Rmu_sc0036647.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0036647.1
OG0018923
Physical Location & Seq
Reverse (-)
489 .. 2219
1731 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0036647.1_g000001.1.cds

Sequence Viewer

Length: 1005 bp
ctgaaaaaacgacacacaaaacaatggcgtcctccctgtcttcactgtaccgcaccctccgcgctccttctccaccaccaccagaccctcccaccacaacagccaccaccacactcaccgctacaccgagccgagctccttcattggaagctgggacgcgccgagcaacagcaaggaggcgcaggccaagctcgcgcatctccggcgagactatgtgaagcagccaagcaggtaaaggagatccgcaaggagtacatcaaggaggtccagctgatgaggctcgagaagctccgaaaggacgaggcccgtaaagaagacctcaggcttcagaacgaggagctgaatgttaaatcaggccctcggttgcagatccgttgctcgcctcggttgctgttgccggttgcaggccttgattgctgttgtgaggagaccggcgagatggagatcaagacaaacgacgacgtgaacagcaccgttgcttttcgatggatcagcgccggaaaacgcagtgaatcctctacctccgcgtctagatcaaatcccggaaatgccaccgccgtggaaatccaccaaaacggaggccaaatgtcagcgcctgaatgtggttgcagcgtcgctgttcgcactttagcgacagagcagacatccgctctagatcgcctccgtatatatataaaaagtgcggacgtcgctcctccggcttcgatcaagcttcgacggcgcggcgcggcttgccggagggggcctaggggtctgagaagccggtctgcagtcaggtggagtcgccggcgacgaggttgcggcgttgcccagaagcttgcagttgcaggtccgtctgctgcccagaacgtgcaacctcgatctcctccgacctcaatcgttgcccagaacggtctgggatgcctctggcctccctcctgcaagccgggcgccgccgtcgccgcttggaaggtgctgctgcgtcgatgtccacactttatcgacagtgcgaacgtttgcttgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

334

Amino Acids

36.74

Weight (kDa)

10.16

Isoelectric Point (pI)

71.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 690
Acc36I ACCTGC 2 cut(s) 220, 818
AccB1I GGYRCC 1 cut(s) 929
AccBSI CCGCTC 1 cut(s) 650
AccII CGCG 6 cut(s) 62, 159, 195, 527, 723, 728
AclI AACGTT 1 cut(s) 993
AclWI GGATC 3 cut(s) 235, 364, 497
AcuI CTGAAG 1 cut(s) 311
AcyI GRCGYC 3 cut(s) 28, 687, 930
AfaI GTAC 2 cut(s) 49, 254
AfiI CCNNNNNNNGG 2 cut(s) 404, 602
AjiI CACGTC 1 cut(s) 463
AleI CACNNNNGTG 1 cut(s) 557
AluBI AGCT 8 cut(s) 136, 151, 191, 271, 289, 340, 712, 817
AluI AGCT 8 cut(s) 136, 151, 191, 271, 289, 340, 712, 817
Alw21I GWGCWC 1 cut(s) 138
Alw26I GTCTC 2 cut(s) 202, 422
AlwI GGATC 3 cut(s) 235, 364, 497
AlwNI CAGNNNCTG 1 cut(s) 596
Ama87I CYCGRG 1 cut(s) 281
AoxI GGCC 7 cut(s) 184, 303, 355, 406, 580, 743, 908
ApeKI GCWGC 5 cut(s) 221, 609, 839, 955, 958
AspA2I CCTAGG 1 cut(s) 746
AspLEI GCGC 9 cut(s) 64, 161, 182, 197, 497, 595, 723, 728, 932
AspS9I GGNCC 5 cut(s) 265, 304, 356, 743, 830
AsuC2I CCSGG 2 cut(s) 543, 927
AsuHPI GGTGA 1 cut(s) 108
AvaI CYCGRG 1 cut(s) 281
AvaII GGWCC 2 cut(s) 265, 830
AvrII CCTAGG 1 cut(s) 746
AxyI CCTNAGG 1 cut(s) 320
BanI GGYRCC 1 cut(s) 929
BanII GRGCYC 1 cut(s) 138
BbsI GAAGAC 2 cut(s) 32, 321
Bbv12I GWGCWC 1 cut(s) 138
BbvI GCAGC 5 cut(s) 233, 621, 826, 942, 945
BccI CCATC 2 cut(s) 433, 480
BceAI ACGGC 3 cut(s) 542, 734, 920
BcgI CGANNNNNNTGC 2 cut(s) 780, 814
BcnI CCSGG 2 cut(s) 543, 927
BcoDI GTCTC 2 cut(s) 202, 422
BfaI CTAG 3 cut(s) 531, 653, 747
BfmI CTRYAG 1 cut(s) 768
BfoI RGCGCY 3 cut(s) 498, 596, 933
BfuAI ACCTGC 2 cut(s) 220, 818
BlnI CCTAGG 1 cut(s) 746
Bme1390I CCNGG 2 cut(s) 543, 927
Bme18I GGWCC 2 cut(s) 265, 830
BmeT110I CYCGRG 1 cut(s) 281
BmgBI CACGTC 1 cut(s) 463
BmgT120I GGNCC 5 cut(s) 265, 304, 356, 743, 830
BmiI GGNNCC 2 cut(s) 744, 931
BmrFI CCNGG 2 cut(s) 543, 927
BmsI GCATC 2 cut(s) 206, 890
BpiI GAAGAC 2 cut(s) 32, 321
BplI GAGNNNNNCTC 2 cut(s) 120, 152
BpuMI CCSGG 2 cut(s) 543, 927
BsaBI GATNNNNATC 1 cut(s) 443
BsaHI GRCGYC 3 cut(s) 28, 687, 930
BsaI GGTCTC 1 cut(s) 422
BsaJI CCNNGG 4 cut(s) 359, 383, 558, 746
Bsc4I CCNNNNNNNGG 2 cut(s) 404, 602
Bse118I RCCGGY 4 cut(s) 397, 431, 762, 786
Bse21I CCTNAGG 1 cut(s) 320
Bse8I GATNNNNATC 1 cut(s) 443
BseDI CCNNGG 4 cut(s) 359, 383, 558, 746
BseGI GGATG 2 cut(s) 644, 905
BseJI GATNNNNATC 1 cut(s) 443
BseLI CCNNNNNNNGG 2 cut(s) 404, 602
BseMII CTCAG 2 cut(s) 334, 746
BseRI GAGGAG 4 cut(s) 350, 440, 684, 855
BseXI GCAGC 5 cut(s) 233, 621, 826, 942, 945
BseYI CCCAGC 1 cut(s) 151
Bsh1236I CGCG 6 cut(s) 62, 159, 195, 527, 723, 728
BshFI GGCC 7 cut(s) 186, 305, 357, 408, 582, 745, 910
BshNI GGYRCC 1 cut(s) 929
BsiHKAI GWGCWC 1 cut(s) 138
BsiHKCI CYCGRG 1 cut(s) 281
BslFI GGGAC 1 cut(s) 168
BslI CCNNNNNNNGG 2 cut(s) 404, 602
BsmAI GTCTC 2 cut(s) 202, 422
BsmFI GGGAC 1 cut(s) 168
BsnI GGCC 7 cut(s) 186, 305, 357, 408, 582, 745, 910
Bso31I GGTCTC 1 cut(s) 422
BsoBI CYCGRG 1 cut(s) 281
Bsp1286I GDGCHC 1 cut(s) 138
Bsp143I GATC 8 cut(s) 240, 369, 444, 489, 533, 655, 705, 860
BspANI GGCC 7 cut(s) 186, 305, 357, 408, 582, 745, 910
BspCNI CTCAG 2 cut(s) 333, 747
BspFNI CGCG 6 cut(s) 62, 159, 195, 527, 723, 728
BspLI GGNNCC 2 cut(s) 744, 931
BspMAI CTGCAG 1 cut(s) 772
BspMI ACCTGC 2 cut(s) 220, 818
BspPI GGATC 3 cut(s) 235, 364, 497
BspT107I GGYRCC 1 cut(s) 929
BspTNI GGTCTC 1 cut(s) 422
BsrBI CCGCTC 1 cut(s) 650
BsrFI RCCGGY 4 cut(s) 397, 431, 762, 786
BssAI RCCGGY 4 cut(s) 397, 431, 762, 786
BssECI CCNNGG 4 cut(s) 359, 383, 558, 746
BssMI GATC 8 cut(s) 240, 369, 444, 489, 533, 655, 705, 860
BssNI GRCGYC 3 cut(s) 28, 687, 930
BssT1I CCWWGG 1 cut(s) 746
Bst4CI ACNGT 4 cut(s) 47, 475, 893, 986
BstACI GRCGYC 3 cut(s) 28, 687, 930
BstC8I GCNNGC 8 cut(s) 184, 193, 380, 406, 733, 788, 819, 923
BstDEI CTNAG 2 cut(s) 320, 755
BstDSI CCRYGG 1 cut(s) 558
BstF5I GGATG 2 cut(s) 644, 905
BstFNI CGCG 6 cut(s) 62, 159, 195, 527, 723, 728
BstH2I RGCGCY 3 cut(s) 498, 596, 933
BstHHI GCGC 9 cut(s) 64, 161, 182, 197, 497, 595, 723, 728, 932
BstKTI GATC 8 cut(s) 243, 372, 447, 492, 536, 658, 708, 863
BstMAI GTCTC 2 cut(s) 202, 422
BstMBI GATC 8 cut(s) 240, 369, 444, 489, 533, 655, 705, 860
BstSCI CCNGG 2 cut(s) 541, 925
BstSFI CTRYAG 1 cut(s) 768
BstUI CGCG 6 cut(s) 62, 159, 195, 527, 723, 728
BstV1I GCAGC 5 cut(s) 233, 621, 826, 942, 945
BstV2I GAAGAC 2 cut(s) 32, 321
BstX2I RGATCY 2 cut(s) 240, 369
BstXI CCANNNNNNTGG 1 cut(s) 559
BstYI RGATCY 2 cut(s) 240, 369
Bsu36I CCTNAGG 1 cut(s) 320
BsuRI GGCC 7 cut(s) 186, 305, 357, 408, 582, 745, 910
BtgI CCRYGG 1 cut(s) 558
BtrI CACGTC 1 cut(s) 463
BtsCI GGATG 2 cut(s) 644, 905
BtsI GCAGTG 1 cut(s) 514
BtsIMutI CAGTG 3 cut(s) 43, 514, 991
BveI ACCTGC 2 cut(s) 220, 818
Cac8I GCNNGC 8 cut(s) 184, 193, 380, 406, 733, 788, 819, 923
CaiI CAGNNNCTG 1 cut(s) 596
CfoI GCGC 9 cut(s) 64, 161, 182, 197, 497, 595, 723, 728, 932
Cfr10I RCCGGY 4 cut(s) 397, 431, 762, 786
Cfr13I GGNCC 5 cut(s) 265, 304, 356, 743, 830
CseI GACGC 5 cut(s) 17, 165, 516, 601, 950
Csp6I GTAC 2 cut(s) 48, 253
CviQI GTAC 2 cut(s) 48, 253
DdeI CTNAG 2 cut(s) 320, 755
DinI GGCGCC 1 cut(s) 931
DpnI GATC 8 cut(s) 242, 371, 446, 491, 535, 657, 707, 862
DpnII GATC 8 cut(s) 240, 369, 444, 489, 533, 655, 705, 860
Ecl136II GAGCTC 1 cut(s) 136
Eco130I CCWWGG 1 cut(s) 746
Eco147I AGGCCT 1 cut(s) 408
Eco24I GRGCYC 1 cut(s) 138
Eco31I GGTCTC 1 cut(s) 422
Eco47I GGWCC 2 cut(s) 265, 830
Eco53kI GAGCTC 1 cut(s) 136
Eco57I CTGAAG 1 cut(s) 311
Eco81I CCTNAGG 1 cut(s) 320
Eco88I CYCGRG 1 cut(s) 281
EcoICRI GAGCTC 1 cut(s) 136
EcoO109I RGGNCCY 2 cut(s) 356, 743
EcoT14I CCWWGG 1 cut(s) 746
EcoT38I GRGCYC 1 cut(s) 138
EgeI GGCGCC 1 cut(s) 931
EheI GGCGCC 1 cut(s) 931
ErhI CCWWGG 1 cut(s) 746
FaiI YATR 5 cut(s) 214, 668, 670, 672, 674
FaqI GGGAC 1 cut(s) 168
FokI GGATG 2 cut(s) 631, 912
FriOI GRGCYC 1 cut(s) 138
FspBI CTAG 3 cut(s) 531, 653, 747
GlaI GCGC 9 cut(s) 63, 160, 181, 196, 496, 594, 722, 727, 931
GsaI CCCAGC 1 cut(s) 155
HaeII RGCGCY 3 cut(s) 498, 596, 933
HaeIII GGCC 7 cut(s) 186, 305, 357, 408, 582, 745, 910
HgaI GACGC 5 cut(s) 17, 165, 516, 601, 950
HhaI GCGC 9 cut(s) 64, 161, 182, 197, 497, 595, 723, 728, 932
Hin1I GRCGYC 3 cut(s) 28, 687, 930
Hin6I GCGC 9 cut(s) 62, 159, 180, 195, 495, 593, 721, 726, 930
HinP1I GCGC 9 cut(s) 62, 159, 180, 195, 495, 593, 721, 726, 930
HindIII AAGCTT 2 cut(s) 710, 815
HinfI GANTC 2 cut(s) 512, 781
HphI GGTGA 1 cut(s) 108
Hpy166II GTNNAC 2 cut(s) 466, 971
Hpy188I TCNGA 4 cut(s) 293, 330, 756, 870
Hpy188III TCNNGA 4 cut(s) 283, 448, 531, 653
Hpy8I GTNNAC 2 cut(s) 466, 971
Hpy99I CGWCG 8 cut(s) 461, 464, 617, 692, 720, 795, 941, 966
HpyAV CCTTC 3 cut(s) 77, 149, 943
HpyCH4III ACNGT 4 cut(s) 47, 475, 893, 986
HpyCH4IV ACGT 4 cut(s) 462, 687, 849, 993
HpyCH4V TGCA 8 cut(s) 367, 404, 609, 770, 821, 827, 853, 921
HpyF3I CTNAG 2 cut(s) 320, 755
HpySE526I ACGT 4 cut(s) 462, 687, 849, 993
Hsp92I GRCGYC 3 cut(s) 28, 687, 930
HspAI GCGC 9 cut(s) 62, 159, 180, 195, 495, 593, 721, 726, 930
KasI GGCGCC 1 cut(s) 929
KroI GCCGGC 1 cut(s) 786
KroNI GCCGGC 1 cut(s) 788
Kzo9I GATC 8 cut(s) 240, 369, 444, 489, 533, 655, 705, 860
LmnI GCTCC 5 cut(s) 69, 141, 294, 337, 697
Lsp1109I GCAGC 5 cut(s) 233, 621, 826, 942, 945
LweI GCATC 2 cut(s) 206, 890
MaeI CTAG 3 cut(s) 531, 653, 747
MaeII ACGT 4 cut(s) 462, 687, 849, 993
MalI GATC 8 cut(s) 242, 371, 446, 491, 535, 657, 707, 862
MbiI CCGCTC 1 cut(s) 650
MboI GATC 8 cut(s) 240, 369, 444, 489, 533, 655, 705, 860
MboII GAAGA 2 cut(s) 32, 326
MflI RGATCY 2 cut(s) 240, 369
MhlI GDGCHC 1 cut(s) 138
Mly113I GGCGCC 1 cut(s) 930
MlyI GAGTC 1 cut(s) 790
MmeI TCCRAC 1 cut(s) 893
MreI CGCCGGCG 1 cut(s) 786
MroNI GCCGGC 1 cut(s) 786
MseI TTAA 1 cut(s) 348
MslI CAYNNNNRTG 1 cut(s) 557
MspA1I CMGCKG 1 cut(s) 271
MspR9I CCNGG 2 cut(s) 543, 927
MteI GCGCNGCGC 1 cut(s) 724
MvnI CGCG 6 cut(s) 62, 159, 195, 527, 723, 728
NaeI GCCGGC 1 cut(s) 788
NarI GGCGCC 1 cut(s) 930
NciI CCSGG 2 cut(s) 543, 927
NdeII GATC 8 cut(s) 240, 369, 444, 489, 533, 655, 705, 860
NgoMIV GCCGGC 1 cut(s) 786
NlaIV GGNNCC 2 cut(s) 744, 931
NmeAIII GCCGAG 2 cut(s) 157, 187
OliI CACNNNNGTG 1 cut(s) 557
PaeR7I CTCGAG 1 cut(s) 281
PceI AGGCCT 1 cut(s) 408
PcsI WCGNNNNNNNCGW 1 cut(s) 790
PdiI GCCGGC 1 cut(s) 788
PfeI GAWTC 1 cut(s) 512
PfoI TCCNGGA 1 cut(s) 541
PleI GAGTC 1 cut(s) 789
PluTI GGCGCC 1 cut(s) 933
PpsI GAGTC 1 cut(s) 789
Psp124BI GAGCTC 1 cut(s) 138
Psp1406I AACGTT 1 cut(s) 993
PspFI CCCAGC 1 cut(s) 151
PspN4I GGNNCC 2 cut(s) 744, 931
PspPI GGNCC 5 cut(s) 265, 304, 356, 743, 830
PstI CTGCAG 1 cut(s) 772
PstNI CAGNNNCTG 1 cut(s) 596
PsuI RGATCY 2 cut(s) 240, 369
PvuII CAGCTG 1 cut(s) 271
RsaI GTAC 2 cut(s) 49, 254
RsaNI GTAC 2 cut(s) 48, 253
RseI CAYNNNNRTG 1 cut(s) 557
SacI GAGCTC 1 cut(s) 138
SaqAI TTAA 1 cut(s) 348
Sau3AI GATC 8 cut(s) 240, 369, 444, 489, 533, 655, 705, 860
Sau96I GGNCC 5 cut(s) 265, 304, 356, 743, 830
SchI GAGTC 1 cut(s) 790
ScrFI CCNGG 2 cut(s) 543, 927
SduI GDGCHC 1 cut(s) 138
SfaNI GCATC 2 cut(s) 206, 890
SfcI CTRYAG 1 cut(s) 768
SfoI GGCGCC 1 cut(s) 931
Sfr274I CTCGAG 1 cut(s) 281
SgrAI CRCCGGYG 1 cut(s) 786
SinI GGWCC 2 cut(s) 265, 830
SlaI CTCGAG 1 cut(s) 281
SmiMI CAYNNNNRTG 1 cut(s) 557
SmlI CTYRAG 1 cut(s) 281
SmoI CTYRAG 1 cut(s) 281
SseBI AGGCCT 1 cut(s) 408
SspDI GGCGCC 1 cut(s) 929
SspMI CTAG 3 cut(s) 531, 653, 747
SstI GAGCTC 1 cut(s) 138
StuI AGGCCT 1 cut(s) 408
StyD4I CCNGG 2 cut(s) 541, 925
StyI CCWWGG 1 cut(s) 746
TaaI ACNGT 4 cut(s) 47, 475, 893, 986
TaiI ACGT 4 cut(s) 465, 690, 852, 996
TaqI TCGA 7 cut(s) 282, 484, 704, 715, 859, 964, 981
TatI WGTACW 1 cut(s) 252
TauI GCSGC 5 cut(s) 726, 731, 804, 935, 944
TfiI GAWTC 1 cut(s) 512
Tru1I TTAA 1 cut(s) 348
Tru9I TTAA 1 cut(s) 348
TscAI CASTG 3 cut(s) 50, 514, 991
TseI GCWGC 5 cut(s) 221, 609, 839, 955, 958
TspDTI ATGAA 1 cut(s) 131
TspGWI ACGGA 4 cut(s) 362, 591, 653, 822
TspRI CASTG 3 cut(s) 50, 514, 991
VpaK11BI GGWCC 2 cut(s) 265, 830
XbaI TCTAGA 2 cut(s) 530, 652
XhoI CTCGAG 1 cut(s) 281
XmaJI CCTAGG 1 cut(s) 746
XspI CTAG 3 cut(s) 531, 653, 747
ZraI GACGTC 1 cut(s) 688
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.