseI	GCWGC	8 cut(s)	160, 191, 266, 950, 1411, 1501, 1504, 1610
Tsp45I	GTSAC	4 cut(s)	316, 532, 763, 1660
TspDTI	ATGAA	9 cut(s)	17, 203, 434, 452, 640, 1230, 1774, 1877, 2028
TspGWI	ACGGA	2 cut(s)	802, 1500
TspRI	CASTG	4 cut(s)	1098, 1294, 1413, 1702
Van91I	CCANNNNNTGG	1 cut(s)	1433
VpaK11BI	GGWCC	3 cut(s)	1223, 1232, 1586
XapI	RAATTY	3 cut(s)	1096, 1824, 1953
XceI	RCATGY	2 cut(s)	860, 1741
XcmI	CCANNNNNNNNNTGG	2 cut(s)	602, 1925
XmnI	GAANNNNTTC	2 cut(s)	544, 1878
XspI	CTAG	7 cut(s)	218, 332, 374, 692, 1035, 1059, 1773
ZraI	GACGTC	1 cut(s)	284
Zsp2I	ATGCAT	1 cut(s)	417

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.