pycom02g00850

Trafficking protein particle complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0015824
Physical Location & Seq
Reverse (-)
513476 .. 516507
3032 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 765 bp
ATGGCCCGATTGGGATGTCATTCGGTTGTTGATAGGTCAAACAATAGACGTGTTGTGTCGTGGAACTTTTGGAAGCGTAGTCGAGTGTTCTGTGCTTCCGAAAATCCGATCCGCAACACCACCAACTCTGCTTCTTCGAATTTCTTCAAATCCAGAAGAAAAAAGAAGAGTTGGGGAAGAATGATTGGAGCAGGGAAGATCAAGCAGTACTCCAATGTCCTCGACAAGCCCCTCAGCAAGGGCAAACAAGAGGTCAGTTTGAGTGCGTTTGCGTTCTTGTTTTCGGAGCTTGTGCAGTACAACCAGACGCAGGTTGACAACATAGCTGAGCTAGAACGAAGGCTGGAGGATGCAGGATATGCTGTTGGGGCTCGTGTTCTGGAGCTTCTTTGCCATCGGGAAAAGGGAAACAGAAGGGAAACGCGGTTGTTGGGAATCCTGTCTTTTGTGCATAGCACTGTTTGGAAGGTGTTATTTGGAAAGGTAGCTGATTCCCTTGAGAAAGGCACTGAACATGAAGATGAGTACATGATTAGTGAGAAGGAGCTCCTTGTGAACCGATTTATTTCGATTCCAAAAGACATGGGAACCTTTAATTGTGGAGCATTTGTTGCCGGAATTGTAAGGGGTGTTTTGGACGGTGCTGGTTTTCCAGCTGTGGTAACAGCTCATTTTGTACCAGTGGAGGGACAGCAACGACCTCGAACAACCATCTTGATAAAATTTGCTGAAGAGGTACTACGAAGAGAAGCAAGGTTAGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TRAPP

Protein Analysis

255

Amino Acids

28.74

Weight (kDa)

9.9

Isoelectric Point (pI)

36.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TRAPP PF04051 90 - 242 9.4e-47 Transport protein particle (TRAPP) component
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015824)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G58030
fragaria_vesca FvH4_1g01170 FvH4_1g01170
malus_domestica MD02G1009800.v1.1
prunus_persica Prupe.7G260200_v2.0.a1 Prupe.7G260200_v2.0.a1
pyrus_communis pycom02g00850 pycom15g13890
rosa_chinensis RchiOBHm_Chr2g0085961
rosa_laevigata RLG00000015730
rosa_multiflora Rmu_ssc0000355.1_g000026
rosa_roxburghii Rroxscaffold_2G00154890
rosa_rugosa Rorug01G0464700
rosa_samantha Rh2AG013900
rosa_wichuraiana Rw2G001230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 301
AccII CGCG 1 cut(s) 424
AciI CCGC 2 cut(s) 112, 424
AclWI GGATC 1 cut(s) 103
AcsI RAATTY 2 cut(s) 139, 722
AcuI CTGAAG 1 cut(s) 750
AfaI GTAC 5 cut(s) 209, 299, 527, 678, 738
AfiI CCNNNNNNNGG 3 cut(s) 238, 310, 686
AflIII ACRYGT 1 cut(s) 49
AgsI TTSAA 1 cut(s) 148
AjiI CACGTC 1 cut(s) 50
AluBI AGCT 8 cut(s) 289, 326, 331, 385, 488, 547, 656, 668
AluI AGCT 8 cut(s) 289, 326, 331, 385, 488, 547, 656, 668
Alw21I GWGCWC 1 cut(s) 549
AlwI GGATC 1 cut(s) 103
AoxI GGCC 1 cut(s) 3
ApoI RAATTY 2 cut(s) 139, 722
ArsI GACNNNNNNTTYG 2 cut(s) 237, 269
Asp700I GAANNNNTTC 1 cut(s) 143
AspS9I GGNCC 1 cut(s) 4
AsuII TTCGAA 1 cut(s) 137
BanII GRGCYC 2 cut(s) 373, 549
BarI GAAGNNNNNNTAC 2 cut(s) 723, 755
BauI CACGAG 1 cut(s) 372
Bbv12I GWGCWC 1 cut(s) 549
BbvCI CCTCAGC 1 cut(s) 233
BccI CCATC 2 cut(s) 402, 719
BcgI CGANNNNNNTGC 2 cut(s) 683, 717
BfaI CTAG 1 cut(s) 332
BfuAI ACCTGC 1 cut(s) 301
BlpI GCTNAGC 1 cut(s) 327
BmcAI AGTACT 1 cut(s) 209
BmgBI CACGTC 1 cut(s) 50
BmgT120I GGNCC 1 cut(s) 4
BmiI GGNNCC 1 cut(s) 589
BmsI GCATC 1 cut(s) 340
BpmI CTGGAG 2 cut(s) 365, 401
Bpu10I CCTNAGC 1 cut(s) 233
Bpu1102I GCTNAGC 1 cut(s) 327
Bpu14I TTCGAA 1 cut(s) 137
BpuEI CTTGAG 1 cut(s) 518
BsaXI ACNNNNNCTCC 2 cut(s) 594, 624
Bsc4I CCNNNNNNNGG 3 cut(s) 238, 310, 686
Bse1I ACTGG 1 cut(s) 680
BseGI GGATG 2 cut(s) 20, 355
BseLI CCNNNNNNNGG 3 cut(s) 238, 310, 686
BseMII CTCAG 2 cut(s) 247, 318
BseNI ACTGG 1 cut(s) 680
BsgI GTGCAG 1 cut(s) 314
Bsh1236I CGCG 1 cut(s) 424
BshFI GGCC 1 cut(s) 5
BsiHKAI GWGCWC 1 cut(s) 549
BsiSI CCGG 1 cut(s) 615
BslFI GGGAC 1 cut(s) 702
BslI CCNNNNNNNGG 3 cut(s) 238, 310, 686
BsmFI GGGAC 1 cut(s) 702
BsnI GGCC 1 cut(s) 5
Bsp119I TTCGAA 1 cut(s) 137
Bsp1286I GDGCHC 2 cut(s) 373, 549
Bsp143I GATC 2 cut(s) 108, 198
Bsp1720I GCTNAGC 1 cut(s) 327
BspACI CCGC 2 cut(s) 112, 424
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 2 cut(s) 246, 319
BspFNI CGCG 1 cut(s) 424
BspLI GGNNCC 1 cut(s) 589
BspMI ACCTGC 1 cut(s) 301
BspPI GGATC 1 cut(s) 103
BspT104I TTCGAA 1 cut(s) 137
BsrI ACTGG 1 cut(s) 680
BssMI GATC 2 cut(s) 108, 198
BssSI CACGAG 1 cut(s) 372
Bst2BI CACGAG 1 cut(s) 372
Bst4CI ACNGT 2 cut(s) 460, 641
Bst6I CTCTTC 3 cut(s) 161, 726, 739
BstAPI GCANNNNNTGC 2 cut(s) 359, 611
BstBI TTCGAA 1 cut(s) 137
BstDEI CTNAG 2 cut(s) 233, 327
BstENI CCTNNNNNAGG 1 cut(s) 236
BstF5I GGATG 2 cut(s) 20, 355
BstFNI CGCG 1 cut(s) 424
BstKTI GATC 2 cut(s) 111, 201
BstMBI GATC 2 cut(s) 108, 198
BstMWI GCNNNNNNNGC 3 cut(s) 359, 368, 611
BstUI CGCG 1 cut(s) 424
BsuRI GGCC 1 cut(s) 5
BtrI CACGTC 1 cut(s) 50
BtsCI GGATG 2 cut(s) 20, 355
BtsIMutI CAGTG 3 cut(s) 456, 507, 687
BveI ACCTGC 1 cut(s) 301
Cfr13I GGNCC 1 cut(s) 4
CseI GACGC 1 cut(s) 316
Csp6I GTAC 5 cut(s) 208, 298, 526, 677, 737
CviAII CATG 3 cut(s) 515, 529, 583
CviQI GTAC 5 cut(s) 208, 298, 526, 677, 737
DdeI CTNAG 2 cut(s) 233, 327
DpnI GATC 2 cut(s) 110, 200
DpnII GATC 2 cut(s) 108, 198
Eam1104I CTCTTC 3 cut(s) 161, 726, 739
EarI CTCTTC 3 cut(s) 161, 726, 739
Ecl136II GAGCTC 1 cut(s) 547
Eco24I GRGCYC 2 cut(s) 373, 549
Eco53kI GAGCTC 1 cut(s) 547
Eco57I CTGAAG 1 cut(s) 750
EcoICRI GAGCTC 1 cut(s) 547
EcoNI CCTNNNNNAGG 1 cut(s) 236
EcoT38I GRGCYC 2 cut(s) 373, 549
FaeI CATG 3 cut(s) 518, 532, 586
FaiI YATR 6 cut(s) 323, 360, 453, 516, 530, 584
FaqI GGGAC 1 cut(s) 702
FatI CATG 3 cut(s) 514, 528, 582
FokI GGATG 2 cut(s) 27, 362
FriOI GRGCYC 2 cut(s) 373, 549
FspBI CTAG 1 cut(s) 332
GsuI CTGGAG 2 cut(s) 365, 401
HaeIII GGCC 1 cut(s) 5
HapII CCGG 1 cut(s) 615
HgaI GACGC 1 cut(s) 316
Hin1II CATG 3 cut(s) 518, 532, 586
HincII GTYRAC 1 cut(s) 316
HindII GTYRAC 1 cut(s) 316
HinfI GANTC 3 cut(s) 435, 491, 571
HpaII CCGG 1 cut(s) 615
Hpy166II GTNNAC 2 cut(s) 316, 556
Hpy188I TCNGA 3 cut(s) 100, 108, 286
Hpy188III TCNNGA 4 cut(s) 153, 380, 398, 715
Hpy8I GTNNAC 2 cut(s) 316, 556
HpyAV CCTTC 4 cut(s) 333, 408, 460, 535
HpyCH4III ACNGT 2 cut(s) 460, 641
HpyCH4IV ACGT 1 cut(s) 49
HpyCH4V TGCA 3 cut(s) 295, 353, 451
HpyF10VI GCNNNNNNNGC 3 cut(s) 359, 368, 611
HpyF3I CTNAG 2 cut(s) 233, 327
HpySE526I ACGT 1 cut(s) 49
Hsp92II CATG 3 cut(s) 518, 532, 586
Kzo9I GATC 2 cut(s) 108, 198
LmnI GCTCC 6 cut(s) 188, 286, 382, 544, 552, 602
LweI GCATC 1 cut(s) 340
MaeI CTAG 1 cut(s) 332
MaeII ACGT 1 cut(s) 49
MaeIII GTNAC 1 cut(s) 661
MalI GATC 2 cut(s) 110, 200
MboI GATC 2 cut(s) 108, 198
MboII GAAGA 9 cut(s) 126, 136, 168, 178, 189, 208, 530, 743, 756
MhlI GDGCHC 2 cut(s) 373, 549
MluCI AATT 4 cut(s) 139, 595, 618, 722
MnlI CCTC 7 cut(s) 230, 242, 244, 340, 679, 711, 727
MroXI GAANNNNTTC 1 cut(s) 143
MseI TTAA 1 cut(s) 594
MslI CAYNNNNRTG 1 cut(s) 519
MspA1I CMGCKG 1 cut(s) 656
MspI CCGG 1 cut(s) 615
MvnI CGCG 1 cut(s) 424
MwoI GCNNNNNNNGC 3 cut(s) 359, 368, 611
NdeII GATC 2 cut(s) 108, 198
NlaIII CATG 3 cut(s) 518, 532, 586
NlaIV GGNNCC 1 cut(s) 589
NspV TTCGAA 1 cut(s) 137
PdmI GAANNNNTTC 1 cut(s) 143
PfeI GAWTC 3 cut(s) 435, 491, 571
Psp124BI GAGCTC 1 cut(s) 549
PspN4I GGNNCC 1 cut(s) 589
PspPI GGNCC 1 cut(s) 4
PvuII CAGCTG 1 cut(s) 656
RsaI GTAC 5 cut(s) 209, 299, 527, 678, 738
RsaNI GTAC 5 cut(s) 208, 298, 526, 677, 737
RseI CAYNNNNRTG 1 cut(s) 519
SacI GAGCTC 1 cut(s) 549
SaqAI TTAA 1 cut(s) 594
Sau3AI GATC 2 cut(s) 108, 198
Sau96I GGNCC 1 cut(s) 4
ScaI AGTACT 1 cut(s) 209
SduI GDGCHC 2 cut(s) 373, 549
SfaNI GCATC 1 cut(s) 340
SfuI TTCGAA 1 cut(s) 137
SmiMI CAYNNNNRTG 1 cut(s) 519
SmlI CTYRAG 1 cut(s) 497
SmoI CTYRAG 1 cut(s) 497
Sse9I AATT 4 cut(s) 139, 595, 618, 722
SsiI CCGC 2 cut(s) 112, 424
SspMI CTAG 1 cut(s) 332
SstI GAGCTC 1 cut(s) 549
TaaI ACNGT 2 cut(s) 460, 641
TaiI ACGT 1 cut(s) 52
TaqI TCGA 5 cut(s) 82, 137, 222, 569, 703
TasI AATT 4 cut(s) 139, 595, 618, 722
TatI WGTACW 3 cut(s) 207, 297, 525
TfiI GAWTC 3 cut(s) 435, 491, 571
Tru1I TTAA 1 cut(s) 594
Tru9I TTAA 1 cut(s) 594
TscAI CASTG 3 cut(s) 463, 514, 687
TspDTI ATGAA 1 cut(s) 531
TspRI CASTG 3 cut(s) 463, 514, 687
XagI CCTNNNNNAGG 1 cut(s) 236
XapI RAATTY 2 cut(s) 139, 722
XmnI GAANNNNTTC 1 cut(s) 143
XspI CTAG 1 cut(s) 332
ZrmI AGTACT 1 cut(s) 209
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.