Rmu_sc0005621.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005621.1
OG0018923
Physical Location & Seq
Forward (+)
606 .. 848
243 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005621.1_g000001.1.cds

Sequence Viewer

Length: 243 bp
atgtccgcactttcgctaaagtgcggacatcgacgctacagccccactcaagctgcgacgagcggcgccgcttgctggacggactggtttgcagtcgggtggagttgtcggcgacgaggttgcagtgctgcccagaacattgcagttgcaggtgaggtcgctgcccagaatcagcaacctcaatcagtgcccacaagcggtctgggatgcctccggcctccatcgaggcctgagaggggctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

80

Amino Acids

8.46

Weight (kDa)

9.75

Isoelectric Point (pI)

85.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 140
Acc36I ACCTGC 1 cut(s) 140
AccB1I GGYRCC 1 cut(s) 65
AccBSI CCGCTC 1 cut(s) 63
AciI CCGC 5 cut(s) 6, 24, 63, 69, 198
AcyI GRCGYC 1 cut(s) 66
AfiI CCNNNNNNNGG 3 cut(s) 75, 197, 236
AluBI AGCT 1 cut(s) 53
AluI AGCT 1 cut(s) 53
AoxI GGCC 2 cut(s) 215, 227
ApeKI GCWGC 3 cut(s) 53, 128, 161
AspLEI GCGC 1 cut(s) 68
AsuHPI GGTGA 1 cut(s) 164
BaeGI GKGCMC 1 cut(s) 192
BanI GGYRCC 1 cut(s) 65
BbvI GCAGC 3 cut(s) 40, 115, 148
BccI CCATC 1 cut(s) 229
BcgI CGANNNNNNTGC 2 cut(s) 102, 136
BfmI CTRYAG 1 cut(s) 37
BfoI RGCGCY 1 cut(s) 69
BfuAI ACCTGC 1 cut(s) 140
BisI GCNGC 5 cut(s) 54, 64, 69, 129, 162
BlsI GCNGC 5 cut(s) 55, 65, 70, 130, 163
BmiI GGNNCC 1 cut(s) 67
BmsI GCATC 1 cut(s) 197
BpuEI CTTGAG 1 cut(s) 33
BsaHI GRCGYC 1 cut(s) 66
Bsc4I CCNNNNNNNGG 3 cut(s) 75, 197, 236
Bse1I ACTGG 1 cut(s) 89
Bse3DI GCAATG 1 cut(s) 138
BseGI GGATG 1 cut(s) 212
BseLI CCNNNNNNNGG 3 cut(s) 75, 197, 236
BseMI GCAATG 1 cut(s) 138
BseMII CTCAG 1 cut(s) 222
BseNI ACTGG 1 cut(s) 89
BseSI GKGCMC 1 cut(s) 192
BseXI GCAGC 3 cut(s) 40, 115, 148
BshFI GGCC 2 cut(s) 217, 229
BshNI GGYRCC 1 cut(s) 65
BsiSI CCGG 1 cut(s) 214
BslI CCNNNNNNNGG 3 cut(s) 75, 197, 236
BsnI GGCC 2 cut(s) 217, 229
Bsp1286I GDGCHC 1 cut(s) 192
BspACI CCGC 5 cut(s) 6, 24, 63, 69, 198
BspANI GGCC 2 cut(s) 217, 229
BspCNI CTCAG 1 cut(s) 223
BspLI GGNNCC 1 cut(s) 67
BspMI ACCTGC 1 cut(s) 140
BspT107I GGYRCC 1 cut(s) 65
BsrBI CCGCTC 1 cut(s) 63
BsrDI GCAATG 1 cut(s) 138
BsrI ACTGG 1 cut(s) 89
BssNI GRCGYC 1 cut(s) 66
BstACI GRCGYC 1 cut(s) 66
BstC8I GCNNGC 1 cut(s) 73
BstDEI CTNAG 1 cut(s) 231
BstF5I GGATG 1 cut(s) 212
BstH2I RGCGCY 1 cut(s) 69
BstHHI GCGC 1 cut(s) 68
BstMWI GCNNNNNNNGC 1 cut(s) 72
BstSFI CTRYAG 1 cut(s) 37
BstSLI GKGCMC 1 cut(s) 192
BstV1I GCAGC 3 cut(s) 40, 115, 148
BsuRI GGCC 2 cut(s) 217, 229
BtsCI GGATG 1 cut(s) 212
BtsI GCAGTG 1 cut(s) 130
BtsIMutI CAGTG 2 cut(s) 130, 192
BveI ACCTGC 1 cut(s) 140
Cac8I GCNNGC 1 cut(s) 73
CfoI GCGC 1 cut(s) 68
CseI GACGC 1 cut(s) 42
CviJI RGCY 5 cut(s) 42, 53, 217, 229, 240
CviKI_1 RGCY 5 cut(s) 42, 53, 217, 229, 240
DdeI CTNAG 1 cut(s) 231
DinI GGCGCC 1 cut(s) 67
Eco147I AGGCCT 1 cut(s) 229
EgeI GGCGCC 1 cut(s) 67
EheI GGCGCC 1 cut(s) 67
Fnu4HI GCNGC 5 cut(s) 54, 64, 69, 129, 162
FokI GGATG 1 cut(s) 219
Fsp4HI GCNGC 5 cut(s) 54, 64, 69, 129, 162
GlaI GCGC 1 cut(s) 67
GluI GCNGC 5 cut(s) 54, 64, 69, 129, 162
HaeII RGCGCY 1 cut(s) 69
HaeIII GGCC 2 cut(s) 217, 229
HapII CCGG 1 cut(s) 214
HgaI GACGC 1 cut(s) 42
HhaI GCGC 1 cut(s) 68
Hin1I GRCGYC 1 cut(s) 66
Hin6I GCGC 1 cut(s) 66
HinP1I GCGC 1 cut(s) 66
HinfI GANTC 1 cut(s) 169
HpaII CCGG 1 cut(s) 214
HphI GGTGA 1 cut(s) 164
Hpy99I CGWCG 3 cut(s) 36, 61, 117
HpyCH4V TGCA 4 cut(s) 92, 123, 143, 149
HpyF10VI GCNNNNNNNGC 1 cut(s) 72
HpyF3I CTNAG 1 cut(s) 231
Hsp92I GRCGYC 1 cut(s) 66
HspAI GCGC 1 cut(s) 66
KasI GGCGCC 1 cut(s) 65
LpnPI CCDG 7 cut(s) 61, 70, 135, 146, 179, 188, 227
Lsp1109I GCAGC 3 cut(s) 40, 115, 148
LweI GCATC 1 cut(s) 197
MbiI CCGCTC 1 cut(s) 63
MhlI GDGCHC 1 cut(s) 192
Mly113I GGCGCC 1 cut(s) 66
MnlI CCTC 7 cut(s) 110, 148, 189, 219, 221, 228, 228
MspI CCGG 1 cut(s) 214
MwoI GCNNNNNNNGC 1 cut(s) 72
NarI GGCGCC 1 cut(s) 66
NlaIV GGNNCC 1 cut(s) 67
PaqCI CACCTGC 1 cut(s) 140
PceI AGGCCT 1 cut(s) 229
PfeI GAWTC 1 cut(s) 169
PkrI GCNGC 5 cut(s) 55, 65, 70, 130, 163
PluTI GGCGCC 1 cut(s) 69
PspN4I GGNNCC 1 cut(s) 67
SatI GCNGC 5 cut(s) 54, 64, 69, 129, 162
SduI GDGCHC 1 cut(s) 192
SetI ASST 5 cut(s) 55, 121, 154, 159, 181
SfaNI GCATC 1 cut(s) 197
SfcI CTRYAG 1 cut(s) 37
SfoI GGCGCC 1 cut(s) 67
SmlI CTYRAG 1 cut(s) 48
SmoI CTYRAG 1 cut(s) 48
SseBI AGGCCT 1 cut(s) 229
SsiI CCGC 5 cut(s) 6, 24, 63, 69, 198
SspDI GGCGCC 1 cut(s) 65
StuI AGGCCT 1 cut(s) 229
TaqI TCGA 2 cut(s) 31, 224
TauI GCSGC 2 cut(s) 66, 71
TfiI GAWTC 1 cut(s) 169
TscAI CASTG 2 cut(s) 130, 192
TseI GCWGC 3 cut(s) 53, 128, 161
TspGWI ACGGA 1 cut(s) 95
TspRI CASTG 2 cut(s) 130, 192
XcmI CCANNNNNNNNNTGG 1 cut(s) 199
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.