Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0018923

Physical Location & Seq

Genomic Coordinates Reverse (-)

1228820 .. 1229704

Gene Structure 885 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g02040.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGGAGTCCAGCACGTACAGTTTTGGGACTCCCACACCTACCATCCCCTGGTCTAGGAAACTTTTATCTTCATTCACTACTGCCATATCGGTAGAGTTGTCATCACTCGTGGAAACACAAGATGAGAACACCAGCGATGAATTTCAACTTCTCTGGGCAGAGAAGCCTAAATGTTTGCGGAGGAGTCAGCCTTCGATAATCTTCGACGCTGCATTTCTCCAACTCCATGCACCCATCCTTGGAAAAACTCTTGATCACCCAAACCTGTCCATTTCAAATCCAACCATCACCTTCTGGAGTTCCACCTGTGGTGAACAAACTGAGTTGGATTACCCCCATACCTTACTTCATGTCTTAGACAAGCTCCGGATAAACAGAAGAATAAGCCTCCATAAGAGAAGCCCACCACTTCAAAGATGTCAAACTAGACAGGAATCTGCTACCGCTCCACCAAGATATAGGGTCAATGCTATACATAATATAGGCTCGAAAAGAGTAGAACTGCTAGAGGACACGATAGGCGGTGAGCTCAAAGAAATGCCTCCAGGTTCAAGTTTGAGAAGGAAAAGGTTGGAACAAAGAAGGGAGAGGCATTGTAATGGTCACGGCCCGGGCATCCAGACTTTCATAAGCATGGATTTTTTTGCAGGGGAACGAGGATTCGCAAGACAACCAAGATATCTGGAATGCAGAGTGGATCTTCGAGTTGTTGAGAAAGGGATAGTTTGGCTGTCTCAGTACTCTTTGCTTCTTCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04550 map04550

Pfam Domains

Protein Families

Rif1_N

Protein Analysis

253

Amino Acids

28.82

Weight (kDa)

9.18

Isoelectric Point (pI)

55.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018923)

Species	Orthologous Gene IDs
pyrus_communis	pycom02g02040
rosa_multiflora	Rmu_co8442899.1_g000002 Rmu_sc0002154.1_g000006 Rmu_sc0003022.1_g000005 Rmu_sc0005621.1_g000001 Rmu_sc0006662.1_g000007 Rmu_sc0010071.1_g000004 Rmu_sc0029770.1_g000001 Rmu_sc0036647.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	48
AccBSI	CCGCTC	1 cut(s)	446
AccIII	TCCGGA	1 cut(s)	366
AciI	CCGC	3 cut(s)	178, 444, 522
AclWI	GGATC	1 cut(s)	705
AcsI	RAATTY	1 cut(s)	140
AfaI	GTAC	2 cut(s)	17, 740
AfiI	CCNNNNNNNGG	3 cut(s)	48, 54, 239
AgsI	TTSAA	4 cut(s)	146, 276, 413, 552
AjnI	CCWGG	2 cut(s)	47, 544
AluBI	AGCT	2 cut(s)	364, 529
AluI	AGCT	2 cut(s)	364, 529
Alw21I	GWGCWC	1 cut(s)	531
Alw26I	GTCTC	1 cut(s)	738
AlwI	GGATC	1 cut(s)	705
Ama87I	CYCGRG	1 cut(s)	610
Aor13HI	TCCGGA	1 cut(s)	366
AoxI	GGCC	1 cut(s)	607
ApeKI	GCWGC	1 cut(s)	209
ApoI	RAATTY	1 cut(s)	140
AspS9I	GGNCC	1 cut(s)	608
AsuC2I	CCSGG	2 cut(s)	611, 612
AsuHPI	GGTGA	4 cut(s)	248, 280, 323, 536
AvaI	CYCGRG	1 cut(s)	610
BanII	GRGCYC	1 cut(s)	531
BauI	CACGAG	1 cut(s)	107
Bbv12I	GWGCWC	1 cut(s)	531
BbvI	GCAGC	1 cut(s)	196
BccI	CCATC	3 cut(s)	50, 242, 293
BceAI	ACGGC	1 cut(s)	622
BciT130I	CCWGG	2 cut(s)	49, 546
BclI	TGATCA	1 cut(s)	253
BcnI	CCSGG	2 cut(s)	611, 612
BcoDI	GTCTC	1 cut(s)	738
BfaI	CTAG	3 cut(s)	54, 426, 506
BisI	GCNGC	1 cut(s)	210
BlsI	GCNGC	1 cut(s)	211
BmcAI	AGTACT	1 cut(s)	740
Bme1390I	CCNGG	4 cut(s)	49, 546, 611, 612
BmeT110I	CYCGRG	1 cut(s)	610
BmgT120I	GGNCC	1 cut(s)	608
BmrFI	CCNGG	4 cut(s)	49, 546, 611, 612
BmsI	GCATC	1 cut(s)	624
BpmI	CTGGAG	2 cut(s)	316, 528
BpuMI	CCSGG	2 cut(s)	611, 612
BsaAI	YACGTR	1 cut(s)	15
BsaJI	CCNNGG	3 cut(s)	47, 238, 610
BsaWI	WCCGGW	1 cut(s)	366
Bsc4I	CCNNNNNNNGG	3 cut(s)	48, 54, 239
BseAI	TCCGGA	1 cut(s)	366
BseBI	CCWGG	2 cut(s)	49, 546
BseDI	CCNNGG	3 cut(s)	47, 238, 610
BseGI	GGATG	3 cut(s)	42, 234, 615
BseLI	CCNNNNNNNGG	3 cut(s)	48, 54, 239
BseMII	CTCAG	2 cut(s)	312, 749
BseRI	GAGGAG	1 cut(s)	196
BseXI	GCAGC	1 cut(s)	196
BshFI	GGCC	1 cut(s)	609
BsiHKAI	GWGCWC	1 cut(s)	531
BsiHKCI	CYCGRG	1 cut(s)	610
BsiSI	CCGG	2 cut(s)	367, 611
BslFI	GGGAC	1 cut(s)	40
BslI	CCNNNNNNNGG	3 cut(s)	48, 54, 239
BsmAI	GTCTC	1 cut(s)	738
BsmFI	GGGAC	1 cut(s)	40
BsmI	GAATGC	1 cut(s)	692
BsnI	GGCC	1 cut(s)	609
BsoBI	CYCGRG	1 cut(s)	610
Bsp1286I	GDGCHC	1 cut(s)	531
Bsp13I	TCCGGA	1 cut(s)	366
Bsp143I	GATC	2 cut(s)	253, 697
BspACI	CCGC	3 cut(s)	178, 444, 522
BspANI	GGCC	1 cut(s)	609
BspCNI	CTCAG	2 cut(s)	313, 748
BspEI	TCCGGA	1 cut(s)	366
BspPI	GGATC	1 cut(s)	705
BsrBI	CCGCTC	1 cut(s)	446
BssECI	CCNNGG	3 cut(s)	47, 238, 610
BssMI	GATC	2 cut(s)	253, 697
BssSI	CACGAG	1 cut(s)	107
BssT1I	CCWWGG	1 cut(s)	238
Bst2BI	CACGAG	1 cut(s)	107
Bst2UI	CCWGG	2 cut(s)	49, 546
Bst4CI	ACNGT	1 cut(s)	20
BstBAI	YACGTR	1 cut(s)	15
BstDEI	CTNAG	3 cut(s)	321, 355, 735
BstENI	CCTNNNNNAGG	1 cut(s)	52
BstF5I	GGATG	3 cut(s)	42, 234, 615
BstKTI	GATC	2 cut(s)	256, 700
BstMAI	GTCTC	1 cut(s)	738
BstMBI	GATC	2 cut(s)	253, 697
BstNI	CCWGG	2 cut(s)	49, 546
BstSCI	CCNGG	4 cut(s)	47, 544, 609, 610
BstV1I	GCAGC	1 cut(s)	196
BstX2I	RGATCY	1 cut(s)	697
BstYI	RGATCY	1 cut(s)	697
BsuRI	GGCC	1 cut(s)	609
BtgZI	GCGATG	1 cut(s)	150
BtsCI	GGATG	3 cut(s)	42, 234, 615
Cfr13I	GGNCC	1 cut(s)	608
Cfr9I	CCCGGG	1 cut(s)	610
CseI	GACGC	1 cut(s)	215
Csp6I	GTAC	2 cut(s)	16, 739
CviAII	CATG	3 cut(s)	227, 350, 634
CviJI	RGCY	9 cut(s)	166, 190, 364, 387, 402, 486, 529, 609, 730
CviKI_1	RGCY	9 cut(s)	166, 190, 364, 387, 402, 486, 529, 609, 730
CviQI	GTAC	2 cut(s)	16, 739
DdeI	CTNAG	3 cut(s)	321, 355, 735
DpnI	GATC	2 cut(s)	255, 699
DpnII	GATC	2 cut(s)	253, 697
Ecl136II	GAGCTC	1 cut(s)	529
Eco130I	CCWWGG	1 cut(s)	238
Eco24I	GRGCYC	1 cut(s)	531
Eco32I	GATATC	1 cut(s)	680
Eco53kI	GAGCTC	1 cut(s)	529
Eco88I	CYCGRG	1 cut(s)	610
EcoICRI	GAGCTC	1 cut(s)	529
EcoNI	CCTNNNNNAGG	1 cut(s)	52
EcoRII	CCWGG	2 cut(s)	47, 544
EcoRV	GATATC	1 cut(s)	680
EcoT14I	CCWWGG	1 cut(s)	238
EcoT38I	GRGCYC	1 cut(s)	531
ErhI	CCWWGG	1 cut(s)	238
FaeI	CATG	3 cut(s)	230, 353, 637
FaqI	GGGAC	1 cut(s)	40
FatI	CATG	3 cut(s)	226, 349, 633
FbaI	TGATCA	1 cut(s)	253
Fnu4HI	GCNGC	1 cut(s)	210
FokI	GGATG	3 cut(s)	29, 221, 602
FriOI	GRGCYC	1 cut(s)	531
Fsp4HI	GCNGC	1 cut(s)	210
FspBI	CTAG	3 cut(s)	54, 426, 506
GluI	GCNGC	1 cut(s)	210
GsuI	CTGGAG	2 cut(s)	316, 528
HaeIII	GGCC	1 cut(s)	609
HapII	CCGG	2 cut(s)	367, 611
HgaI	GACGC	1 cut(s)	215
Hin1II	CATG	3 cut(s)	230, 353, 637
HinfI	GANTC	5 cut(s)	5, 28, 184, 434, 660
HpaII	CCGG	2 cut(s)	367, 611
HphI	GGTGA	4 cut(s)	248, 280, 323, 536
Hpy166II	GTNNAC	1 cut(s)	314
Hpy188III	TCNNGA	5 cut(s)	251, 295, 367, 619, 683
Hpy8I	GTNNAC	1 cut(s)	314
Hpy99I	CGWCG	1 cut(s)	209
HpyAV	CCTTC	4 cut(s)	201, 301, 555, 576
HpyCH4III	ACNGT	1 cut(s)	20
HpyCH4IV	ACGT	1 cut(s)	14
HpyCH4V	TGCA	4 cut(s)	212, 230, 647, 690
HpyF3I	CTNAG	3 cut(s)	321, 355, 735
HpySE526I	ACGT	1 cut(s)	14
Hsp92II	CATG	3 cut(s)	230, 353, 637
Kpn2I	TCCGGA	1 cut(s)	366
Ksp22I	TGATCA	1 cut(s)	253
Kzo9I	GATC	2 cut(s)	253, 697
LmnI	GCTCC	2 cut(s)	369, 451
Lsp1109I	GCAGC	1 cut(s)	196
LweI	GCATC	1 cut(s)	624
MaeI	CTAG	3 cut(s)	54, 426, 506
MaeII	ACGT	1 cut(s)	14
MaeIII	GTNAC	1 cut(s)	602
MalI	GATC	2 cut(s)	255, 699
MbiI	CCGCTC	1 cut(s)	446
MboI	GATC	2 cut(s)	253, 697
MboII	GAAGA	5 cut(s)	60, 193, 390, 692, 743
MflI	RGATCY	1 cut(s)	697
MhlI	GDGCHC	1 cut(s)	531
MluCI	AATT	1 cut(s)	140
MlyI	GAGTC	3 cut(s)	14, 22, 193
MmeI	TCCRAC	4 cut(s)	244, 305, 306, 552
MnlI	CCTC	6 cut(s)	174, 398, 502, 552, 582, 650
MroI	TCCGGA	1 cut(s)	366
MslI	CAYNNNNRTG	2 cut(s)	597, 632
MspI	CCGG	2 cut(s)	367, 611
MspR9I	CCNGG	4 cut(s)	49, 546, 611, 612
Mva1269I	GAATGC	1 cut(s)	692
MvaI	CCWGG	2 cut(s)	49, 546
NciI	CCSGG	2 cut(s)	611, 612
NdeII	GATC	2 cut(s)	253, 697
NlaIII	CATG	3 cut(s)	230, 353, 637
NmuCI	GTSAC	1 cut(s)	602
PctI	GAATGC	1 cut(s)	692
PfeI	GAWTC	2 cut(s)	434, 660
PflMI	CCANNNNNTGG	1 cut(s)	48
PkrI	GCNGC	1 cut(s)	211
PleI	GAGTC	3 cut(s)	13, 22, 192
PpsI	GAGTC	3 cut(s)	13, 22, 192
Ppu21I	YACGTR	1 cut(s)	15
Psp124BI	GAGCTC	1 cut(s)	531
Psp6I	CCWGG	2 cut(s)	47, 544
PspGI	CCWGG	2 cut(s)	47, 544
PspPI	GGNCC	1 cut(s)	608
PsuI	RGATCY	1 cut(s)	697
RsaI	GTAC	2 cut(s)	17, 740
RsaNI	GTAC	2 cut(s)	16, 739
RseI	CAYNNNNRTG	2 cut(s)	597, 632
SacI	GAGCTC	1 cut(s)	531
SatI	GCNGC	1 cut(s)	210
Sau3AI	GATC	2 cut(s)	253, 697
Sau96I	GGNCC	1 cut(s)	608
ScaI	AGTACT	1 cut(s)	740
SchI	GAGTC	3 cut(s)	14, 22, 193
ScrFI	CCNGG	4 cut(s)	49, 546, 611, 612
SduI	GDGCHC	1 cut(s)	531
SfaNI	GCATC	1 cut(s)	624
SmaI	CCCGGG	1 cut(s)	612
SmiMI	CAYNNNNRTG	2 cut(s)	597, 632
SrfI	GCCCGGGC	1 cut(s)	612
Sse9I	AATT	1 cut(s)	140
SsiI	CCGC	3 cut(s)	178, 444, 522
SspMI	CTAG	3 cut(s)	54, 426, 506
SstI	GAGCTC	1 cut(s)	531
StyD4I	CCNGG	4 cut(s)	47, 544, 609, 610
StyI	CCWWGG	1 cut(s)	238
TaaI	ACNGT	1 cut(s)	20
TaiI	ACGT	1 cut(s)	17
TaqI	TCGA	4 cut(s)	194, 204, 488, 703
TasI	AATT	1 cut(s)	140
TatI	WGTACW	1 cut(s)	738
TfiI	GAWTC	2 cut(s)	434, 660
TseFI	GTSAC	1 cut(s)	602
TseI	GCWGC	1 cut(s)	209
Tsp45I	GTSAC	1 cut(s)	602
TspDTI	ATGAA	4 cut(s)	60, 153, 338, 616
TspMI	CCCGGG	1 cut(s)	610
Van91I	CCANNNNNTGG	1 cut(s)	48
XagI	CCTNNNNNAGG	1 cut(s)	52
XapI	RAATTY	1 cut(s)	140
XmaI	CCCGGG	1 cut(s)	610
XspI	CTAG	3 cut(s)	54, 426, 506
ZrmI	AGTACT	1 cut(s)	740

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.