Rmu_sc0006662.1_g000007

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006662.1
OG0018923
Physical Location & Seq
Forward (+)
27380 .. 27942
563 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006662.1_g000007.1.cds

Sequence Viewer

Length: 501 bp
atgatccgggcacccacgctgcacctttcttcgccggttttcgccggttgcagacctgttgccggttgcaggtcctcgattgttgttttgatcccaatccgttgctcgcctcagttgctgttgccggttgcaggcctcgattgctgttgtgaggagaccggcgagatggagatcaagaagtgtgttggatcgtcggaatctgcaagagagagagagaggcgtcgtgcaggagagagagcggagagagacgatgattcagatcggcttggctaccggagtcgaagaaacgacgacgtgaacagcaccgtcgctttccgatggatcagcgtcggaaaatgccgcgaatcctctacctccgcctctggatcaacgcgcggaaacgccgccgctgtggaaatccaccgaagtcgtgttaggggggagagagagagagagagagacaagctccggcgaagggatggaatagagagagaatggcagtggctgcaatttcttaattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

166

Amino Acids

18.81

Weight (kDa)

9.26

Isoelectric Point (pI)

64.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 60
AccB1I GGYRCC 1 cut(s) 10
AccBSI CCGCTC 1 cut(s) 239
AccII CGCG 3 cut(s) 342, 373, 375
AciI CCGC 6 cut(s) 239, 340, 357, 375, 384, 387
AclWI GGATC 4 cut(s) 85, 196, 329, 373
AcyI GRCGYC 1 cut(s) 220
AfiI CCNNNNNNNGG 4 cut(s) 62, 69, 131, 454
AjiI CACGTC 1 cut(s) 295
AluBI AGCT 1 cut(s) 445
AluI AGCT 1 cut(s) 445
Alw26I GTCTC 3 cut(s) 149, 240, 432
AlwI GGATC 4 cut(s) 85, 196, 329, 373
AlwNI CAGNNNCTG 2 cut(s) 118, 484
AoxI GGCC 1 cut(s) 133
ApeKI GCWGC 2 cut(s) 19, 484
AspLEI GCGC 1 cut(s) 375
AspS9I GGNCC 1 cut(s) 72
AsuC2I CCSGG 1 cut(s) 8
AvaII GGWCC 1 cut(s) 72
BaeGI GKGCMC 1 cut(s) 13
BanI GGYRCC 1 cut(s) 10
BbvI GCAGC 2 cut(s) 6, 471
BccI CCATC 3 cut(s) 160, 312, 452
BcnI CCSGG 1 cut(s) 8
BcoDI GTCTC 3 cut(s) 149, 240, 432
BfuAI ACCTGC 1 cut(s) 60
BisI GCNGC 5 cut(s) 20, 340, 384, 387, 485
BlsI GCNGC 5 cut(s) 21, 341, 385, 388, 486
Bme1390I CCNGG 1 cut(s) 8
Bme18I GGWCC 1 cut(s) 72
BmgBI CACGTC 1 cut(s) 295
BmgT120I GGNCC 1 cut(s) 72
BmiI GGNNCC 1 cut(s) 12
BmrFI CCNGG 1 cut(s) 8
BplI GAGNNNNNCTC 2 cut(s) 429, 461
BpuMI CCSGG 1 cut(s) 8
BsaBI GATNNNNATC 3 cut(s) 95, 170, 258
BsaHI GRCGYC 1 cut(s) 220
BsaI GGTCTC 1 cut(s) 149
BsaWI WCCGGW 1 cut(s) 273
Bsc4I CCNNNNNNNGG 4 cut(s) 62, 69, 131, 454
Bse118I RCCGGY 5 cut(s) 34, 44, 62, 124, 158
Bse8I GATNNNNATC 3 cut(s) 95, 170, 258
BseGI GGATG 1 cut(s) 463
BseJI GATNNNNATC 3 cut(s) 95, 170, 258
BseLI CCNNNNNNNGG 4 cut(s) 62, 69, 131, 454
BseMII CTCAG 1 cut(s) 125
BseRI GAGGAG 1 cut(s) 167
BseSI GKGCMC 1 cut(s) 13
BseXI GCAGC 2 cut(s) 6, 471
BsgI GTGCAG 2 cut(s) 5, 246
Bsh1236I CGCG 3 cut(s) 342, 373, 375
BshFI GGCC 1 cut(s) 135
BshNI GGYRCC 1 cut(s) 10
BsiSI CCGG 8 cut(s) 7, 35, 45, 63, 125, 159, 274, 448
BslI CCNNNNNNNGG 4 cut(s) 62, 69, 131, 454
BsmAI GTCTC 3 cut(s) 149, 240, 432
BsmBI CGTCTC 1 cut(s) 240
BsnI GGCC 1 cut(s) 135
Bso31I GGTCTC 1 cut(s) 149
Bsp1286I GDGCHC 1 cut(s) 13
Bsp143I GATC 7 cut(s) 3, 90, 171, 188, 259, 321, 365
BspACI CCGC 6 cut(s) 239, 340, 357, 375, 384, 387
BspANI GGCC 1 cut(s) 135
BspCNI CTCAG 1 cut(s) 124
BspFNI CGCG 3 cut(s) 342, 373, 375
BspLI GGNNCC 1 cut(s) 12
BspMI ACCTGC 1 cut(s) 60
BspPI GGATC 4 cut(s) 85, 196, 329, 373
BspT107I GGYRCC 1 cut(s) 10
BspTNI GGTCTC 1 cut(s) 149
BsrBI CCGCTC 1 cut(s) 239
BsrFI RCCGGY 5 cut(s) 34, 44, 62, 124, 158
BssAI RCCGGY 5 cut(s) 34, 44, 62, 124, 158
BssMI GATC 7 cut(s) 3, 90, 171, 188, 259, 321, 365
BssNI GRCGYC 1 cut(s) 220
Bst4CI ACNGT 1 cut(s) 307
BstACI GRCGYC 1 cut(s) 220
BstAPI GCANNNNNTGC 1 cut(s) 484
BstC8I GCNNGC 2 cut(s) 107, 133
BstDEI CTNAG 1 cut(s) 111
BstF5I GGATG 1 cut(s) 463
BstFNI CGCG 3 cut(s) 342, 373, 375
BstHHI GCGC 1 cut(s) 375
BstKTI GATC 7 cut(s) 6, 93, 174, 191, 262, 324, 368
BstMAI GTCTC 3 cut(s) 149, 240, 432
BstMBI GATC 7 cut(s) 3, 90, 171, 188, 259, 321, 365
BstMWI GCNNNNNNNGC 3 cut(s) 115, 141, 484
BstSCI CCNGG 1 cut(s) 6
BstSLI GKGCMC 1 cut(s) 13
BstUI CGCG 3 cut(s) 342, 373, 375
BstV1I GCAGC 2 cut(s) 6, 471
BsuRI GGCC 1 cut(s) 135
BtrI CACGTC 1 cut(s) 295
BtsCI GGATG 1 cut(s) 463
BtsI GCAGTG 1 cut(s) 485
BtsIMutI CAGTG 1 cut(s) 485
BveI ACCTGC 1 cut(s) 60
Cac8I GCNNGC 2 cut(s) 107, 133
CaiI CAGNNNCTG 2 cut(s) 118, 484
CfoI GCGC 1 cut(s) 375
Cfr10I RCCGGY 5 cut(s) 34, 44, 62, 124, 158
Cfr13I GGNCC 1 cut(s) 72
CseI GACGC 2 cut(s) 209, 316
CviJI RGCY 5 cut(s) 135, 265, 270, 445, 484
CviKI_1 RGCY 5 cut(s) 135, 265, 270, 445, 484
DdeI CTNAG 1 cut(s) 111
DpnI GATC 7 cut(s) 5, 92, 173, 190, 261, 323, 367
DpnII GATC 7 cut(s) 3, 90, 171, 188, 259, 321, 365
EciI GGCGGA 1 cut(s) 346
Eco147I AGGCCT 1 cut(s) 135
Eco31I GGTCTC 1 cut(s) 149
Eco47I GGWCC 1 cut(s) 72
EcoO109I RGGNCCY 1 cut(s) 72
Esp3I CGTCTC 1 cut(s) 240
Fnu4HI GCNGC 5 cut(s) 20, 340, 384, 387, 485
FokI GGATG 1 cut(s) 470
Fsp4HI GCNGC 5 cut(s) 20, 340, 384, 387, 485
GlaI GCGC 1 cut(s) 374
GluI GCNGC 5 cut(s) 20, 340, 384, 387, 485
HaeIII GGCC 1 cut(s) 135
HapII CCGG 8 cut(s) 7, 35, 45, 63, 125, 159, 274, 448
HgaI GACGC 2 cut(s) 209, 316
HhaI GCGC 1 cut(s) 375
Hin1I GRCGYC 1 cut(s) 220
Hin6I GCGC 1 cut(s) 373
HinP1I GCGC 1 cut(s) 373
HinfI GANTC 4 cut(s) 197, 254, 277, 344
HpaII CCGG 8 cut(s) 7, 35, 45, 63, 125, 159, 274, 448
Hpy166II GTNNAC 1 cut(s) 298
Hpy188I TCNGA 4 cut(s) 196, 259, 317, 332
Hpy188III TCNNGA 2 cut(s) 175, 363
Hpy8I GTNNAC 1 cut(s) 298
Hpy99I CGWCG 6 cut(s) 196, 225, 293, 296, 311, 332
HpyAV CCTTC 1 cut(s) 447
HpyCH4III ACNGT 1 cut(s) 307
HpyCH4IV ACGT 1 cut(s) 294
HpyCH4V TGCA 7 cut(s) 22, 51, 69, 131, 203, 227, 487
HpyF10VI GCNNNNNNNGC 3 cut(s) 115, 141, 484
HpyF3I CTNAG 1 cut(s) 111
HpySE526I ACGT 1 cut(s) 294
Hsp92I GRCGYC 1 cut(s) 220
HspAI GCGC 1 cut(s) 373
Kzo9I GATC 7 cut(s) 3, 90, 171, 188, 259, 321, 365
LmnI GCTCC 1 cut(s) 450
Lsp1109I GCAGC 2 cut(s) 6, 471
MaeII ACGT 1 cut(s) 294
MalI GATC 7 cut(s) 5, 92, 173, 190, 261, 323, 367
MbiI CCGCTC 1 cut(s) 239
MboI GATC 7 cut(s) 3, 90, 171, 188, 259, 321, 365
MboII GAAGA 2 cut(s) 21, 294
MhlI GDGCHC 1 cut(s) 13
MluCI AATT 2 cut(s) 488, 496
MlyI GAGTC 1 cut(s) 286
MmeI TCCRAC 3 cut(s) 166, 174, 310
MnlI CCTC 8 cut(s) 85, 120, 145, 146, 210, 358, 364, 370
MseI TTAA 1 cut(s) 495
MspA1I CMGCKG 1 cut(s) 389
MspI CCGG 8 cut(s) 7, 35, 45, 63, 125, 159, 274, 448
MspR9I CCNGG 1 cut(s) 8
MvnI CGCG 3 cut(s) 342, 373, 375
MwoI GCNNNNNNNGC 3 cut(s) 115, 141, 484
NciI CCSGG 1 cut(s) 8
NdeII GATC 7 cut(s) 3, 90, 171, 188, 259, 321, 365
NlaIV GGNNCC 1 cut(s) 12
PceI AGGCCT 1 cut(s) 135
PfeI GAWTC 3 cut(s) 197, 254, 344
PkrI GCNGC 5 cut(s) 21, 341, 385, 388, 486
PleI GAGTC 1 cut(s) 285
PpsI GAGTC 1 cut(s) 285
PpuMI RGGWCCY 1 cut(s) 72
Psp5II RGGWCCY 1 cut(s) 72
PspN4I GGNNCC 1 cut(s) 12
PspPI GGNCC 1 cut(s) 72
PspPPI RGGWCCY 1 cut(s) 72
PstNI CAGNNNCTG 2 cut(s) 118, 484
SaqAI TTAA 1 cut(s) 495
SatI GCNGC 5 cut(s) 20, 340, 384, 387, 485
Sau3AI GATC 7 cut(s) 3, 90, 171, 188, 259, 321, 365
Sau96I GGNCC 1 cut(s) 72
SchI GAGTC 1 cut(s) 286
ScrFI CCNGG 1 cut(s) 8
SduI GDGCHC 1 cut(s) 13
SetI ASST 6 cut(s) 27, 58, 74, 297, 356, 447
SinI GGWCC 1 cut(s) 72
Sse9I AATT 2 cut(s) 488, 496
SseBI AGGCCT 1 cut(s) 135
SsiI CCGC 6 cut(s) 239, 340, 357, 375, 384, 387
StuI AGGCCT 1 cut(s) 135
StyD4I CCNGG 1 cut(s) 6
TaaI ACNGT 1 cut(s) 307
TaiI ACGT 1 cut(s) 297
TaqI TCGA 3 cut(s) 77, 138, 280
TasI AATT 2 cut(s) 488, 496
TauI GCSGC 3 cut(s) 342, 386, 389
TfiI GAWTC 3 cut(s) 197, 254, 344
Tru1I TTAA 1 cut(s) 495
Tru9I TTAA 1 cut(s) 495
TscAI CASTG 1 cut(s) 485
TseI GCWGC 2 cut(s) 19, 484
TspGWI ACGGA 1 cut(s) 89
TspRI CASTG 1 cut(s) 485
VpaK11BI GGWCC 1 cut(s) 72
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.